Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17300

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS17295 and DZA65_RS17300 are separated by 159 nucleotidesDZA65_RS17300 and DZA65_RS17305 are separated by 100 nucleotidesDZA65_RS17305 and DZA65_RS17310 are separated by 65 nucleotides DZA65_RS17295: DZA65_RS17295 - 23S ribosomal RNA, at 3,727,688 to 3,730,711 _RS17295 DZA65_RS17300: DZA65_RS17300 - tRNA-Ala, at 3,730,871 to 3,730,946 _RS17300 DZA65_RS17305: DZA65_RS17305 - tRNA-Ile, at 3,731,047 to 3,731,123 _RS17305 DZA65_RS17310: DZA65_RS17310 - 16S ribosomal RNA, at 3,731,189 to 3,732,736 _RS17310 Position (kb) 3730 3731Strain fitness (log2 ratio) -1 0 1at 3730.836 kb on + strandat 3731.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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3,730,836 + -1.4
3,731,126 - -0.6

Or see this region's nucleotide sequence