Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18785

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,049,602	+		DZA65_RS18775	0.37	+2.1
4,049,688	+		DZA65_RS18775	0.55	+1.5
4,049,689	-		DZA65_RS18775	0.55	-2.1
4,049,689	-		DZA65_RS18775	0.55	+0.5
4,049,707	+		DZA65_RS18775	0.59	+2.0
4,049,899	-				+0.8
4,049,913	+				-1.1
4,049,913	+				-2.8
4,049,913	+				-0.5
4,049,913	+				-0.5
4,049,913	+				+0.5
4,049,913	+				+1.1
4,049,913	+				+2.7
4,049,914	-				-2.1
4,049,914	-				+0.5
4,049,914	-				-2.1
4,049,914	-				+1.5
4,049,914	-				-0.1
4,049,914	-				+1.4
4,049,914	-				+1.8
4,049,914	-				+4.8
4,049,914	-				-0.3
4,049,915	+				+2.0
4,049,915	+				+4.2
4,049,915	+				-2.6
4,049,915	+				+1.0
4,049,915	+				-1.5
4,049,915	+				+0.7
4,049,915	+				-0.5
4,049,915	+				-0.5
4,049,916	-				-0.8
4,049,916	-				-2.1
4,049,916	-				-0.6
4,049,916	-				-0.1
4,049,916	-				-0.4
4,049,916	-				-0.8
4,049,917	+				-0.1
4,049,918	-				+0.5
4,049,925	+				+4.0
4,050,024	+		DZA65_RS18780	0.11	+1.1
4,050,128	+		DZA65_RS18780	0.33	+0.5
4,050,138	+		DZA65_RS18780	0.35	-0.5
4,050,138	+		DZA65_RS18780	0.35	+4.7
4,050,138	+		DZA65_RS18780	0.35	-1.3
4,050,138	+		DZA65_RS18780	0.35	+0.8
4,050,138	+		DZA65_RS18780	0.35	-2.7
4,050,138	+		DZA65_RS18780	0.35	+1.2
4,050,139	-		DZA65_RS18780	0.36	-2.6
4,050,139	-		DZA65_RS18780	0.36	+0.3
4,050,139	-		DZA65_RS18780	0.36	-1.1
4,050,139	-		DZA65_RS18780	0.36	-1.3
4,050,139	-		DZA65_RS18780	0.36	+1.3
4,050,139	-		DZA65_RS18780	0.36	+1.1
4,050,141	+		DZA65_RS18780	0.36	+1.1
4,050,141	+		DZA65_RS18780	0.36	-1.1
4,050,141	+		DZA65_RS18780	0.36	-0.3
4,050,142	-		DZA65_RS18780	0.36	-0.8
4,050,142	-		DZA65_RS18780	0.36	+0.5
4,050,142	-		DZA65_RS18780	0.36	-2.3
4,050,274	+		DZA65_RS18780	0.65	-2.0
4,050,274	+		DZA65_RS18780	0.65	+1.0
4,050,274	+		DZA65_RS18780	0.65	+0.9
4,050,274	+		DZA65_RS18780	0.65	+4.5
4,050,275	-		DZA65_RS18780	0.65	-0.3
4,050,327	+		DZA65_RS18780	0.76	-1.3
4,050,327	+		DZA65_RS18780	0.76	+3.2
4,050,327	+		DZA65_RS18780	0.76	-0.1
4,050,327	+		DZA65_RS18780	0.76	-0.4
4,050,327	+		DZA65_RS18780	0.76	-1.5
4,050,328	-		DZA65_RS18780	0.76	-1.5
4,050,328	-		DZA65_RS18780	0.76	-1.0
4,050,328	-		DZA65_RS18780	0.76	-0.1
4,050,328	-		DZA65_RS18780	0.76	+4.7
4,050,328	-		DZA65_RS18780	0.76	+0.9
4,050,328	-		DZA65_RS18780	0.76	+0.7
4,050,336	+		DZA65_RS18780	0.78	-1.5
4,050,436	-				+1.3
4,050,465	+				-0.1
4,050,465	+				-1.3
4,050,465	+				+0.1
4,050,465	+				-0.5
4,050,465	+				+0.5
4,050,465	+				-0.7
4,050,465	+				+0.2
4,050,465	+				-2.0
4,050,465	+				-0.5
4,050,465	+				+1.5
4,050,465	+				+0.4
4,050,465	+				-0.3
4,050,465	+				-0.1
4,050,465	+				-0.3
4,050,465	+				-0.4
4,050,465	+				-1.3
4,050,465	+				+0.5
4,050,466	-				-1.3
4,050,466	-				-1.7
4,050,466	-				+1.2
4,050,466	-				-0.5
4,050,466	-				-0.1
4,050,466	-				-1.6
4,050,466	-				-0.1
4,050,466	-				-2.3
4,050,466	-				-3.2
4,050,471	+				-0.6
4,050,471	+				+0.5
4,050,472	-				-1.1
4,050,472	-				-0.1
4,050,472	-				-0.1
4,050,472	-				-0.9
4,050,472	-				-2.5
4,050,472	-				-0.5
4,050,488	+		DZA65_RS18785	0.16	+1.9
4,050,488	+		DZA65_RS18785	0.16	+0.2
4,050,489	-		DZA65_RS18785	0.17	-1.3
4,050,489	-				+0.8
4,050,749	+		DZA65_RS18790	0.14	-0.1
4,050,749	+		DZA65_RS18790	0.14	+1.0
4,050,750	-		DZA65_RS18790	0.15	+2.6
4,050,750	-		DZA65_RS18790	0.15	-0.8
4,050,818	+		DZA65_RS18790	0.25	+1.1
4,050,818	+		DZA65_RS18790	0.25	+1.5
4,050,819	-		DZA65_RS18790	0.25	+0.0
4,050,819	-		DZA65_RS18790	0.25	-1.2
4,050,819	-		DZA65_RS18790	0.25	+0.9
4,050,819	-		DZA65_RS18790	0.25	+0.2
4,050,819	-		DZA65_RS18790	0.25	-1.6
4,050,819	-		DZA65_RS18790	0.25	-0.5
4,050,930	-		DZA65_RS18790	0.42	+2.0
4,050,930	-		DZA65_RS18790	0.42	+0.1
4,050,930	-		DZA65_RS18790	0.42	-0.2
4,050,935	+		DZA65_RS18790	0.43	+0.7
4,050,936	-		DZA65_RS18790	0.43	+0.5
4,051,088	+		DZA65_RS18790	0.67	-0.5
4,051,088	+		DZA65_RS18790	0.67	-0.1
4,051,088	+		DZA65_RS18790	0.67	-0.1
4,051,088	+		DZA65_RS18790	0.67	-1.0
4,051,088	+		DZA65_RS18790	0.67	+1.5
4,051,088	+		DZA65_RS18790	0.67	-0.5
4,051,088	+		DZA65_RS18790	0.67	+1.8
4,051,089	-		DZA65_RS18790	0.67	-1.3
4,051,089	-				-0.8
4,051,089	-		DZA65_RS18790	0.67	-0.8
4,051,089	-		DZA65_RS18790	0.67	+2.3
4,051,089	-		DZA65_RS18790	0.67	-2.2
4,051,158	+		DZA65_RS18790	0.77	-0.7
4,051,159	-		DZA65_RS18790	0.78	-1.9
4,051,200	-		DZA65_RS18790	0.84	+3.2
4,051,215	-		DZA65_RS18790	0.86	-1.5
4,051,215	-		DZA65_RS18790	0.86	-0.8
4,051,215	-		DZA65_RS18790	0.86	-0.8
4,051,217	+		DZA65_RS18790	0.87	+1.5
4,051,217	+		DZA65_RS18790	0.87	+3.0
4,051,217	+		DZA65_RS18790	0.87	+1.0
4,051,217	+		DZA65_RS18790	0.87	+0.6
4,051,217	+		DZA65_RS18790	0.87	+0.3
4,051,217	+		DZA65_RS18790	0.87	-0.8
4,051,218	-		DZA65_RS18790	0.87	+0.9
4,051,218	-		DZA65_RS18790	0.87	-0.5
4,051,218	-		DZA65_RS18790	0.87	+0.8
4,051,218	-		DZA65_RS18790	0.87	-1.4
4,051,218	-		DZA65_RS18790	0.87	+4.9
4,051,261	+				-0.5
4,051,261	+				+0.7
4,051,261	+				-1.4
4,051,261	+				+0.7
4,051,262	-				-0.7
4,051,262	-				+0.9
4,051,262	-				-0.2
4,051,262	-				-0.5
4,051,262	-				+0.2
4,051,262	-				+0.5
4,051,262	-				-0.7
4,051,283	+				-0.1
4,051,283	+				+0.8
4,051,284	-				-0.8
4,051,284	-				-2.6
4,051,284	-				+4.7
4,051,284	-				-1.3
4,051,284	-				-2.0
4,051,284	-				+0.9
4,051,284	-				-0.8
4,051,284	-				-1.1
4,051,284	-				-0.1
4,051,407	+				-1.7
4,051,408	-				+1.5
4,051,408	-				+1.2
4,051,408	-				-1.3
4,051,423	+				-1.1
4,051,424	-				-2.1
4,051,474	+				-1.5
4,051,569	+		DZA65_RS18795	0.14	-1.5
4,051,569	+		DZA65_RS18795	0.14	-2.8
4,051,569	+		DZA65_RS18795	0.14	-0.8
4,051,569	+		DZA65_RS18795	0.14	-1.2
4,051,569	+		DZA65_RS18795	0.14	-0.1
4,051,569	+		DZA65_RS18795	0.14	-2.1
4,051,570	-		DZA65_RS18795	0.14	-0.2
4,051,570	-		DZA65_RS18795	0.14	+0.9
4,051,570	-		DZA65_RS18795	0.14	-2.1
4,051,570	-		DZA65_RS18795	0.14	-1.3