Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15925

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,455,454	+				+3.1
3,455,454	+				-2.3
3,455,454	+				-1.3
3,455,454	+				-1.4
3,455,455	-				-0.3
3,455,455	-				-1.5
3,455,455	-				-1.7
3,455,503	+				+1.6
3,455,504	-				-3.2
3,455,504	-				-1.0
3,455,528	+				-1.0
3,455,553	+				+0.3
3,455,553	+				-1.0
3,455,553	+				+0.3
3,455,554	-				+1.3
3,455,554	-				-1.6
3,455,554	-				-1.3
3,455,554	-				-1.2
3,455,554	-				-0.3
3,455,620	-				-0.3
3,455,623	+				-0.7
3,455,641	+				+1.1
3,455,642	-				-0.9
3,455,642	-				+0.0
3,455,642	-				-0.7
3,455,645	+				+1.3
3,455,645	+				-0.7
3,455,645	+				+1.3
3,455,645	+				-1.7
3,455,645	+				-1.3
3,455,646	-				-1.0
3,455,646	-				+0.2
3,455,646	-				+0.3
3,455,646	-				+0.9
3,455,646	-				-0.3
3,455,649	+		DZA65_RS15920	0.10	-0.7
3,455,649	+		DZA65_RS15920	0.10	-0.3
3,455,650	-		DZA65_RS15920	0.10	-1.9
3,455,650	-		DZA65_RS15920	0.10	-1.5
3,455,650	-		DZA65_RS15920	0.10	-0.7
3,455,650	-		DZA65_RS15920	0.10	-0.7
3,455,737	+		DZA65_RS15920	0.22	+1.0
3,455,737	+				-1.3
3,455,737	+		DZA65_RS15920	0.22	-0.5
3,455,737	+		DZA65_RS15920	0.22	-1.6
3,455,737	+		DZA65_RS15920	0.22	-0.9
3,455,738	-		DZA65_RS15920	0.22	+1.7
3,455,766	-		DZA65_RS15920	0.26	-0.9
3,455,818	+		DZA65_RS15920	0.32	-0.3
3,455,818	+				-1.3
3,455,818	+		DZA65_RS15920	0.32	-1.7
3,455,818	+		DZA65_RS15920	0.32	+0.7
3,455,818	+		DZA65_RS15920	0.32	+0.3
3,455,818	+		DZA65_RS15920	0.32	-0.7
3,455,819	-		DZA65_RS15920	0.33	+0.3
3,455,819	-		DZA65_RS15920	0.33	+1.2
3,455,819	-		DZA65_RS15920	0.33	+1.7
3,455,819	-		DZA65_RS15920	0.33	+0.3
3,455,819	-		DZA65_RS15920	0.33	-1.3
3,455,821	+		DZA65_RS15920	0.33	+0.3
3,455,821	+		DZA65_RS15920	0.33	-0.7
3,455,821	+		DZA65_RS15920	0.33	-3.3
3,455,821	+		DZA65_RS15920	0.33	-1.5
3,455,822	-		DZA65_RS15920	0.33	-1.5
3,455,822	-		DZA65_RS15920	0.33	-0.5
3,455,822	-		DZA65_RS15920	0.33	-2.9
3,455,835	-		DZA65_RS15920	0.35	+3.0
3,455,835	-		DZA65_RS15920	0.35	+0.7
3,455,855	+		DZA65_RS15920	0.37	-1.0
3,455,855	+		DZA65_RS15920	0.37	-2.0
3,455,855	+		DZA65_RS15920	0.37	-1.7
3,455,855	+		DZA65_RS15920	0.37	-0.7
3,455,856	-		DZA65_RS15920	0.37	+0.3
3,455,856	-		DZA65_RS15920	0.37	-0.7
3,455,856	-		DZA65_RS15920	0.37	-0.7
3,455,856	-		DZA65_RS15920	0.37	-2.5
3,455,856	-		DZA65_RS15920	0.37	+1.3
3,455,856	-		DZA65_RS15920	0.37	-2.4
3,455,856	-		DZA65_RS15920	0.37	-0.7
3,455,856	-		DZA65_RS15920	0.37	+1.3
3,455,856	-		DZA65_RS15920	0.37	-1.2
3,455,856	-		DZA65_RS15920	0.37	-0.5
3,455,856	-		DZA65_RS15920	0.37	+2.0
3,455,877	+		DZA65_RS15920	0.40	+0.8
3,455,877	+		DZA65_RS15920	0.40	-1.0
3,455,877	+		DZA65_RS15920	0.40	+2.9
3,455,877	+		DZA65_RS15920	0.40	-0.3
3,455,877	+		DZA65_RS15920	0.40	-0.6
3,455,877	+		DZA65_RS15920	0.40	-1.3
3,455,877	+		DZA65_RS15920	0.40	+1.1
3,455,877	+				-1.9
3,455,877	+		DZA65_RS15920	0.40	+1.3
3,455,877	+		DZA65_RS15920	0.40	-0.3
3,455,878	-		DZA65_RS15920	0.40	+0.3
3,455,878	-		DZA65_RS15920	0.40	-0.3
3,455,878	-		DZA65_RS15920	0.40	+0.1
3,455,878	-		DZA65_RS15920	0.40	-0.7
3,455,878	-		DZA65_RS15920	0.40	+1.3
3,455,878	-		DZA65_RS15920	0.40	-2.2
3,455,878	-		DZA65_RS15920	0.40	-1.0
3,455,878	-		DZA65_RS15920	0.40	-1.5
3,455,889	-		DZA65_RS15920	0.42	-0.0
3,455,964	-		DZA65_RS15920	0.52	-1.3
3,455,973	+		DZA65_RS15920	0.53	+0.1
3,455,973	+		DZA65_RS15920	0.53	-0.3
3,455,973	+		DZA65_RS15920	0.53	-2.8
3,455,973	+		DZA65_RS15920	0.53	+0.5
3,455,973	+		DZA65_RS15920	0.53	-1.0
3,455,973	+		DZA65_RS15920	0.53	-0.3
3,455,973	+		DZA65_RS15920	0.53	-0.7
3,455,973	+		DZA65_RS15920	0.53	-0.0
3,455,973	+		DZA65_RS15920	0.53	-1.3
3,455,973	+		DZA65_RS15920	0.53	+0.6
3,455,973	+		DZA65_RS15920	0.53	+1.3
3,455,973	+		DZA65_RS15920	0.53	+1.2
3,455,973	+		DZA65_RS15920	0.53	+0.5
3,455,974	-		DZA65_RS15920	0.53	-0.7
3,455,974	-		DZA65_RS15920	0.53	-1.5
3,455,974	-		DZA65_RS15920	0.53	-0.3
3,455,974	-		DZA65_RS15920	0.53	-2.5
3,455,974	-		DZA65_RS15920	0.53	-0.7
3,455,974	-		DZA65_RS15920	0.53	-0.7
3,455,974	-		DZA65_RS15920	0.53	-0.3
3,455,974	-		DZA65_RS15920	0.53	+0.6
3,455,974	-		DZA65_RS15920	0.53	-0.0
3,455,974	-		DZA65_RS15920	0.53	-1.0
3,455,974	-		DZA65_RS15920	0.53	-0.2
3,455,980	+		DZA65_RS15920	0.54	-2.6
3,456,047	+		DZA65_RS15920	0.63	+1.5
3,456,176	-		DZA65_RS15920	0.80	-1.5
3,456,184	-		DZA65_RS15920	0.81	-1.3
3,456,193	+		DZA65_RS15920	0.82	-0.7
3,456,199	+		DZA65_RS15920	0.83	-0.5
3,456,199	+		DZA65_RS15920	0.83	-1.5
3,456,232	+		DZA65_RS15920	0.87	-1.0
3,456,232	+		DZA65_RS15920	0.87	-1.0
3,456,232	+		DZA65_RS15920	0.87	-0.3
3,456,232	+		DZA65_RS15920	0.87	-0.5
3,456,238	+		DZA65_RS15920	0.88	-0.3
3,456,239	-		DZA65_RS15920	0.88	+0.4
3,456,239	-		DZA65_RS15920	0.88	-1.6
3,456,260	+				+0.9
3,456,260	+				-0.5
3,456,260	+				-2.0
3,456,260	+				-1.7
3,456,261	-				-2.0
3,456,261	-				-1.3
3,456,261	-				-0.8
3,456,278	+				-1.5
3,456,278	+				+1.6
3,456,278	+				-1.5
3,456,279	-				-0.3
3,456,310	+				-2.0
3,456,311	-				-0.3
3,456,311	-				-0.3
3,456,328	+				-1.4
3,456,329	-				-1.0
3,456,329	-				+1.7
3,456,347	-				+0.8
3,456,356	-				-0.3
3,456,429	+				+2.0
3,456,429	+				-2.5
3,456,429	+				+1.3
3,456,429	+				-1.9
3,456,439	+				-1.3
3,456,439	+				-0.5
3,456,440	-				-1.3
3,456,440	-				+1.0
3,456,440	-				+0.8
3,456,507	-		DZA65_RS15925	0.10	-1.0
3,456,507	-		DZA65_RS15925	0.10	+0.6
3,456,507	-		DZA65_RS15925	0.10	+0.7
3,456,511	+		DZA65_RS15925	0.11	-1.5
3,456,517	+		DZA65_RS15925	0.12	+0.9
3,456,518	-		DZA65_RS15925	0.12	-0.2
3,456,518	-		DZA65_RS15925	0.12	-2.0
3,456,518	-		DZA65_RS15925	0.12	-0.3
3,456,518	-		DZA65_RS15925	0.12	+0.3
3,456,640	+		DZA65_RS15925	0.31	+3.0
3,456,640	+		DZA65_RS15925	0.31	+2.1
3,456,640	+		DZA65_RS15925	0.31	+1.8
3,456,640	+		DZA65_RS15925	0.31	-1.7
3,456,640	+		DZA65_RS15925	0.31	+2.0
3,456,640	+		DZA65_RS15925	0.31	-0.4
3,456,640	+		DZA65_RS15925	0.31	-1.3
3,456,640	+		DZA65_RS15925	0.31	+0.3
3,456,641	-		DZA65_RS15925	0.31	-0.3
3,456,641	-		DZA65_RS15925	0.31	+1.3
3,456,641	-		DZA65_RS15925	0.31	+1.3
3,456,641	-		DZA65_RS15925	0.31	-2.4
3,456,641	-		DZA65_RS15925	0.31	-0.0
3,456,641	-		DZA65_RS15925	0.31	+1.3
3,456,641	-		DZA65_RS15925	0.31	-0.1
3,456,641	-		DZA65_RS15925	0.31	+0.3
3,456,641	-		DZA65_RS15925	0.31	+0.9
3,456,641	-		DZA65_RS15925	0.31	-0.7
3,456,641	-		DZA65_RS15925	0.31	-0.3
3,456,641	-		DZA65_RS15925	0.31	+0.3
3,456,641	-		DZA65_RS15925	0.31	-0.0
3,456,641	-		DZA65_RS15925	0.31	-1.3
3,456,641	-		DZA65_RS15925	0.31	-1.5
3,456,642	+		DZA65_RS15925	0.32	-1.0
3,456,642	+		DZA65_RS15925	0.32	-0.8
3,456,642	+		DZA65_RS15925	0.32	+0.8
3,456,642	+		DZA65_RS15925	0.32	+0.1
3,456,642	+		DZA65_RS15925	0.32	-0.5
3,456,642	+		DZA65_RS15925	0.32	-1.3
3,456,643	-		DZA65_RS15925	0.32	+0.3
3,456,643	-		DZA65_RS15925	0.32	+0.9
3,456,643	-		DZA65_RS15925	0.32	+3.7
3,456,648	+		DZA65_RS15925	0.33	+0.5
3,456,648	+		DZA65_RS15925	0.33	-2.5
3,456,648	+		DZA65_RS15925	0.33	+0.3
3,456,648	+		DZA65_RS15925	0.33	-2.0
3,456,649	-		DZA65_RS15925	0.33	-1.0
3,456,669	-		DZA65_RS15925	0.36	+0.7
3,456,669	-		DZA65_RS15925	0.36	+0.7
3,456,669	-		DZA65_RS15925	0.36	-1.3
3,456,672	+		DZA65_RS15925	0.36	-0.5
3,456,672	+		DZA65_RS15925	0.36	-1.5
3,456,672	+		DZA65_RS15925	0.36	-0.3
3,456,672	+		DZA65_RS15925	0.36	+0.3
3,456,672	+				+2.3
3,456,673	-		DZA65_RS15925	0.37	-0.4
3,456,673	-				+1.5
3,456,673	-		DZA65_RS15925	0.37	+0.3
3,456,673	-		DZA65_RS15925	0.37	-0.8
3,456,673	-		DZA65_RS15925	0.37	-2.0
3,456,727	+		DZA65_RS15925	0.45	-0.7
3,456,744	+		DZA65_RS15925	0.48	-2.4
3,456,744	+		DZA65_RS15925	0.48	-0.7
3,456,745	-		DZA65_RS15925	0.48	+0.1
3,456,749	+		DZA65_RS15925	0.49	+0.3
3,456,750	-		DZA65_RS15925	0.49	+0.3
3,456,750	-		DZA65_RS15925	0.49	+1.3
3,456,822	+		DZA65_RS15925	0.60	-1.3
3,456,822	+		DZA65_RS15925	0.60	-0.4
3,456,823	-		DZA65_RS15925	0.60	-2.2
3,456,823	-		DZA65_RS15925	0.60	-0.3
3,456,932	-		DZA65_RS15925	0.78	-1.3
3,456,932	-		DZA65_RS15925	0.78	+3.7
3,456,947	+		DZA65_RS15925	0.80	+0.9
3,456,982	+		DZA65_RS15925	0.86	+0.4
3,456,982	+		DZA65_RS15925	0.86	+1.6
3,456,982	+		DZA65_RS15925	0.86	+1.1
3,456,982	+		DZA65_RS15925	0.86	+0.1
3,456,982	+				+1.3
3,456,982	+		DZA65_RS15925	0.86	+2.3
3,456,982	+		DZA65_RS15925	0.86	+0.6
3,456,982	+		DZA65_RS15925	0.86	-2.4
3,456,982	+		DZA65_RS15925	0.86	-1.7
3,456,982	+		DZA65_RS15925	0.86	-0.9
3,456,983	-		DZA65_RS15925	0.86	-2.2
3,456,983	-		DZA65_RS15925	0.86	-0.3
3,456,983	-		DZA65_RS15925	0.86	-0.7
3,456,983	-		DZA65_RS15925	0.86	-0.7
3,456,983	-		DZA65_RS15925	0.86	-1.7
3,456,983	-		DZA65_RS15925	0.86	-0.4
3,456,986	+		DZA65_RS15925	0.86	+0.3
3,456,986	+		DZA65_RS15925	0.86	+0.3
3,456,986	+		DZA65_RS15925	0.86	-3.0
3,456,986	+		DZA65_RS15925	0.86	-0.6
3,456,986	+		DZA65_RS15925	0.86	-2.0
3,456,986	+		DZA65_RS15925	0.86	+2.3
3,456,986	+				-1.9
3,456,986	+		DZA65_RS15925	0.86	-1.0
3,456,986	+		DZA65_RS15925	0.86	-1.7
3,456,986	+		DZA65_RS15925	0.86	+2.6
3,456,986	+		DZA65_RS15925	0.86	-1.1
3,456,986	+		DZA65_RS15925	0.86	+1.3
3,456,986	+		DZA65_RS15925	0.86	-0.3
3,456,986	+		DZA65_RS15925	0.86	-0.0
3,456,986	+		DZA65_RS15925	0.86	-0.7
3,456,986	+		DZA65_RS15925	0.86	-0.7
3,456,987	-		DZA65_RS15925	0.87	-0.3
3,456,987	-		DZA65_RS15925	0.87	+1.3
3,456,987	-		DZA65_RS15925	0.87	-1.0
3,456,987	-		DZA65_RS15925	0.87	-0.7
3,456,987	-		DZA65_RS15925	0.87	+0.3
3,456,987	-		DZA65_RS15925	0.87	+0.0
3,456,987	-		DZA65_RS15925	0.87	-1.3
3,456,987	-		DZA65_RS15925	0.87	-0.7
3,456,987	-		DZA65_RS15925	0.87	+1.3
3,456,987	-		DZA65_RS15925	0.87	+1.3
3,456,987	-		DZA65_RS15925	0.87	-0.7
3,457,021	+				-1.8
3,457,022	-				-0.3
3,457,022	-				-1.7
3,457,078	+				-2.7
3,457,090	+				+0.3
3,457,090	+				-2.4
3,457,093	+				-1.7
3,457,158	-				+1.3
3,457,163	+				+2.4
3,457,163	+				+0.3
3,457,163	+				-1.7
3,457,163	+				-1.5
3,457,164	-				-2.2
3,457,164	-				-0.3
3,457,164	-				+0.8
3,457,164	-				+1.3
3,457,164	-				+0.3
3,457,164	-				-1.3
3,457,170	+				+0.0
3,457,170	+				+0.8
3,457,171	-				+0.8
3,457,189	+				-0.3
3,457,189	+				-0.2
3,457,190	-				-1.7
3,457,190	-				+1.5
3,457,218	+				-2.2
3,457,219	-				-0.6
3,457,228	-				-0.7
3,457,316	+		DZA65_RS15930	0.20	-0.1
3,457,317	-		DZA65_RS15930	0.20	-1.9
3,457,317	-		DZA65_RS15930	0.20	+0.6
3,457,370	+		DZA65_RS15930	0.31	-0.5
3,457,371	-		DZA65_RS15930	0.32	-1.2
3,457,419	+		DZA65_RS15930	0.42	-0.7
3,457,419	+		DZA65_RS15930	0.42	+0.7
3,457,419	+		DZA65_RS15930	0.42	-2.7
3,457,419	+		DZA65_RS15930	0.42	-2.9
3,457,419	+		DZA65_RS15930	0.42	+1.9
3,457,419	+		DZA65_RS15930	0.42	-1.9
3,457,419	+		DZA65_RS15930	0.42	-1.9
3,457,419	+		DZA65_RS15930	0.42	-0.7
3,457,420	-		DZA65_RS15930	0.42	+2.4
3,457,420	-		DZA65_RS15930	0.42	-1.4
3,457,420	-		DZA65_RS15930	0.42	+0.1
3,457,447	+		DZA65_RS15930	0.48	-2.4
3,457,471	+		DZA65_RS15930	0.53	-1.0
3,457,471	+		DZA65_RS15930	0.53	+1.3
3,457,490	+		DZA65_RS15930	0.58	+2.0
3,457,490	+		DZA65_RS15930	0.58	-0.3
3,457,490	+		DZA65_RS15930	0.58	-0.8
3,457,491	-				-1.5
3,457,491	-				+1.8
3,457,491	-		DZA65_RS15930	0.58	-1.3
3,457,491	-		DZA65_RS15930	0.58	-1.3
3,457,491	-		DZA65_RS15930	0.58	-1.3
3,457,491	-		DZA65_RS15930	0.58	+0.3
3,457,502	-		DZA65_RS15930	0.60	-0.6
3,457,513	-		DZA65_RS15930	0.63	-3.1
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3,457,524	+		DZA65_RS15930	0.65	+3.2
3,457,544	+		DZA65_RS15930	0.69	-0.7
3,457,544	+		DZA65_RS15930	0.69	-0.3
3,457,545	-		DZA65_RS15930	0.69	+2.0
3,457,561	-		DZA65_RS15930	0.73	+1.2
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3,457,574	-		DZA65_RS15930	0.76	-0.3
3,457,574	-		DZA65_RS15930	0.76	-1.5
3,457,591	+		DZA65_RS15930	0.80	-1.7
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3,457,591	+				-1.0
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3,457,592	-		DZA65_RS15930	0.80	+0.6
3,457,707	-				-0.0
3,457,707	-				+1.3
3,457,720	+				+0.9
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3,457,721	-				-1.4
3,457,721	-				-1.7
3,457,721	-				-0.3
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3,457,746	-		DZA65_RS15935	0.13	+0.3
3,457,746	-		DZA65_RS15935	0.13	+2.1
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3,457,747	+		DZA65_RS15935	0.13	-2.8
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3,457,748	-		DZA65_RS15935	0.13	-0.0
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3,457,748	-		DZA65_RS15935	0.13	-1.8
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3,457,753	-		DZA65_RS15935	0.13	+2.0
3,457,782	+		DZA65_RS15935	0.17	+1.2
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3,457,831	-		DZA65_RS15935	0.22	-1.3
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3,457,831	-		DZA65_RS15935	0.22	+3.3
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3,457,848	+		DZA65_RS15935	0.24	+0.3
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3,457,849	-		DZA65_RS15935	0.24	-1.9
3,457,849	-		DZA65_RS15935	0.24	-1.3
3,457,849	-		DZA65_RS15935	0.24	-0.7
3,457,849	-		DZA65_RS15935	0.24	-1.9
3,457,849	-		DZA65_RS15935	0.24	+1.9
3,457,889	+		DZA65_RS15935	0.29	-2.2
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3,457,889	+		DZA65_RS15935	0.29	-0.1
3,457,889	+		DZA65_RS15935	0.29	-1.2
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3,457,890	-		DZA65_RS15935	0.29	+1.2
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3,457,893	+		DZA65_RS15935	0.29	+1.0
3,457,893	+		DZA65_RS15935	0.29	+0.9
3,457,893	+		DZA65_RS15935	0.29	-1.9
3,457,893	+		DZA65_RS15935	0.29	+0.6
3,457,893	+		DZA65_RS15935	0.29	+1.3
3,457,894	-		DZA65_RS15935	0.29	-0.7
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3,457,894	-		DZA65_RS15935	0.29	-1.0
3,457,894	-		DZA65_RS15935	0.29	+0.5
3,457,894	-		DZA65_RS15935	0.29	+1.1
3,457,894	-		DZA65_RS15935	0.29	-1.0
3,457,894	-		DZA65_RS15935	0.29	-1.7
3,457,917	+		DZA65_RS15935	0.32	-1.7
3,457,925	+		DZA65_RS15935	0.33	-0.3
3,458,007	+		DZA65_RS15935	0.42	-1.7
3,458,051	+		DZA65_RS15935	0.47	+0.7
3,458,051	+		DZA65_RS15935	0.47	+2.7
3,458,051	+		DZA65_RS15935	0.47	-1.3
3,458,052	-		DZA65_RS15935	0.47	-0.9