Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15705

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,409,443	+		DZA65_RS15695	0.46	-1.7
3,409,443	+		DZA65_RS15695	0.46	+0.7
3,409,443	+		DZA65_RS15695	0.46	-1.3
3,409,444	-		DZA65_RS15695	0.47	+0.1
3,409,444	-		DZA65_RS15695	0.47	-1.3
3,409,444	-		DZA65_RS15695	0.47	+2.6
3,409,444	-		DZA65_RS15695	0.47	-1.5
3,409,495	+		DZA65_RS15695	0.55	+1.5
3,409,495	+		DZA65_RS15695	0.55	-0.9
3,409,495	+		DZA65_RS15695	0.55	-1.9
3,409,496	-		DZA65_RS15695	0.55	+0.3
3,409,496	-		DZA65_RS15695	0.55	-1.2
3,409,496	-		DZA65_RS15695	0.55	+1.3
3,409,519	+		DZA65_RS15695	0.59	+0.5
3,409,520	-		DZA65_RS15695	0.59	+1.3
3,409,520	-		DZA65_RS15695	0.59	-1.5
3,409,520	-		DZA65_RS15695	0.59	-1.1
3,409,548	+		DZA65_RS15695	0.63	-0.7
3,409,548	+		DZA65_RS15695	0.63	-2.1
3,409,548	+		DZA65_RS15695	0.63	-0.7
3,409,548	+		DZA65_RS15695	0.63	+0.8
3,409,568	-		DZA65_RS15695	0.67	-3.1
3,409,623	+		DZA65_RS15695	0.76	-1.9
3,409,624	-		DZA65_RS15695	0.76	+1.8
3,409,624	-		DZA65_RS15695	0.76	-1.9
3,409,716	+				-1.7
3,409,716	+				+0.4
3,409,716	+				-1.7
3,409,854	+		DZA65_RS15700	0.12	-0.5
3,409,855	-		DZA65_RS15700	0.12	+2.9
3,409,907	+		DZA65_RS15700	0.25	+0.0
3,409,908	-		DZA65_RS15700	0.25	+0.1
3,409,940	+		DZA65_RS15700	0.33	-0.5
3,410,042	+		DZA65_RS15700	0.58	-2.5
3,410,042	+		DZA65_RS15700	0.58	-1.1
3,410,043	-		DZA65_RS15700	0.59	+0.3
3,410,043	-		DZA65_RS15700	0.59	-1.3
3,410,046	+		DZA65_RS15700	0.59	+0.3
3,410,046	+		DZA65_RS15700	0.59	+0.3
3,410,046	+		DZA65_RS15700	0.59	+1.5
3,410,046	+		DZA65_RS15700	0.59	-0.1
3,410,047	-		DZA65_RS15700	0.60	+1.6
3,410,047	-		DZA65_RS15700	0.60	-0.3
3,410,047	-		DZA65_RS15700	0.60	+0.1
3,410,106	+		DZA65_RS15700	0.74	-0.8
3,410,200	+				-0.8
3,410,200	+				-3.2
3,410,200	+				-1.5
3,410,200	+				+2.7
3,410,200	+				-0.5
3,410,201	-				+1.3
3,410,201	-				+0.7
3,410,201	-				-0.7
3,410,223	+				+1.3
3,410,224	-				+1.1
3,410,224	-				-1.5
3,410,224	-				-1.7
3,410,224	-				-1.3
3,410,230	+				+1.3
3,410,230	+				-0.3
3,410,230	+				-2.2
3,410,230	+				-0.3
3,410,231	-				-0.7
3,410,231	-				-1.9
3,410,231	-				-0.3
3,410,269	+				+7.2
3,410,365	+				+3.9
3,410,365	+				+3.3
3,410,365	+				-2.1
3,410,365	+				+4.1
3,410,365	+				-1.3
3,410,366	-				-1.1
3,410,366	-				-2.1
3,410,418	-				-1.3
3,410,480	+				-1.5
3,410,575	+		DZA65_RS15705	0.17	-0.2
3,410,575	+		DZA65_RS15705	0.17	+0.3
3,410,576	-		DZA65_RS15705	0.17	-1.0
3,410,602	+		DZA65_RS15705	0.19	+0.3
3,410,602	+		DZA65_RS15705	0.19	+0.8
3,410,602	+		DZA65_RS15705	0.19	-1.0
3,410,602	+		DZA65_RS15705	0.19	+2.0
3,410,602	+		DZA65_RS15705	0.19	-1.0
3,410,602	+		DZA65_RS15705	0.19	-1.3
3,410,602	+		DZA65_RS15705	0.19	-1.4
3,410,602	+		DZA65_RS15705	0.19	+0.7
3,410,602	+		DZA65_RS15705	0.19	-1.0
3,410,602	+		DZA65_RS15705	0.19	+0.3
3,410,602	+		DZA65_RS15705	0.19	+1.8
3,410,602	+		DZA65_RS15705	0.19	-1.7
3,410,602	+		DZA65_RS15705	0.19	+0.7
3,410,602	+		DZA65_RS15705	0.19	+0.7
3,410,602	+		DZA65_RS15705	0.19	+0.3
3,410,602	+		DZA65_RS15705	0.19	-2.4
3,410,602	+		DZA65_RS15705	0.19	-0.5
3,410,602	+		DZA65_RS15705	0.19	-0.5
3,410,603	-		DZA65_RS15705	0.20	-0.2
3,410,603	-		DZA65_RS15705	0.20	+0.7
3,410,603	-		DZA65_RS15705	0.20	-1.0
3,410,603	-		DZA65_RS15705	0.20	-0.3
3,410,603	-		DZA65_RS15705	0.20	+0.5
3,410,603	-		DZA65_RS15705	0.20	+0.3
3,410,603	-		DZA65_RS15705	0.20	+1.9
3,410,603	-		DZA65_RS15705	0.20	-1.0
3,410,603	-		DZA65_RS15705	0.20	+0.1
3,410,603	-		DZA65_RS15705	0.20	-0.0
3,410,603	-		DZA65_RS15705	0.20	-1.9
3,410,603	-		DZA65_RS15705	0.20	+1.9
3,410,603	-		DZA65_RS15705	0.20	+3.2
3,410,603	-		DZA65_RS15705	0.20	-1.0
3,410,603	-		DZA65_RS15705	0.20	-0.7
3,410,661	+		DZA65_RS15705	0.24	-1.9
3,410,662	-		DZA65_RS15705	0.24	-0.2
3,410,662	-		DZA65_RS15705	0.24	-0.7
3,410,662	-		DZA65_RS15705	0.24	-0.0
3,410,666	+		DZA65_RS15705	0.25	-0.7
3,410,666	+		DZA65_RS15705	0.25	+1.6
3,410,666	+		DZA65_RS15705	0.25	-0.8
3,410,667	-		DZA65_RS15705	0.25	+2.3
3,410,764	+		DZA65_RS15705	0.33	-1.4
3,410,765	-		DZA65_RS15705	0.33	-1.3
3,410,765	-		DZA65_RS15705	0.33	-0.7
3,410,851	+		DZA65_RS15705	0.40	-1.9
3,410,851	+		DZA65_RS15705	0.40	+3.9
3,410,851	+		DZA65_RS15705	0.40	-2.3
3,410,851	+		DZA65_RS15705	0.40	+2.2
3,410,852	-		DZA65_RS15705	0.40	-1.1
3,410,852	-		DZA65_RS15705	0.40	+0.4
3,410,852	-		DZA65_RS15705	0.40	+0.3
3,410,852	-		DZA65_RS15705	0.40	+1.7
3,410,852	-		DZA65_RS15705	0.40	-1.7
3,410,867	+		DZA65_RS15705	0.41	-1.9
3,410,867	+		DZA65_RS15705	0.41	-0.7
3,410,935	+		DZA65_RS15705	0.47	+1.3
3,410,935	+		DZA65_RS15705	0.47	-0.0
3,410,935	+		DZA65_RS15705	0.47	+0.9
3,410,936	-		DZA65_RS15705	0.47	-1.0
3,410,936	-		DZA65_RS15705	0.47	+0.4
3,411,071	+		DZA65_RS15705	0.58	+2.9
3,411,072	-		DZA65_RS15705	0.58	-1.9
3,411,083	+		DZA65_RS15705	0.59	-0.2
3,411,084	-		DZA65_RS15705	0.59	-1.0
3,411,178	+		DZA65_RS15705	0.67	-2.0
3,411,178	+		DZA65_RS15705	0.67	+0.7
3,411,178	+		DZA65_RS15705	0.67	-0.8
3,411,178	+		DZA65_RS15705	0.67	-1.5
3,411,179	-		DZA65_RS15705	0.67	+1.4
3,411,179	-		DZA65_RS15705	0.67	+0.3
3,411,179	-		DZA65_RS15705	0.67	-1.7
3,411,179	-		DZA65_RS15705	0.67	-1.6
3,411,179	-				-1.3
3,411,309	+		DZA65_RS15705	0.77	-0.8
3,411,309	+		DZA65_RS15705	0.77	-1.0
3,411,310	-		DZA65_RS15705	0.77	+0.0
3,411,328	+		DZA65_RS15705	0.79	-1.0
3,411,329	-		DZA65_RS15705	0.79	+0.3
3,411,329	-		DZA65_RS15705	0.79	-2.8
3,411,362	+		DZA65_RS15705	0.82	-0.0
3,411,362	+		DZA65_RS15705	0.82	+1.3
3,411,374	+		DZA65_RS15705	0.83	+3.1
3,411,374	+		DZA65_RS15705	0.83	-0.3
3,411,375	-		DZA65_RS15705	0.83	-0.1
3,411,379	+		DZA65_RS15705	0.83	-0.3
3,411,379	+		DZA65_RS15705	0.83	+0.0
3,411,411	-		DZA65_RS15705	0.86	+1.3
3,411,411	-		DZA65_RS15705	0.86	+2.9
3,411,521	+				-0.0
3,411,522	-				+3.2
3,411,524	+				+1.9
3,411,524	+				-1.8
3,411,524	+				-2.2
3,411,524	+				+0.1
3,411,524	+				-0.2
3,411,525	-				-1.0
3,411,525	-				-0.3
3,411,532	+				+1.0
3,411,532	+				+2.7
3,411,533	-				-0.0
3,411,533	-				-1.6
3,411,533	-				-0.9
3,411,533	-				+0.5
3,411,587	+				+1.3
3,411,587	+				-0.7
3,411,587	+				+0.8
3,411,587	+				-0.9
3,411,587	+				+2.5
3,411,588	-				-1.0
3,411,601	+				+1.9
3,411,602	-				+2.9
3,411,663	+				+3.5
3,411,663	+				+0.1
3,411,679	+				+1.6
3,411,679	+				-1.5
3,411,679	+				-1.5
3,411,679	+				+2.3
3,411,679	+				-0.9
3,411,680	-				-0.4
3,411,680	-				-0.5
3,411,680	-				-1.0
3,411,704	-				-2.4
3,411,828	+				-0.7
3,411,835	-				-1.9
3,411,953	-				+0.3
3,411,974	+				+0.5
3,411,974	+				+1.3
3,411,974	+				-0.3
3,411,975	-				+0.4
3,411,975	-				+0.6
3,411,989	+				-1.6
3,411,990	-				-1.9
3,412,018	+				-0.3
3,412,018	+				+0.4
3,412,018	+				-2.3
3,412,019	-				+1.6
3,412,019	-				+0.3
3,412,019	-				+0.3
3,412,019	-				-1.1
3,412,019	-				-1.3
3,412,019	-				-2.5
3,412,033	+				+3.2
3,412,034	-				+2.1
3,412,099	+		DZA65_RS15710	0.11	+1.9
3,412,099	+		DZA65_RS15710	0.11	-1.3
3,412,099	+		DZA65_RS15710	0.11	-0.6
3,412,216	-		DZA65_RS15710	0.25	-2.2
3,412,216	-		DZA65_RS15710	0.25	+2.9
3,412,216	-		DZA65_RS15710	0.25	+1.3
3,412,216	-		DZA65_RS15710	0.25	-2.4
3,412,216	-		DZA65_RS15710	0.25	+0.5
3,412,216	-		DZA65_RS15710	0.25	-1.5
3,412,271	-		DZA65_RS15710	0.31	-0.9
3,412,281	+		DZA65_RS15710	0.32	-0.1
3,412,486	+		DZA65_RS15710	0.56	-0.3
3,412,486	+		DZA65_RS15710	0.56	-0.5
3,412,521	-		DZA65_RS15710	0.60	-0.7
3,412,564	+		DZA65_RS15710	0.65	+0.9
3,412,564	+		DZA65_RS15710	0.65	-0.7
3,412,564	+		DZA65_RS15710	0.65	-0.3
3,412,564	+		DZA65_RS15710	0.65	+0.3
3,412,564	+		DZA65_RS15710	0.65	-2.4
3,412,565	-		DZA65_RS15710	0.65	-1.5
3,412,565	-		DZA65_RS15710	0.65	-1.1
3,412,565	-		DZA65_RS15710	0.65	-0.7
3,412,565	-		DZA65_RS15710	0.65	+0.1
3,412,565	-		DZA65_RS15710	0.65	-1.1
3,412,584	+		DZA65_RS15710	0.67	-2.7