Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20880

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,506,361	-		DZA65_RS20870	0.69	-1.4
4,506,467	+		DZA65_RS20870	0.83	+2.4
4,506,467	+		DZA65_RS20870	0.83	-0.0
4,506,468	-		DZA65_RS20870	0.84	+3.7
4,506,468	-		DZA65_RS20870	0.84	+2.2
4,506,468	-		DZA65_RS20870	0.84	+1.0
4,506,527	+				+0.3
4,506,566	+				-0.0
4,506,567	-				-1.4
4,506,601	+				+2.0
4,506,602	-				+1.7
4,506,602	-				+1.1
4,506,627	+				+3.2
4,506,627	+				+1.3
4,506,628	-				-0.7
4,506,635	+				+1.3
4,506,635	+				+0.6
4,506,635	+				+1.8
4,506,769	-		DZA65_RS20875	0.22	-2.1
4,506,831	+		DZA65_RS20875	0.33	-1.4
4,506,832	-		DZA65_RS20875	0.33	-0.7
4,506,832	-		DZA65_RS20875	0.33	-1.2
4,506,913	+		DZA65_RS20875	0.47	-0.6
4,507,110	+		DZA65_RS20875	0.81	-0.4
4,507,209	+				-1.7
4,507,209	+				-2.3
4,507,209	+				+1.0
4,507,210	-				+4.6
4,507,210	-				+0.3
4,507,210	-				+2.2
4,507,210	-				+0.6
4,507,212	+				-0.2
4,507,212	+				-0.4
4,507,212	+				+3.2
4,507,213	-				+0.7
4,507,218	+				+1.6
4,507,218	+				-1.2
4,507,218	+				+0.8
4,507,218	+				-0.9
4,507,218	+				-0.0
4,507,218	+				+0.6
4,507,218	+				-0.4
4,507,219	-				-0.0
4,507,219	-				-0.0
4,507,292	-				-1.0
4,507,384	+				+0.1
4,507,384	+				-0.4
4,507,385	-				+5.1
4,507,385	-				-1.4
4,507,385	-				-1.2
4,507,385	-				+1.6
4,507,385	-				-1.7
4,507,408	+				-0.4
4,507,408	+				-0.2
4,507,529	+				-0.0
4,507,529	+				-1.2
4,507,529	+				+3.4
4,507,529	+				+2.0
4,507,619	+		DZA65_RS20880	0.12	-0.4
4,507,620	-		DZA65_RS20880	0.12	+0.6
4,507,647	+		DZA65_RS20880	0.14	-1.7
4,507,647	+		DZA65_RS20880	0.14	-1.0
4,507,648	-		DZA65_RS20880	0.14	+1.9
4,507,655	+		DZA65_RS20880	0.14	-1.6
4,507,656	-		DZA65_RS20880	0.14	-0.0
4,507,656	-		DZA65_RS20880	0.14	-2.5
4,507,656	-		DZA65_RS20880	0.14	-0.0
4,507,656	-		DZA65_RS20880	0.14	+1.2
4,507,700	-		DZA65_RS20880	0.16	-1.2
4,507,809	+		DZA65_RS20880	0.21	-0.5
4,507,809	+		DZA65_RS20880	0.21	+1.7
4,507,810	-		DZA65_RS20880	0.21	+1.4
4,507,810	-		DZA65_RS20880	0.21	-2.1
4,507,967	-		DZA65_RS20880	0.28	-2.4
4,507,967	-		DZA65_RS20880	0.28	-0.7
4,507,967	-		DZA65_RS20880	0.28	-0.0
4,507,968	+		DZA65_RS20880	0.28	-0.7
4,507,968	+		DZA65_RS20880	0.28	+1.8
4,507,974	+		DZA65_RS20880	0.29	-3.8
4,507,975	-		DZA65_RS20880	0.29	-0.0
4,508,109	+		DZA65_RS20880	0.35	-0.4
4,508,109	+		DZA65_RS20880	0.35	-1.0
4,508,109	+		DZA65_RS20880	0.35	-0.7
4,508,109	+		DZA65_RS20880	0.35	+1.3
4,508,109	+		DZA65_RS20880	0.35	+0.2
4,508,109	+		DZA65_RS20880	0.35	-2.7
4,508,109	+				-1.2
4,508,109	+		DZA65_RS20880	0.35	-1.6
4,508,110	-		DZA65_RS20880	0.35	+1.8
4,508,110	-		DZA65_RS20880	0.35	+1.9
4,508,110	-		DZA65_RS20880	0.35	-2.2
4,508,110	-		DZA65_RS20880	0.35	-1.0
4,508,110	-		DZA65_RS20880	0.35	-0.1
4,508,110	-		DZA65_RS20880	0.35	+0.6
4,508,110	-		DZA65_RS20880	0.35	-0.9
4,508,110	-		DZA65_RS20880	0.35	+1.9
4,508,110	-		DZA65_RS20880	0.35	+3.6
4,508,110	-		DZA65_RS20880	0.35	-3.1
4,508,180	-		DZA65_RS20880	0.38	-0.2
4,508,203	+		DZA65_RS20880	0.39	+1.6
4,508,204	-		DZA65_RS20880	0.39	-0.4
4,508,363	-		DZA65_RS20880	0.47	-1.2
4,508,487	+		DZA65_RS20880	0.52	-1.6
4,508,487	+		DZA65_RS20880	0.52	+0.6
4,508,487	+		DZA65_RS20880	0.52	+0.2
4,508,488	-		DZA65_RS20880	0.53	+0.9
4,508,488	-		DZA65_RS20880	0.53	+1.0
4,508,488	-		DZA65_RS20880	0.53	-1.2
4,508,488	-		DZA65_RS20880	0.53	+2.4
4,508,625	+		DZA65_RS20880	0.59	-0.4
4,508,625	+		DZA65_RS20880	0.59	-1.2
4,508,769	+		DZA65_RS20880	0.66	-1.1
4,508,886	+		DZA65_RS20880	0.71	-1.0
4,508,886	+		DZA65_RS20880	0.71	-2.3
4,508,923	-		DZA65_RS20880	0.73	-1.0
4,509,070	+		DZA65_RS20880	0.79	-2.0
4,509,071	-		DZA65_RS20880	0.79	-1.9
4,509,071	-		DZA65_RS20880	0.79	-0.7
4,509,072	+		DZA65_RS20880	0.80	+0.9
4,509,072	+		DZA65_RS20880	0.80	+6.1
4,509,072	+		DZA65_RS20880	0.80	+6.7
4,509,072	+		DZA65_RS20880	0.80	-0.5
4,509,072	+		DZA65_RS20880	0.80	-0.7
4,509,073	-		DZA65_RS20880	0.80	+1.4
4,509,073	-		DZA65_RS20880	0.80	-0.0
4,509,073	-		DZA65_RS20880	0.80	+1.2
4,509,073	-		DZA65_RS20880	0.80	+3.2
4,509,073	-		DZA65_RS20880	0.80	-0.4
4,509,073	-		DZA65_RS20880	0.80	-0.2
4,509,073	-		DZA65_RS20880	0.80	-1.9
4,509,073	-		DZA65_RS20880	0.80	-0.4
4,509,073	-		DZA65_RS20880	0.80	-0.0
4,509,073	-		DZA65_RS20880	0.80	+2.6
4,509,073	-		DZA65_RS20880	0.80	-0.2
4,509,161	+		DZA65_RS20880	0.84	-1.9
4,509,188	+		DZA65_RS20880	0.85	-0.0
4,509,189	-		DZA65_RS20880	0.85	-1.0
4,509,201	+		DZA65_RS20880	0.85	-2.7
4,509,279	+		DZA65_RS20880	0.89	-1.4
4,509,279	+		DZA65_RS20880	0.89	-1.0
4,509,279	+		DZA65_RS20880	0.89	-0.0
4,509,280	-		DZA65_RS20880	0.89	+0.8
4,509,297	+		DZA65_RS20880	0.90	-1.5
4,509,298	-				+1.4
4,509,298	-				-0.2
4,509,325	+				-1.0
4,509,326	-				-1.4
4,509,326	-				+1.0
4,509,326	-				-0.3
4,509,428	+				+3.8
4,509,428	+				-0.7
4,509,447	+				-1.4
4,509,448	-				-1.9
4,509,448	-				-1.6
4,509,448	-				+0.3
4,509,458	-				+1.0
4,509,458	-				-2.0
4,509,458	-				+1.0
4,509,459	+				-1.5
4,509,459	+				-0.4
4,509,459	+				-0.0
4,509,459	+				+5.5
4,509,459	+				-1.3
4,509,459	+				-0.4
4,509,459	+				-0.4
4,509,459	+				+0.9
4,509,459	+				-0.7
4,509,459	+				+3.9
4,509,459	+				-2.0
4,509,459	+				-0.7
4,509,459	+				+0.8
4,509,459	+				-2.3
4,509,459	+				-0.0
4,509,459	+				-2.4
4,509,460	-				+4.5
4,509,460	-				-1.2
4,509,460	-				-0.0
4,509,460	-				-1.0
4,509,463	+				-1.2
4,509,463	+				+0.4
4,509,463	+				-1.0
4,509,463	+				-2.2
4,509,463	+				+0.6
4,509,463	+				+1.4
4,509,463	+				-0.5
4,509,464	-				+3.4
4,509,464	-				-1.9
4,509,464	-				-0.4
4,509,464	-				-1.4
4,509,464	-				+6.8
4,509,464	-				-0.3
4,509,488	+				-0.2
4,509,518	-				-2.1
4,509,518	-				-2.1
4,509,528	+				-1.2
4,509,528	+				+3.0
4,509,559	-				-1.9
4,509,645	+				-0.7
4,509,645	+				-0.4
4,509,645	+				-0.2
4,509,645	+				-1.2
4,509,646	-				-1.2
4,509,646	-				-0.3
4,509,678	+				-0.7
4,509,678	+				+1.0
4,509,678	+				-1.4
4,509,678	+				+2.3
4,509,679	-				-0.4
4,509,679	-				+0.7
4,509,679	-				+0.9
4,509,705	+				-0.6
4,509,731	-				-1.1
4,509,757	+				-1.4
4,509,758	-				-1.4
4,509,806	+		DZA65_RS20885	0.12	+2.3
4,509,806	+		DZA65_RS20885	0.12	-1.2
4,509,807	-		DZA65_RS20885	0.12	+1.6
4,509,807	-		DZA65_RS20885	0.12	-1.7
4,509,828	+		DZA65_RS20885	0.12	+3.7
4,509,829	-		DZA65_RS20885	0.12	-0.2
4,509,829	-		DZA65_RS20885	0.12	-2.0
4,509,829	-		DZA65_RS20885	0.12	-1.2
4,509,841	+		DZA65_RS20885	0.13	+0.2
4,509,841	+		DZA65_RS20885	0.13	-1.6
4,509,841	+		DZA65_RS20885	0.13	-1.7
4,509,841	+		DZA65_RS20885	0.13	-1.4
4,509,841	+		DZA65_RS20885	0.13	+0.6
4,509,842	-		DZA65_RS20885	0.13	+0.6
4,509,844	-		DZA65_RS20885	0.13	-0.4
4,509,844	-		DZA65_RS20885	0.13	+1.6
4,509,880	+		DZA65_RS20885	0.15	-1.6
4,509,881	-		DZA65_RS20885	0.15	+0.6
4,510,052	-		DZA65_RS20885	0.22	-2.7
4,510,052	-		DZA65_RS20885	0.22	+0.6
4,510,052	-		DZA65_RS20885	0.22	-1.2
4,510,158	+		DZA65_RS20885	0.26	-1.6
4,510,158	+		DZA65_RS20885	0.26	-1.6
4,510,159	-		DZA65_RS20885	0.26	-1.5
4,510,162	+		DZA65_RS20885	0.26	-2.3
4,510,162	+		DZA65_RS20885	0.26	+1.6
4,510,178	+		DZA65_RS20885	0.27	-0.4
4,510,178	+		DZA65_RS20885	0.27	-2.9
4,510,178	+		DZA65_RS20885	0.27	-0.7
4,510,178	+		DZA65_RS20885	0.27	-1.7
4,510,178	+		DZA65_RS20885	0.27	-2.0
4,510,178	+		DZA65_RS20885	0.27	-0.0
4,510,178	+		DZA65_RS20885	0.27	-0.9
4,510,178	+		DZA65_RS20885	0.27	-1.2
4,510,178	+		DZA65_RS20885	0.27	-0.2
4,510,178	+		DZA65_RS20885	0.27	+2.1
4,510,178	+		DZA65_RS20885	0.27	-0.0
4,510,178	+		DZA65_RS20885	0.27	-1.9
4,510,178	+		DZA65_RS20885	0.27	+3.2
4,510,179	-		DZA65_RS20885	0.27	-2.0
4,510,179	-		DZA65_RS20885	0.27	+0.2
4,510,179	-		DZA65_RS20885	0.27	-2.3
4,510,182	+		DZA65_RS20885	0.27	-0.3
4,510,182	+		DZA65_RS20885	0.27	+1.0
4,510,182	+		DZA65_RS20885	0.27	+2.6
4,510,183	-		DZA65_RS20885	0.27	+1.6
4,510,258	+		DZA65_RS20885	0.30	+1.6
4,510,258	+		DZA65_RS20885	0.30	-1.6
4,510,259	-		DZA65_RS20885	0.30	-0.2
4,510,259	-		DZA65_RS20885	0.30	-1.6
4,510,259	-		DZA65_RS20885	0.30	-0.7
4,510,260	+		DZA65_RS20885	0.30	-0.7
4,510,260	+		DZA65_RS20885	0.30	-0.7
4,510,260	+		DZA65_RS20885	0.30	+1.5
4,510,260	+		DZA65_RS20885	0.30	-0.2
4,510,260	+		DZA65_RS20885	0.30	+3.4
4,510,261	-		DZA65_RS20885	0.30	-0.3
4,510,261	-		DZA65_RS20885	0.30	-1.0
4,510,261	-		DZA65_RS20885	0.30	+3.4
4,510,302	+		DZA65_RS20885	0.32	-0.1
4,510,303	-		DZA65_RS20885	0.32	+1.7
4,510,303	-		DZA65_RS20885	0.32	-0.4
4,510,303	-		DZA65_RS20885	0.32	-1.4
4,510,385	+		DZA65_RS20885	0.35	-2.4
4,510,385	+		DZA65_RS20885	0.35	-3.5
4,510,386	-		DZA65_RS20885	0.35	-1.0