Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15810

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,431,969	+		DZA65_RS15805	0.37	+2.9
3,432,101	+		DZA65_RS15805	0.50	+0.7
3,432,139	+		DZA65_RS15805	0.54	-1.0
3,432,269	+		DZA65_RS15805	0.66	-2.3
3,432,289	+		DZA65_RS15805	0.68	+2.5
3,432,290	-		DZA65_RS15805	0.68	-0.3
3,432,353	+		DZA65_RS15805	0.74	-1.0
3,432,353	+		DZA65_RS15805	0.74	+1.6
3,432,354	-		DZA65_RS15805	0.74	+0.8
3,432,354	-		DZA65_RS15805	0.74	+0.3
3,432,383	+		DZA65_RS15805	0.77	+1.8
3,432,416	+		DZA65_RS15805	0.80	+1.3
3,432,416	+		DZA65_RS15805	0.80	-2.0
3,432,417	-		DZA65_RS15805	0.80	+3.6
3,432,438	+		DZA65_RS15805	0.82	-1.1
3,432,438	+		DZA65_RS15805	0.82	-0.7
3,432,438	+		DZA65_RS15805	0.82	+0.5
3,432,439	-		DZA65_RS15805	0.83	+3.1
3,432,439	-		DZA65_RS15805	0.83	+2.3
3,432,439	-		DZA65_RS15805	0.83	-1.0
3,432,439	-		DZA65_RS15805	0.83	+0.3
3,432,439	-		DZA65_RS15805	0.83	+2.7
3,432,439	-		DZA65_RS15805	0.83	+0.7
3,432,480	+		DZA65_RS15805	0.86	-2.3
3,432,480	+		DZA65_RS15805	0.86	-1.3
3,432,482	+		DZA65_RS15805	0.87	+1.4
3,432,482	+		DZA65_RS15805	0.87	+1.9
3,432,513	+		DZA65_RS15805	0.90	+1.3
3,432,514	-		DZA65_RS15805	0.90	+3.7
3,432,534	-				-1.9
3,432,553	-				-2.2
3,432,553	-				-0.5
3,432,553	-				-1.0
3,432,553	-				-0.3
3,432,576	-				+1.8
3,432,587	+				+0.2
3,432,587	+				+1.0
3,432,588	-				-0.1
3,432,594	-				-1.3
3,432,695	+				-1.0
3,432,695	+				-0.3
3,432,695	+				+0.9
3,432,695	+				-1.0
3,432,695	+				+1.1
3,432,695	+				-0.3
3,432,696	-				-0.3
3,432,696	-				-0.0
3,432,696	-				-0.7
3,432,696	-				-1.3
3,432,696	-				+0.4
3,432,696	-				+1.9
3,432,696	-				-1.3
3,432,779	-				-1.0
3,432,804	+				-1.6
3,432,804	+				-0.7
3,432,804	+				-0.7
3,432,804	+				-0.0
3,432,804	+				-1.5
3,432,804	+				-2.3
3,432,805	-				-2.4
3,432,805	-				-0.7
3,432,805	-				-0.7
3,432,805	-				-1.3
3,432,851	+				+0.3
3,432,851	+				-1.5
3,432,851	+				+1.8
3,432,851	+				-1.5
3,432,851	+				-1.5
3,432,852	-				-2.3
3,432,852	-				+1.5
3,432,852	-				+0.3
3,432,852	-				-1.3
3,432,862	+				+0.5
3,432,869	+				-0.7
3,432,885	+				+1.6
3,432,885	+				+0.7
3,432,885	+				+3.1
3,432,904	-				-0.5
3,432,904	-				-0.7
3,432,950	-				+0.3
3,432,961	+				-0.3
3,432,961	+				-0.7
3,432,961	+				+1.3
3,432,961	+				-0.1
3,432,961	+				+0.3
3,432,961	+				-1.2
3,432,961	+				-0.3
3,432,961	+				-0.7
3,432,962	-				-0.5
3,432,962	-				-1.5
3,432,962	-				-0.7
3,432,962	-				-0.5
3,432,962	-				+0.2
3,433,012	-				-0.3
3,433,102	+				-0.7
3,433,102	+		DZA65_RS15810	0.11	-0.7
3,433,161	+		DZA65_RS15810	0.16	-0.5
3,433,161	+		DZA65_RS15810	0.16	-0.6
3,433,161	+		DZA65_RS15810	0.16	-0.9
3,433,162	-		DZA65_RS15810	0.16	+1.0
3,433,162	-		DZA65_RS15810	0.16	+0.8
3,433,162	-		DZA65_RS15810	0.16	-2.9
3,433,162	-		DZA65_RS15810	0.16	+3.6
3,433,162	-		DZA65_RS15810	0.16	-1.2
3,433,171	+		DZA65_RS15810	0.17	+3.3
3,433,171	+		DZA65_RS15810	0.17	-1.3
3,433,177	+		DZA65_RS15810	0.17	+1.2
3,433,177	+		DZA65_RS15810	0.17	+1.1
3,433,178	-		DZA65_RS15810	0.17	+0.3
3,433,178	-		DZA65_RS15810	0.17	+0.3
3,433,178	-		DZA65_RS15810	0.17	-1.2
3,433,283	-		DZA65_RS15810	0.26	+0.3
3,433,289	+		DZA65_RS15810	0.27	-1.8
3,433,324	+		DZA65_RS15810	0.29	+2.2
3,433,324	+		DZA65_RS15810	0.29	+0.6
3,433,324	+		DZA65_RS15810	0.29	-1.3
3,433,324	+		DZA65_RS15810	0.29	+0.3
3,433,325	-		DZA65_RS15810	0.29	-1.0
3,433,325	-		DZA65_RS15810	0.29	-1.3
3,433,325	-		DZA65_RS15810	0.29	+0.7
3,433,325	-		DZA65_RS15810	0.29	-0.7
3,433,325	-		DZA65_RS15810	0.29	+0.6
3,433,325	-		DZA65_RS15810	0.29	-1.0
3,433,347	+		DZA65_RS15810	0.31	-0.9
3,433,348	-		DZA65_RS15810	0.31	-0.7
3,433,369	+		DZA65_RS15810	0.33	+1.6
3,433,369	+		DZA65_RS15810	0.33	+1.6
3,433,369	+		DZA65_RS15810	0.33	-0.7
3,433,369	+		DZA65_RS15810	0.33	-1.6
3,433,369	+		DZA65_RS15810	0.33	-1.3
3,433,370	-		DZA65_RS15810	0.33	+2.3
3,433,370	-		DZA65_RS15810	0.33	-0.9
3,433,370	-		DZA65_RS15810	0.33	-2.0
3,433,441	+		DZA65_RS15810	0.39	-0.9
3,433,441	+		DZA65_RS15810	0.39	-0.3
3,433,441	+		DZA65_RS15810	0.39	-0.4
3,433,442	-		DZA65_RS15810	0.39	-0.1
3,433,442	-		DZA65_RS15810	0.39	+2.1
3,433,442	-		DZA65_RS15810	0.39	-1.0
3,433,442	-		DZA65_RS15810	0.39	-0.3
3,433,528	+		DZA65_RS15810	0.46	+0.3
3,433,528	+		DZA65_RS15810	0.46	-2.0
3,433,528	+		DZA65_RS15810	0.46	-0.0
3,433,528	+		DZA65_RS15810	0.46	-1.3
3,433,528	+		DZA65_RS15810	0.46	-0.0
3,433,528	+		DZA65_RS15810	0.46	+2.1
3,433,528	+		DZA65_RS15810	0.46	-0.7
3,433,528	+		DZA65_RS15810	0.46	-0.7
3,433,529	-		DZA65_RS15810	0.46	+0.5
3,433,529	-		DZA65_RS15810	0.46	+1.3
3,433,529	-		DZA65_RS15810	0.46	-0.3
3,433,529	-		DZA65_RS15810	0.46	-2.7
3,433,529	-		DZA65_RS15810	0.46	+1.0
3,433,529	-		DZA65_RS15810	0.46	+0.1
3,433,782	+		DZA65_RS15810	0.67	+0.3
3,433,783	-		DZA65_RS15810	0.67	+0.5
3,433,783	-		DZA65_RS15810	0.67	-0.3
3,433,783	-		DZA65_RS15810	0.67	-1.5
3,433,783	-		DZA65_RS15810	0.67	-1.5
3,433,813	+		DZA65_RS15810	0.70	-1.1
3,433,814	-		DZA65_RS15810	0.70	-0.7
3,433,885	+		DZA65_RS15810	0.76	-2.5
3,433,885	+		DZA65_RS15810	0.76	-1.5
3,433,886	-		DZA65_RS15810	0.76	+0.4
3,433,886	-		DZA65_RS15810	0.76	+0.7
3,434,031	+		DZA65_RS15810	0.88	-1.0
3,434,053	+		DZA65_RS15810	0.89	+2.3
3,434,053	+		DZA65_RS15810	0.89	+1.3
3,434,053	+		DZA65_RS15810	0.89	-1.3
3,434,053	+		DZA65_RS15810	0.89	-0.3
3,434,053	+		DZA65_RS15810	0.89	+4.7
3,434,054	-		DZA65_RS15810	0.89	+1.5
3,434,054	-		DZA65_RS15810	0.89	-0.0
3,434,054	-		DZA65_RS15810	0.89	-1.3
3,434,054	-		DZA65_RS15810	0.89	+0.5
3,434,055	+		DZA65_RS15810	0.90	-0.9
3,434,055	+		DZA65_RS15810	0.90	+0.3
3,434,055	+		DZA65_RS15810	0.90	-0.5
3,434,055	+		DZA65_RS15810	0.90	-0.9
3,434,055	+		DZA65_RS15810	0.90	-0.7
3,434,055	+		DZA65_RS15810	0.90	+0.3
3,434,055	+		DZA65_RS15810	0.90	+2.0
3,434,055	+		DZA65_RS15810	0.90	-2.7
3,434,056	-		DZA65_RS15810	0.90	-1.7
3,434,056	-		DZA65_RS15810	0.90	-0.3
3,434,056	-		DZA65_RS15810	0.90	-0.5
3,434,056	-		DZA65_RS15810	0.90	+1.4
3,434,056	-		DZA65_RS15810	0.90	-1.9
3,434,116	+				+0.6
3,434,117	-				+0.3
3,434,117	-				+0.1
3,434,117	-				+0.5
3,434,117	-				+2.2
3,434,123	-				-0.3
3,434,123	-				-1.3
3,434,138	+				+3.7
3,434,139	-				-1.2
3,434,164	-				-1.5
3,434,164	-				+1.3
3,434,179	+				-2.0
3,434,179	+				+0.7
3,434,180	-				-0.7
3,434,180	-				+1.9
3,434,180	-				-0.8
3,434,180	-				-1.9
3,434,180	-				-1.7
3,434,180	-				-0.9
3,434,192	+				-0.7
3,434,192	+				-1.0
3,434,192	+				-0.1
3,434,192	+				-0.3
3,434,192	+				+1.3
3,434,192	+				-1.0
3,434,193	-				-0.3
3,434,193	-				-1.7
3,434,193	-				+0.4
3,434,193	-				+1.3
3,434,193	-				-0.5
3,434,193	-				+1.3
3,434,193	-				-1.3
3,434,193	-				-1.7
3,434,323	+		DZA65_RS15815	0.12	-0.3
3,434,323	+		DZA65_RS15815	0.12	+0.3
3,434,323	+		DZA65_RS15815	0.12	+0.7
3,434,323	+		DZA65_RS15815	0.12	+0.5
3,434,323	+		DZA65_RS15815	0.12	+1.7
3,434,323	+		DZA65_RS15815	0.12	-0.8
3,434,324	-		DZA65_RS15815	0.12	-2.2
3,434,324	-		DZA65_RS15815	0.12	+1.4
3,434,324	-		DZA65_RS15815	0.12	+0.3
3,434,324	-		DZA65_RS15815	0.12	-1.0
3,434,324	-		DZA65_RS15815	0.12	+0.8
3,434,324	-		DZA65_RS15815	0.12	-0.2
3,434,324	-		DZA65_RS15815	0.12	-1.7
3,434,328	-		DZA65_RS15815	0.13	-0.3
3,434,328	-		DZA65_RS15815	0.13	-1.5
3,434,338	+		DZA65_RS15815	0.14	-1.3
3,434,339	-		DZA65_RS15815	0.14	-0.3
3,434,549	-		DZA65_RS15815	0.34	-1.7
3,434,587	+		DZA65_RS15815	0.38	-1.7
3,434,587	+		DZA65_RS15815	0.38	-1.3
3,434,588	-		DZA65_RS15815	0.38	-1.3
3,434,588	-		DZA65_RS15815	0.38	-0.7
3,434,683	+		DZA65_RS15815	0.48	-0.8
3,434,696	+		DZA65_RS15815	0.49	-0.9
3,434,747	+		DZA65_RS15815	0.54	-3.0
3,434,747	+		DZA65_RS15815	0.54	-1.9
3,434,748	-		DZA65_RS15815	0.54	-0.0
3,434,779	+		DZA65_RS15815	0.57	-0.7
3,434,779	+		DZA65_RS15815	0.57	+0.8
3,434,779	+		DZA65_RS15815	0.57	+0.3
3,434,780	-		DZA65_RS15815	0.57	-3.4
3,434,829	+		DZA65_RS15815	0.62	-0.7
3,434,829	+		DZA65_RS15815	0.62	-0.7
3,434,829	+		DZA65_RS15815	0.62	-0.3
3,434,829	+		DZA65_RS15815	0.62	-0.3
3,434,829	+		DZA65_RS15815	0.62	-0.3
3,434,829	+		DZA65_RS15815	0.62	+0.5
3,434,829	+		DZA65_RS15815	0.62	-0.7
3,434,830	-		DZA65_RS15815	0.62	-1.5
3,434,830	-		DZA65_RS15815	0.62	+2.0
3,434,830	-		DZA65_RS15815	0.62	-1.0
3,434,833	+		DZA65_RS15815	0.62	-0.7
3,434,833	+		DZA65_RS15815	0.62	-0.3
3,434,833	+		DZA65_RS15815	0.62	-1.5
3,434,833	+		DZA65_RS15815	0.62	-1.7
3,434,833	+		DZA65_RS15815	0.62	-0.3
3,434,834	-		DZA65_RS15815	0.62	+0.2
3,434,834	-		DZA65_RS15815	0.62	-1.0
3,434,893	+		DZA65_RS15815	0.68	-0.7
3,434,918	-		DZA65_RS15815	0.71	+0.6
3,435,014	-		DZA65_RS15815	0.80	+0.5
3,435,032	-		DZA65_RS15815	0.82	-0.7
3,435,032	-		DZA65_RS15815	0.82	+2.2
3,435,059	-		DZA65_RS15815	0.84	-1.5
3,435,161	-				-0.7
3,435,162	+				+4.6