Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22660

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,899,002	+				+0.1
4,899,013	-				-1.4
4,899,082	-				+1.2
4,899,087	+				-0.4
4,899,088	-				+0.6
4,899,088	-				-0.5
4,899,088	-				-0.1
4,899,217	+				-1.2
4,899,218	-				-0.9
4,899,322	-		DZA65_RS22655	0.18	+2.7
4,899,442	-		DZA65_RS22655	0.34	-0.5
4,899,442	-		DZA65_RS22655	0.34	+0.1
4,899,442	-		DZA65_RS22655	0.34	-1.7
4,899,442	-		DZA65_RS22655	0.34	+0.1
4,899,442	-		DZA65_RS22655	0.34	-2.1
4,899,445	+		DZA65_RS22655	0.34	-2.4
4,899,445	+		DZA65_RS22655	0.34	-0.1
4,899,446	-		DZA65_RS22655	0.34	+2.6
4,899,532	+		DZA65_RS22655	0.46	-1.5
4,899,544	+		DZA65_RS22655	0.47	-1.8
4,899,544	+		DZA65_RS22655	0.47	+0.4
4,899,544	+		DZA65_RS22655	0.47	-0.7
4,899,545	-		DZA65_RS22655	0.47	-1.2
4,899,545	-		DZA65_RS22655	0.47	+0.6
4,899,545	-		DZA65_RS22655	0.47	+1.2
4,899,545	-		DZA65_RS22655	0.47	+1.6
4,899,566	-		DZA65_RS22655	0.50	+0.4
4,899,566	-		DZA65_RS22655	0.50	-2.6
4,899,585	+		DZA65_RS22655	0.52	+1.6
4,899,586	-		DZA65_RS22655	0.53	-0.5
4,899,586	-		DZA65_RS22655	0.53	+3.6
4,899,586	-				-1.2
4,899,586	-		DZA65_RS22655	0.53	-0.7
4,899,618	+		DZA65_RS22655	0.57	-2.1
4,899,619	-		DZA65_RS22655	0.57	-0.4
4,899,650	+		DZA65_RS22655	0.61	+3.6
4,899,650	+		DZA65_RS22655	0.61	-1.2
4,899,650	+		DZA65_RS22655	0.61	+1.6
4,899,650	+		DZA65_RS22655	0.61	+2.3
4,899,650	+		DZA65_RS22655	0.61	+0.9
4,899,650	+		DZA65_RS22655	0.61	+1.6
4,899,650	+		DZA65_RS22655	0.61	-0.4
4,899,650	+		DZA65_RS22655	0.61	-1.6
4,899,650	+		DZA65_RS22655	0.61	+2.5
4,899,651	-		DZA65_RS22655	0.61	-0.5
4,899,651	-		DZA65_RS22655	0.61	+0.1
4,899,651	-		DZA65_RS22655	0.61	-0.7
4,899,651	-		DZA65_RS22655	0.61	+3.3
4,899,704	+		DZA65_RS22655	0.68	-2.2
4,899,704	+		DZA65_RS22655	0.68	+4.6
4,899,705	-		DZA65_RS22655	0.68	-1.2
4,899,705	-		DZA65_RS22655	0.68	-1.8
4,899,705	-		DZA65_RS22655	0.68	-0.7
4,899,705	-		DZA65_RS22655	0.68	+0.6
4,899,786	+		DZA65_RS22655	0.78	+1.5
4,899,786	+		DZA65_RS22655	0.78	+0.8
4,899,786	+		DZA65_RS22655	0.78	+2.0
4,899,786	+		DZA65_RS22655	0.78	+0.6
4,899,786	+		DZA65_RS22655	0.78	-1.2
4,899,786	+		DZA65_RS22655	0.78	+1.6
4,899,787	-		DZA65_RS22655	0.79	-0.9
4,899,787	-		DZA65_RS22655	0.79	-1.4
4,899,787	-		DZA65_RS22655	0.79	+2.5
4,899,787	-		DZA65_RS22655	0.79	+0.3
4,899,787	-		DZA65_RS22655	0.79	-2.7
4,899,787	-		DZA65_RS22655	0.79	+1.2
4,899,787	-		DZA65_RS22655	0.79	-1.8
4,899,943	+				-1.8
4,899,943	+				+2.2
4,899,943	+				-2.3
4,899,943	+				+0.1
4,899,943	+				-0.2
4,899,943	+				-1.5
4,899,944	-				+3.8
4,899,944	-				-1.2
4,899,944	-				+0.6
4,899,944	-				+3.2
4,899,944	-				-0.4
4,899,944	-				-1.4
4,899,944	-				-1.2
4,899,944	-				-0.0
4,899,951	-				+0.1
4,900,008	+				+2.3
4,900,008	+				-1.8
4,900,008	+				-2.7
4,900,008	+				-1.5
4,900,009	-				+0.5
4,900,009	-				+3.0
4,900,059	-				-1.7
4,900,286	-		DZA65_RS22660	0.30	-1.2
4,900,286	-		DZA65_RS22660	0.30	+1.6
4,900,286	-		DZA65_RS22660	0.30	-0.4
4,900,327	+		DZA65_RS22660	0.34	-0.7
4,900,327	+		DZA65_RS22660	0.34	-1.7
4,900,327	+		DZA65_RS22660	0.34	-2.4
4,900,327	+		DZA65_RS22660	0.34	+0.6
4,900,327	+		DZA65_RS22660	0.34	+7.2
4,900,327	+		DZA65_RS22660	0.34	-1.5
4,900,327	+		DZA65_RS22660	0.34	+0.8
4,900,327	+		DZA65_RS22660	0.34	-1.2
4,900,327	+		DZA65_RS22660	0.34	+3.0
4,900,327	+		DZA65_RS22660	0.34	-0.5
4,900,327	+		DZA65_RS22660	0.34	-2.3
4,900,327	+		DZA65_RS22660	0.34	+1.3
4,900,327	+		DZA65_RS22660	0.34	-1.8
4,900,327	+		DZA65_RS22660	0.34	-1.2
4,900,327	+		DZA65_RS22660	0.34	+0.9
4,900,327	+		DZA65_RS22660	0.34	+0.8
4,900,327	+		DZA65_RS22660	0.34	-0.4
4,900,327	+		DZA65_RS22660	0.34	-0.4
4,900,327	+		DZA65_RS22660	0.34	-1.5
4,900,327	+		DZA65_RS22660	0.34	+0.6
4,900,328	-		DZA65_RS22660	0.34	+2.6
4,900,328	-		DZA65_RS22660	0.34	-1.4
4,900,328	-		DZA65_RS22660	0.34	+0.6
4,900,328	-		DZA65_RS22660	0.34	+0.1
4,900,328	-		DZA65_RS22660	0.34	+4.3
4,900,328	-		DZA65_RS22660	0.34	+0.1
4,900,328	-		DZA65_RS22660	0.34	-2.4
4,900,328	-		DZA65_RS22660	0.34	-1.7
4,900,328	-		DZA65_RS22660	0.34	-0.5
4,900,328	-		DZA65_RS22660	0.34	+5.5
4,900,328	-		DZA65_RS22660	0.34	-0.4
4,900,328	-		DZA65_RS22660	0.34	-1.5
4,900,328	-		DZA65_RS22660	0.34	-0.1
4,900,328	-		DZA65_RS22660	0.34	-2.2
4,900,328	-		DZA65_RS22660	0.34	-0.4
4,900,328	-		DZA65_RS22660	0.34	-1.2
4,900,328	-		DZA65_RS22660	0.34	-1.2
4,900,353	+		DZA65_RS22660	0.36	-2.2
4,900,353	+		DZA65_RS22660	0.36	+0.6
4,900,354	-		DZA65_RS22660	0.37	-1.5
4,900,428	+		DZA65_RS22660	0.44	+1.2
4,900,428	+		DZA65_RS22660	0.44	+1.9
4,900,429	-		DZA65_RS22660	0.44	-0.9
4,900,429	-		DZA65_RS22660	0.44	-0.9
4,900,429	-		DZA65_RS22660	0.44	-0.9
4,900,440	-		DZA65_RS22660	0.45	+2.0
4,900,441	+		DZA65_RS22660	0.45	+3.6
4,900,441	+		DZA65_RS22660	0.45	-1.9
4,900,441	+		DZA65_RS22660	0.45	+1.6
4,900,441	+		DZA65_RS22660	0.45	-0.9
4,900,441	+		DZA65_RS22660	0.45	-0.7
4,900,441	+		DZA65_RS22660	0.45	-1.7
4,900,441	+		DZA65_RS22660	0.45	-0.7
4,900,441	+		DZA65_RS22660	0.45	-1.0
4,900,441	+		DZA65_RS22660	0.45	+0.2
4,900,442	-		DZA65_RS22660	0.46	-0.4
4,900,442	-		DZA65_RS22660	0.46	-3.1
4,900,442	-		DZA65_RS22660	0.46	-0.2
4,900,442	-		DZA65_RS22660	0.46	-0.5
4,900,442	-		DZA65_RS22660	0.46	-0.4
4,900,442	-		DZA65_RS22660	0.46	-1.2
4,900,442	-		DZA65_RS22660	0.46	+0.1
4,900,442	-		DZA65_RS22660	0.46	-1.4
4,900,442	-		DZA65_RS22660	0.46	+1.9
4,900,442	-		DZA65_RS22660	0.46	+2.6
4,900,442	-		DZA65_RS22660	0.46	+0.4
4,900,442	-		DZA65_RS22660	0.46	-0.7
4,900,442	-		DZA65_RS22660	0.46	-3.2
4,900,442	-		DZA65_RS22660	0.46	+2.2
4,900,442	-		DZA65_RS22660	0.46	+0.1
4,900,442	-		DZA65_RS22660	0.46	+0.3
4,900,442	-		DZA65_RS22660	0.46	+3.9
4,900,445	+		DZA65_RS22660	0.46	+2.0
4,900,445	+		DZA65_RS22660	0.46	-1.5
4,900,446	-		DZA65_RS22660	0.46	+2.6
4,900,446	-		DZA65_RS22660	0.46	+1.5
4,900,446	-		DZA65_RS22660	0.46	-0.7
4,900,446	-		DZA65_RS22660	0.46	+2.5
4,900,446	-		DZA65_RS22660	0.46	+0.3
4,900,446	-		DZA65_RS22660	0.46	-0.6
4,900,446	-		DZA65_RS22660	0.46	+0.6
4,900,446	-		DZA65_RS22660	0.46	+1.3
4,900,446	-		DZA65_RS22660	0.46	+1.8
4,900,519	+		DZA65_RS22660	0.53	-2.0
4,900,519	+		DZA65_RS22660	0.53	+1.0
4,900,520	-		DZA65_RS22660	0.53	+1.2
4,900,599	+		DZA65_RS22660	0.62	+1.0
4,900,599	+		DZA65_RS22660	0.62	+1.3
4,900,599	+		DZA65_RS22660	0.62	-1.4
4,900,599	+		DZA65_RS22660	0.62	+2.2
4,900,641	+		DZA65_RS22660	0.66	+1.6
4,900,641	+		DZA65_RS22660	0.66	+1.2
4,900,641	+		DZA65_RS22660	0.66	+0.1
4,900,641	+		DZA65_RS22660	0.66	-1.2
4,900,641	+		DZA65_RS22660	0.66	+1.6
4,900,641	+		DZA65_RS22660	0.66	-1.9
4,900,641	+		DZA65_RS22660	0.66	+0.5
4,900,642	-		DZA65_RS22660	0.66	+1.4
4,900,642	-		DZA65_RS22660	0.66	-0.4
4,900,642	-		DZA65_RS22660	0.66	-0.2
4,900,642	-		DZA65_RS22660	0.66	+2.2
4,900,642	-		DZA65_RS22660	0.66	-0.7
4,900,657	+		DZA65_RS22660	0.67	+2.0
4,900,657	+		DZA65_RS22660	0.67	-0.5
4,900,658	-		DZA65_RS22660	0.68	+1.6
4,900,762	-		DZA65_RS22660	0.78	-2.4
4,900,762	-		DZA65_RS22660	0.78	+0.3
4,901,027	-				-2.7
4,901,028	+				+1.6
4,901,072	+				-0.7
4,901,072	+				-1.8
4,901,079	+				-0.4
4,901,079	+				-1.2
4,901,080	-				+1.6
4,901,080	-				-0.9
4,901,080	-				-0.2
4,901,080	-				-1.5
4,901,094	+				+0.8
4,901,094	+				-0.4
4,901,094	+				-1.4
4,901,094	+				-1.2
4,901,094	+				+1.9
4,901,095	-				+3.2
4,901,095	-				-0.5
4,901,095	-				-0.9
4,901,095	-				-0.9
4,901,095	-				+1.8
4,901,095	-				-0.8
4,901,095	-				-0.4
4,901,095	-				+0.1
4,901,103	+				+0.1
4,901,104	-				+0.8
4,901,104	-				-0.1
4,901,104	-				-1.2
4,901,106	+				-1.4
4,901,106	+				-0.4
4,901,106	+				+0.6
4,901,107	-				+0.6
4,901,107	-				-1.1
4,901,109	+				-1.2
4,901,128	+				+1.1
4,901,129	-				-0.2
4,901,132	+				-2.1
4,901,133	-				+0.1
4,901,140	+				-0.9
4,901,184	+				-0.9
4,901,188	-				+0.8
4,901,217	+				+1.2
4,901,251	-		DZA65_RS22665	0.10	-1.2
4,901,258	-		DZA65_RS22665	0.13	-2.7
4,901,268	+		DZA65_RS22665	0.16	-3.0
4,901,268	+		DZA65_RS22665	0.16	-0.6
4,901,311	-		DZA65_RS22665	0.33	+1.5
4,901,311	-		DZA65_RS22665	0.33	-0.4
4,901,311	-		DZA65_RS22665	0.33	+2.4
4,901,385	+		DZA65_RS22665	0.60	-0.7
4,901,386	-		DZA65_RS22665	0.61	-0.5
4,901,386	-		DZA65_RS22665	0.61	-2.3
4,901,408	+		DZA65_RS22665	0.69	-1.8
4,901,408	+		DZA65_RS22665	0.69	-0.5
4,901,421	+		DZA65_RS22665	0.74	-2.4
4,901,422	-		DZA65_RS22665	0.74	-1.5
4,901,422	-		DZA65_RS22665	0.74	-0.4
4,901,508	+				-0.7
4,901,509	-				-1.2
4,901,547	+		DZA65_RS22670	0.13	-1.5
4,901,547	+		DZA65_RS22670	0.13	+0.3
4,901,547	+		DZA65_RS22670	0.13	+1.6
4,901,547	+		DZA65_RS22670	0.13	+1.6
4,901,547	+		DZA65_RS22670	0.13	-0.9
4,901,547	+		DZA65_RS22670	0.13	+0.4
4,901,547	+		DZA65_RS22670	0.13	-1.2
4,901,547	+		DZA65_RS22670	0.13	+0.2
4,901,548	-		DZA65_RS22670	0.13	-0.7
4,901,548	-		DZA65_RS22670	0.13	-2.3
4,901,548	-		DZA65_RS22670	0.13	-0.9
4,901,548	-		DZA65_RS22670	0.13	-0.4
4,901,548	-		DZA65_RS22670	0.13	-0.9
4,901,552	+		DZA65_RS22670	0.15	+0.3
4,901,553	-		DZA65_RS22670	0.15	+0.5
4,901,663	+		DZA65_RS22670	0.57	-1.5
4,901,663	+		DZA65_RS22670	0.57	-2.2
4,901,664	-		DZA65_RS22670	0.57	+3.3
4,901,664	-		DZA65_RS22670	0.57	+1.3
4,901,664	-		DZA65_RS22670	0.57	-1.7
4,901,691	-		DZA65_RS22670	0.68	-1.4
4,901,708	+		DZA65_RS22670	0.74	+1.3
4,901,708	+		DZA65_RS22670	0.74	+1.2
4,901,708	+		DZA65_RS22670	0.74	+0.9
4,901,708	+		DZA65_RS22670	0.74	-1.4
4,901,709	-		DZA65_RS22670	0.75	-1.2
4,901,709	-		DZA65_RS22670	0.75	+0.1
4,901,709	-				-0.7
4,901,755	+				+1.3
4,901,756	-				+0.1
4,901,772	+				-1.4
4,901,773	-				+5.0
4,901,773	-				-1.2
4,901,783	+				+0.9
4,901,809	+				-0.9
4,901,809	+				-1.7
4,901,891	+				-1.2
4,901,892	-				-0.0
4,901,895	+				+2.4
4,901,895	+				+0.1
4,901,895	+				+0.7
4,901,895	+				-0.4
4,901,895	+				-0.9
4,901,895	+				+1.6
4,901,895	+				-0.7
4,901,895	+				-1.6
4,901,895	+				-0.2
4,901,896	-				-0.0
4,901,896	-				-0.7
4,901,896	-				+0.1
4,901,896	-				-1.4
4,901,896	-				+0.2
4,901,896	-				+0.1
4,901,896	-				-2.1
4,901,896	-				+2.3
4,901,896	-				+2.3
4,901,905	+				+0.6
4,901,905	+				+2.6
4,901,905	+				-1.6
4,901,906	-				+0.6
4,901,906	-				-0.8
4,901,906	-				-0.4
4,901,906	-				+0.1
4,901,906	-				-0.9
4,901,906	-				-1.8
4,901,906	-				-1.9
4,901,910	+				-2.3
4,901,917	+				-1.4
4,901,918	-				+2.5
4,901,921	-				-0.4
4,901,928	-				-2.6
4,901,930	+				-1.4
4,901,930	+				-0.0
4,901,930	+				-0.4
4,901,930	+				+1.2
4,901,930	+				+0.1
4,901,930	+				-0.9
4,901,930	+				+2.6
4,901,931	-				+2.5
4,901,931	-				-1.5
4,901,931	-				-2.7
4,901,971	-				-1.4