Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16750

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,612,035	+		DZA65_RS16745	0.11	-2.2
3,612,036	-		DZA65_RS16745	0.11	+0.4
3,612,098	+		DZA65_RS16745	0.16	-1.8
3,612,098	+		DZA65_RS16745	0.16	+1.4
3,612,098	+		DZA65_RS16745	0.16	+2.1
3,612,098	+		DZA65_RS16745	0.16	-1.9
3,612,098	+		DZA65_RS16745	0.16	-0.6
3,612,098	+		DZA65_RS16745	0.16	-2.7
3,612,098	+		DZA65_RS16745	0.16	-0.2
3,612,098	+		DZA65_RS16745	0.16	+0.5
3,612,098	+		DZA65_RS16745	0.16	-0.2
3,612,098	+		DZA65_RS16745	0.16	-0.2
3,612,098	+		DZA65_RS16745	0.16	+1.4
3,612,098	+		DZA65_RS16745	0.16	-2.3
3,612,098	+		DZA65_RS16745	0.16	-0.6
3,612,099	-		DZA65_RS16745	0.17	+1.9
3,612,099	-		DZA65_RS16745	0.17	+0.4
3,612,099	-		DZA65_RS16745	0.17	-0.6
3,612,099	-		DZA65_RS16745	0.17	-1.2
3,612,099	-		DZA65_RS16745	0.17	-0.9
3,612,099	-		DZA65_RS16745	0.17	-0.0
3,612,099	-		DZA65_RS16745	0.17	-0.9
3,612,099	-		DZA65_RS16745	0.17	+0.2
3,612,099	-		DZA65_RS16745	0.17	-1.2
3,612,099	-		DZA65_RS16745	0.17	-0.9
3,612,099	-		DZA65_RS16745	0.17	-1.4
3,612,099	-		DZA65_RS16745	0.17	+0.5
3,612,141	+		DZA65_RS16745	0.20	-1.2
3,612,197	+		DZA65_RS16745	0.26	-0.9
3,612,198	-		DZA65_RS16745	0.26	-1.0
3,612,198	-		DZA65_RS16745	0.26	+0.4
3,612,198	-		DZA65_RS16745	0.26	-0.0
3,612,198	-		DZA65_RS16745	0.26	-0.9
3,612,237	+		DZA65_RS16745	0.29	+1.4
3,612,237	+		DZA65_RS16745	0.29	-0.2
3,612,237	+		DZA65_RS16745	0.29	+0.9
3,612,238	-		DZA65_RS16745	0.29	-1.1
3,612,244	-		DZA65_RS16745	0.30	+0.4
3,612,449	+		DZA65_RS16745	0.49	-0.6
3,612,449	+		DZA65_RS16745	0.49	+0.4
3,612,449	+		DZA65_RS16745	0.49	+1.4
3,612,450	-		DZA65_RS16745	0.49	-0.7
3,612,450	-		DZA65_RS16745	0.49	+1.6
3,612,522	+		DZA65_RS16745	0.56	-0.8
3,612,522	+		DZA65_RS16745	0.56	-0.9
3,612,522	+		DZA65_RS16745	0.56	-3.7
3,612,522	+		DZA65_RS16745	0.56	-0.6
3,612,523	-		DZA65_RS16745	0.56	-1.1
3,612,698	+		DZA65_RS16745	0.72	-1.4
3,612,699	-		DZA65_RS16745	0.72	-0.2
3,612,717	+		DZA65_RS16745	0.74	+0.4
3,612,839	-		DZA65_RS16745	0.85	+0.4
3,612,975	+				-0.2
3,612,975	+				+1.4
3,612,975	+				+0.6
3,612,975	+				-1.6
3,612,975	+				-0.0
3,612,976	-				-1.2
3,612,976	-				-0.6
3,612,976	-				-1.4
3,612,976	-				-0.7
3,612,976	-				+0.1
3,612,976	-				-0.9
3,612,998	+				-0.9
3,612,998	+				-1.9
3,612,998	+				-2.2
3,612,998	+				+0.4
3,612,998	+				+0.7
3,612,998	+				-0.8
3,612,998	+				-1.6
3,612,998	+				-0.1
3,612,998	+				+0.7
3,612,998	+				-0.2
3,612,998	+				-1.6
3,612,998	+				+0.5
3,612,998	+				+4.0
3,612,998	+				-0.4
3,612,999	-				-0.2
3,612,999	-				-0.5
3,612,999	-				+1.1
3,612,999	-				-0.9
3,612,999	-				-1.4
3,612,999	-				+0.8
3,612,999	-				+2.9
3,612,999	-				+4.4
3,612,999	-				-2.1
3,612,999	-				-0.6
3,612,999	-				+1.0
3,612,999	-				-0.6
3,612,999	-				-0.9
3,612,999	-				-0.9
3,613,245	+		DZA65_RS16750	0.31	-0.2
3,613,245	+		DZA65_RS16750	0.31	-1.2
3,613,245	+		DZA65_RS16750	0.31	-1.8
3,613,245	+		DZA65_RS16750	0.31	+0.4
3,613,245	+		DZA65_RS16750	0.31	+1.9
3,613,246	-		DZA65_RS16750	0.31	+0.7
3,613,246	-		DZA65_RS16750	0.31	+0.9
3,613,246	-		DZA65_RS16750	0.31	+1.1
3,613,246	-		DZA65_RS16750	0.31	+3.8
3,613,246	-		DZA65_RS16750	0.31	+3.8
3,613,246	-		DZA65_RS16750	0.31	+1.4
3,613,246	-		DZA65_RS16750	0.31	+0.4
3,613,401	+		DZA65_RS16750	0.51	-2.6
3,613,402	-		DZA65_RS16750	0.51	+3.5
3,613,402	-		DZA65_RS16750	0.51	+1.8
3,613,402	-		DZA65_RS16750	0.51	-1.8
3,613,402	-		DZA65_RS16750	0.51	-2.1
3,613,402	-		DZA65_RS16750	0.51	+0.4
3,613,480	+		DZA65_RS16750	0.61	-2.2
3,613,481	-		DZA65_RS16750	0.61	+0.6
3,613,515	+		DZA65_RS16750	0.65	-2.3
3,613,515	+		DZA65_RS16750	0.65	+0.2
3,613,516	-		DZA65_RS16750	0.65	-1.8
3,613,537	+		DZA65_RS16750	0.68	-1.4
3,613,537	+		DZA65_RS16750	0.68	-1.6
3,613,537	+		DZA65_RS16750	0.68	-0.2
3,613,537	+		DZA65_RS16750	0.68	-1.4
3,613,537	+		DZA65_RS16750	0.68	-1.1
3,613,537	+		DZA65_RS16750	0.68	+0.1
3,613,537	+		DZA65_RS16750	0.68	-0.4
3,613,537	+		DZA65_RS16750	0.68	-2.1
3,613,537	+		DZA65_RS16750	0.68	+0.3
3,613,537	+		DZA65_RS16750	0.68	+0.2
3,613,537	+		DZA65_RS16750	0.68	-0.6
3,613,538	-		DZA65_RS16750	0.68	-0.9
3,613,538	-		DZA65_RS16750	0.68	+0.3
3,613,538	-		DZA65_RS16750	0.68	-0.8
3,613,538	-		DZA65_RS16750	0.68	-1.4
3,613,538	-		DZA65_RS16750	0.68	-1.2
3,613,538	-		DZA65_RS16750	0.68	+0.4
3,613,538	-		DZA65_RS16750	0.68	+2.9
3,613,538	-		DZA65_RS16750	0.68	-0.9
3,613,540	+		DZA65_RS16750	0.68	-0.5
3,613,540	+		DZA65_RS16750	0.68	-0.3
3,613,540	+		DZA65_RS16750	0.68	+1.4
3,613,540	+		DZA65_RS16750	0.68	-1.8
3,613,540	+		DZA65_RS16750	0.68	-0.9
3,613,541	-		DZA65_RS16750	0.68	-0.6
3,613,541	-		DZA65_RS16750	0.68	-2.9
3,613,541	-		DZA65_RS16750	0.68	-1.2
3,613,541	-		DZA65_RS16750	0.68	-0.3
3,613,541	-		DZA65_RS16750	0.68	-0.9
3,613,541	-		DZA65_RS16750	0.68	-1.8
3,613,541	-		DZA65_RS16750	0.68	-2.1
3,613,541	-		DZA65_RS16750	0.68	+0.2
3,613,566	-		DZA65_RS16750	0.72	+0.1
3,613,577	-		DZA65_RS16750	0.73	+1.4
3,613,577	-		DZA65_RS16750	0.73	-1.6
3,613,704	+		DZA65_RS16750	0.89	+0.1
3,613,704	+		DZA65_RS16750	0.89	-1.1
3,613,704	+		DZA65_RS16750	0.89	-0.9
3,613,704	+		DZA65_RS16750	0.89	+0.6
3,613,704	+		DZA65_RS16750	0.89	-2.8
3,613,704	+		DZA65_RS16750	0.89	-0.2
3,613,704	+				+1.2
3,613,705	-		DZA65_RS16750	0.89	+5.5
3,613,705	-		DZA65_RS16750	0.89	-0.1
3,613,788	+				+0.4
3,613,789	-				-2.1
3,613,813	+				+3.2
3,613,814	-				-1.1
3,613,814	-				+1.4
3,613,814	-				-1.6
3,613,885	-				+1.8
3,613,898	+				+0.6
3,614,068	+				-0.6
3,614,069	-				+0.1
3,614,069	-				-0.4
3,614,130	-		DZA65_RS16755	0.15	-2.3
3,614,130	-		DZA65_RS16755	0.15	-2.4
3,614,251	+		DZA65_RS16755	0.26	-2.4
3,614,279	+		DZA65_RS16755	0.28	-2.3
3,614,279	+		DZA65_RS16755	0.28	-0.7
3,614,279	+		DZA65_RS16755	0.28	-0.9
3,614,279	+		DZA65_RS16755	0.28	-0.5
3,614,279	+		DZA65_RS16755	0.28	-1.4
3,614,279	+		DZA65_RS16755	0.28	-1.4
3,614,280	-		DZA65_RS16755	0.28	+3.4
3,614,280	-		DZA65_RS16755	0.28	+1.5
3,614,280	-		DZA65_RS16755	0.28	+0.6
3,614,280	-		DZA65_RS16755	0.28	-0.2
3,614,280	-		DZA65_RS16755	0.28	-1.5
3,614,280	-		DZA65_RS16755	0.28	-0.4
3,614,280	-		DZA65_RS16755	0.28	-1.2
3,614,280	-		DZA65_RS16755	0.28	-2.1
3,614,331	+		DZA65_RS16755	0.33	+2.3
3,614,371	-		DZA65_RS16755	0.36	-0.2
3,614,371	-		DZA65_RS16755	0.36	-0.2
3,614,755	-		DZA65_RS16755	0.71	-0.0