Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21130

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,567,708	+				+0.6
4,567,709	-				-1.9
4,567,728	+				-2.6
4,567,728	+				+0.9
4,567,728	+				-2.2
4,567,729	-				-0.5
4,567,729	-				-1.2
4,567,729	-				-1.2
4,567,729	-				-1.0
4,567,745	+				-1.6
4,567,745	+				+0.3
4,567,745	+				+1.2
4,567,745	+				+2.1
4,567,745	+				+0.6
4,567,745	+				+0.6
4,567,745	+				-1.2
4,567,745	+				+0.0
4,567,746	-				-3.8
4,567,746	-				-1.2
4,567,746	-				+0.1
4,567,746	-				-1.9
4,567,746	-				+1.4
4,567,746	-				+0.0
4,567,746	-				+4.3
4,567,746	-				+0.0
4,567,746	-				+2.5
4,567,746	-				-0.4
4,567,746	-				-0.4
4,567,746	-				-0.4
4,567,752	+				+0.6
4,567,752	+				+1.1
4,567,752	+				-2.0
4,567,752	+				+3.3
4,567,752	+				-0.7
4,567,752	+				-0.5
4,567,752	+				+2.2
4,567,752	+				-0.4
4,567,752	+				-1.0
4,567,752	+				+1.5
4,567,752	+				+0.3
4,567,752	+				+0.2
4,567,752	+				-1.7
4,567,752	+				+1.0
4,567,752	+				-1.2
4,567,752	+				+1.6
4,567,752	+				-0.4
4,567,752	+				+0.6
4,567,752	+				-0.7
4,567,752	+				-2.1
4,567,752	+				+1.6
4,567,752	+				+0.8
4,567,752	+				-1.7
4,567,752	+				+1.0
4,567,752	+				+1.0
4,567,752	+				+1.0
4,567,752	+				-1.4
4,567,752	+				-1.0
4,567,753	-				+0.6
4,567,753	-				-1.9
4,567,753	-				-0.7
4,567,753	-				-0.4
4,567,753	-				-2.7
4,567,753	-				+0.6
4,567,753	-				+1.6
4,567,753	-				-0.4
4,567,753	-				+0.6
4,567,753	-				+0.0
4,567,753	-				-2.0
4,567,753	-				+3.1
4,567,758	+				+5.2
4,567,758	+				+0.6
4,567,759	-				-1.7
4,567,759	-				-2.8
4,567,773	+				-1.7
4,567,773	+				+0.6
4,567,773	+				+5.4
4,567,773	+				+0.6
4,567,773	+				-1.4
4,567,773	+				+0.6
4,567,773	+				-1.4
4,567,773	+				+2.0
4,567,773	+				+0.0
4,567,774	-				+0.0
4,567,774	-				-1.9
4,567,774	-				+1.0
4,567,774	-				-2.1
4,567,774	-				-1.1
4,567,921	+		DZA65_RS21130	0.14	+0.3
4,567,921	+		DZA65_RS21130	0.14	-0.4
4,567,921	+		DZA65_RS21130	0.14	-1.4
4,567,922	-		DZA65_RS21130	0.14	+1.2
4,567,922	-		DZA65_RS21130	0.14	-0.1
4,567,924	+		DZA65_RS21130	0.15	-1.2
4,567,924	+		DZA65_RS21130	0.15	-0.9
4,567,924	+		DZA65_RS21130	0.15	-2.4
4,567,924	+		DZA65_RS21130	0.15	+0.0
4,567,925	-		DZA65_RS21130	0.15	-2.5
4,567,925	-		DZA65_RS21130	0.15	+0.2
4,567,925	-		DZA65_RS21130	0.15	-1.9
4,567,927	+		DZA65_RS21130	0.15	-3.4
4,567,927	+		DZA65_RS21130	0.15	+1.3
4,567,927	+		DZA65_RS21130	0.15	-0.2
4,567,928	-		DZA65_RS21130	0.15	+0.0
4,568,149	-		DZA65_RS21130	0.35	+0.0
4,568,149	-		DZA65_RS21130	0.35	-0.7
4,568,370	+		DZA65_RS21130	0.54	+0.0
4,568,370	+		DZA65_RS21130	0.54	+2.5
4,568,396	+		DZA65_RS21130	0.56	+0.4
4,568,590	+		DZA65_RS21130	0.74	-1.2
4,568,590	+		DZA65_RS21130	0.74	-1.7
4,568,590	+		DZA65_RS21130	0.74	-0.4
4,568,590	+		DZA65_RS21130	0.74	+0.0
4,568,590	+		DZA65_RS21130	0.74	+0.0
4,568,590	+		DZA65_RS21130	0.74	+1.7
4,568,590	+		DZA65_RS21130	0.74	+0.4
4,568,590	+		DZA65_RS21130	0.74	-0.4
4,568,590	+		DZA65_RS21130	0.74	-1.9
4,568,591	-		DZA65_RS21130	0.74	-1.0
4,568,591	-		DZA65_RS21130	0.74	+0.8
4,568,591	-		DZA65_RS21130	0.74	-1.0
4,568,591	-		DZA65_RS21130	0.74	-1.9
4,568,591	-		DZA65_RS21130	0.74	-1.2
4,568,591	-		DZA65_RS21130	0.74	+0.0
4,568,591	-		DZA65_RS21130	0.74	-0.2
4,568,591	-		DZA65_RS21130	0.74	-1.0
4,568,697	-		DZA65_RS21130	0.83	-0.7
4,568,786	+				-1.5
4,568,786	+				-1.6
4,568,787	-				+0.6
4,568,787	-				+1.0
4,568,899	+				-1.2
4,568,899	+				+0.7
4,568,899	+				-1.6
4,568,899	+				+0.6
4,568,899	+				+0.0
4,568,900	-				-0.7
4,568,900	-				-0.3
4,568,900	-				-1.0
4,568,967	+				-0.7
4,568,967	+				+0.5
4,568,967	+				+0.0
4,568,968	-				-1.9
4,568,968	-				+0.3
4,568,991	+				+0.0
4,568,991	+				-0.8
4,568,991	+				-0.7
4,568,991	+				+0.6
4,568,991	+				+0.0
4,568,992	-				+1.0
4,569,126	-		DZA65_RS21135	0.20	+0.0
4,569,186	+		DZA65_RS21135	0.25	-0.9
4,569,187	-		DZA65_RS21135	0.25	+1.3
4,569,187	-		DZA65_RS21135	0.25	-1.8
4,569,187	-		DZA65_RS21135	0.25	-1.4
4,569,249	+		DZA65_RS21135	0.30	+1.6
4,569,249	+		DZA65_RS21135	0.30	-2.1
4,569,249	+		DZA65_RS21135	0.30	-1.6
4,569,249	+		DZA65_RS21135	0.30	+0.0
4,569,250	-		DZA65_RS21135	0.30	-1.5
4,569,250	-		DZA65_RS21135	0.30	-2.2
4,569,250	-		DZA65_RS21135	0.30	-0.4
4,569,250	-		DZA65_RS21135	0.30	-0.2
4,569,306	+		DZA65_RS21135	0.35	+0.6
4,569,306	+		DZA65_RS21135	0.35	-2.6
4,569,416	-				+0.3
4,569,495	+		DZA65_RS21135	0.51	-0.9
4,569,495	+		DZA65_RS21135	0.51	-1.4
4,569,496	-		DZA65_RS21135	0.51	-1.1
4,569,512	+		DZA65_RS21135	0.52	+0.2
4,569,530	+		DZA65_RS21135	0.54	+0.0
4,569,530	+		DZA65_RS21135	0.54	+1.3
4,569,530	+		DZA65_RS21135	0.54	-0.7
4,569,530	+		DZA65_RS21135	0.54	-1.9
4,569,530	+		DZA65_RS21135	0.54	+1.6
4,569,530	+		DZA65_RS21135	0.54	-1.1
4,569,531	-		DZA65_RS21135	0.54	-2.2
4,569,531	-		DZA65_RS21135	0.54	+0.6
4,569,555	+		DZA65_RS21135	0.56	-1.6
4,569,555	+		DZA65_RS21135	0.56	-0.6
4,569,555	+		DZA65_RS21135	0.56	+1.0
4,569,585	-		DZA65_RS21135	0.58	+0.7
4,569,659	+		DZA65_RS21135	0.64	+1.6
4,569,659	+		DZA65_RS21135	0.64	-1.2
4,569,660	-		DZA65_RS21135	0.64	+0.0
4,569,660	-		DZA65_RS21135	0.64	+1.1
4,569,660	-		DZA65_RS21135	0.64	-1.6
4,569,660	-		DZA65_RS21135	0.64	-0.2
4,569,748	+		DZA65_RS21135	0.72	-2.6
4,569,748	+		DZA65_RS21135	0.72	-1.0
4,569,748	+		DZA65_RS21135	0.72	-0.4
4,569,748	+		DZA65_RS21135	0.72	-1.9
4,569,749	-		DZA65_RS21135	0.72	-1.6
4,569,784	+				-0.4
4,569,785	-		DZA65_RS21135	0.75	+0.2
4,569,884	+		DZA65_RS21135	0.83	-1.4
4,569,885	-		DZA65_RS21135	0.83	+3.0
4,569,885	-		DZA65_RS21135	0.83	-1.6
4,569,885	-		DZA65_RS21135	0.83	-1.2
4,569,885	-		DZA65_RS21135	0.83	+4.4
4,569,885	-		DZA65_RS21135	0.83	-1.7