Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15010

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,276,165	-		DZA65_RS15005	0.40	+0.2
3,276,270	+		DZA65_RS15005	0.47	-0.4
3,276,271	-		DZA65_RS15005	0.47	-2.3
3,276,276	-		DZA65_RS15005	0.47	-0.1
3,276,342	+		DZA65_RS15005	0.52	-0.1
3,276,342	+		DZA65_RS15005	0.52	+2.2
3,276,463	+		DZA65_RS15005	0.60	-1.1
3,276,463	+		DZA65_RS15005	0.60	-1.6
3,276,463	+		DZA65_RS15005	0.60	-1.6
3,276,464	-		DZA65_RS15005	0.60	-1.7
3,276,477	+		DZA65_RS15005	0.61	-1.4
3,276,477	+		DZA65_RS15005	0.61	-0.1
3,276,478	-		DZA65_RS15005	0.61	-0.4
3,276,539	+		DZA65_RS15005	0.65	-2.3
3,276,539	+		DZA65_RS15005	0.65	-0.7
3,276,539	+		DZA65_RS15005	0.65	-2.0
3,276,539	+		DZA65_RS15005	0.65	-1.2
3,276,539	+		DZA65_RS15005	0.65	+2.7
3,276,576	-		DZA65_RS15005	0.68	-2.5
3,276,596	+		DZA65_RS15005	0.69	-1.1
3,276,596	+		DZA65_RS15005	0.69	-0.4
3,276,597	-		DZA65_RS15005	0.69	-2.3
3,276,657	+		DZA65_RS15005	0.73	-1.5
3,276,657	+		DZA65_RS15005	0.73	+0.0
3,276,657	+				-1.8
3,276,739	+		DZA65_RS15005	0.79	-1.8
3,276,833	+		DZA65_RS15005	0.85	+0.2
3,276,833	+		DZA65_RS15005	0.85	-0.1
3,276,833	+		DZA65_RS15005	0.85	-1.1
3,276,833	+		DZA65_RS15005	0.85	-0.4
3,276,833	+		DZA65_RS15005	0.85	+0.6
3,276,833	+				+1.5
3,276,833	+		DZA65_RS15005	0.85	-1.6
3,276,833	+		DZA65_RS15005	0.85	-0.8
3,276,833	+		DZA65_RS15005	0.85	-2.3
3,276,833	+		DZA65_RS15005	0.85	+3.5
3,276,833	+		DZA65_RS15005	0.85	-0.8
3,276,833	+		DZA65_RS15005	0.85	-0.1
3,276,833	+		DZA65_RS15005	0.85	-1.5
3,276,833	+		DZA65_RS15005	0.85	-2.1
3,276,833	+		DZA65_RS15005	0.85	+0.3
3,276,833	+		DZA65_RS15005	0.85	-0.8
3,276,833	+		DZA65_RS15005	0.85	-1.3
3,276,833	+		DZA65_RS15005	0.85	-0.9
3,276,833	+		DZA65_RS15005	0.85	-2.3
3,276,833	+		DZA65_RS15005	0.85	-1.4
3,276,834	-		DZA65_RS15005	0.85	-0.2
3,276,834	-		DZA65_RS15005	0.85	+0.2
3,276,834	-		DZA65_RS15005	0.85	-1.4
3,276,834	-		DZA65_RS15005	0.85	+1.6
3,276,834	-		DZA65_RS15005	0.85	-0.4
3,276,834	-		DZA65_RS15005	0.85	-0.8
3,276,834	-		DZA65_RS15005	0.85	+0.0
3,276,834	-		DZA65_RS15005	0.85	+0.3
3,276,834	-		DZA65_RS15005	0.85	-2.6
3,276,834	-		DZA65_RS15005	0.85	-0.4
3,276,834	-		DZA65_RS15005	0.85	-0.5
3,276,834	-		DZA65_RS15005	0.85	+0.2
3,276,834	-		DZA65_RS15005	0.85	+0.2
3,276,834	-		DZA65_RS15005	0.85	-0.8
3,276,834	-		DZA65_RS15005	0.85	+1.9
3,276,834	-		DZA65_RS15005	0.85	-0.0
3,276,835	+		DZA65_RS15005	0.85	+0.2
3,276,835	+		DZA65_RS15005	0.85	-0.4
3,276,835	+		DZA65_RS15005	0.85	-1.1
3,276,835	+		DZA65_RS15005	0.85	+2.1
3,276,835	+		DZA65_RS15005	0.85	-2.1
3,276,835	+		DZA65_RS15005	0.85	-1.4
3,276,835	+		DZA65_RS15005	0.85	-2.3
3,276,835	+		DZA65_RS15005	0.85	-0.4
3,276,835	+		DZA65_RS15005	0.85	+1.7
3,276,835	+		DZA65_RS15005	0.85	-0.8
3,276,835	+		DZA65_RS15005	0.85	-2.4
3,276,835	+		DZA65_RS15005	0.85	+1.5
3,276,835	+		DZA65_RS15005	0.85	+0.1
3,276,835	+		DZA65_RS15005	0.85	-2.1
3,276,835	+		DZA65_RS15005	0.85	+1.3
3,276,836	-		DZA65_RS15005	0.85	-1.1
3,276,836	-		DZA65_RS15005	0.85	-0.0
3,276,836	-		DZA65_RS15005	0.85	-0.8
3,276,836	-		DZA65_RS15005	0.85	+1.3
3,276,836	-		DZA65_RS15005	0.85	-0.8
3,276,836	-		DZA65_RS15005	0.85	-0.4
3,276,836	-		DZA65_RS15005	0.85	-0.9
3,276,836	-				-1.1
3,276,836	-		DZA65_RS15005	0.85	+2.8
3,276,836	-		DZA65_RS15005	0.85	+0.6
3,276,836	-		DZA65_RS15005	0.85	+1.5
3,276,836	-		DZA65_RS15005	0.85	-0.4
3,276,836	-		DZA65_RS15005	0.85	-0.4
3,276,935	+				+1.8
3,276,936	-				-1.8
3,277,055	-				-0.4
3,277,076	+				-1.4
3,277,181	-				+3.0
3,277,192	+				-1.1
3,277,192	+				+1.2
3,277,220	+		DZA65_RS15010	0.10	-0.1
3,277,231	+		DZA65_RS15010	0.12	-0.9
3,277,232	-		DZA65_RS15010	0.12	+0.8
3,277,234	-		DZA65_RS15010	0.12	-1.8
3,277,287	+		DZA65_RS15010	0.20	-1.4
3,277,287	+		DZA65_RS15010	0.20	-2.3
3,277,288	-		DZA65_RS15010	0.20	+1.2
3,277,288	-		DZA65_RS15010	0.20	-0.3
3,277,288	-		DZA65_RS15010	0.20	-1.1
3,277,312	+		DZA65_RS15010	0.23	-0.4
3,277,330	+		DZA65_RS15010	0.26	+2.0
3,277,360	-		DZA65_RS15010	0.30	+0.7
3,277,371	+		DZA65_RS15010	0.32	+0.7
3,277,384	+		DZA65_RS15010	0.34	-0.8
3,277,384	+		DZA65_RS15010	0.34	+0.4
3,277,384	+		DZA65_RS15010	0.34	-1.8
3,277,384	+		DZA65_RS15010	0.34	-1.1
3,277,384	+		DZA65_RS15010	0.34	-0.0
3,277,385	-		DZA65_RS15010	0.34	+0.2
3,277,386	+		DZA65_RS15010	0.34	-0.8
3,277,386	+		DZA65_RS15010	0.34	+1.8
3,277,386	+		DZA65_RS15010	0.34	-0.8
3,277,386	+		DZA65_RS15010	0.34	-4.2
3,277,386	+		DZA65_RS15010	0.34	+1.4
3,277,387	-		DZA65_RS15010	0.34	+0.3
3,277,387	-		DZA65_RS15010	0.34	+0.2
3,277,407	+		DZA65_RS15010	0.37	+0.6
3,277,407	+		DZA65_RS15010	0.37	+1.3
3,277,470	+		DZA65_RS15010	0.46	+1.2
3,277,475	+		DZA65_RS15010	0.47	-0.8
3,277,475	+		DZA65_RS15010	0.47	+1.5
3,277,501	+		DZA65_RS15010	0.50	-1.4
3,277,501	+		DZA65_RS15010	0.50	-0.8
3,277,501	+		DZA65_RS15010	0.50	+3.6
3,277,531	+		DZA65_RS15010	0.55	-1.3
3,277,531	+		DZA65_RS15010	0.55	-1.0
3,277,531	+		DZA65_RS15010	0.55	+0.1
3,277,531	+		DZA65_RS15010	0.55	+0.7
3,277,531	+		DZA65_RS15010	0.55	-1.8
3,277,552	+		DZA65_RS15010	0.58	-0.5
3,277,552	+		DZA65_RS15010	0.58	-1.4
3,277,552	+		DZA65_RS15010	0.58	-0.1
3,277,552	+		DZA65_RS15010	0.58	+0.2
3,277,553	-		DZA65_RS15010	0.58	+0.1
3,277,566	+		DZA65_RS15010	0.60	+0.5
3,277,566	+		DZA65_RS15010	0.60	-1.4
3,277,566	+		DZA65_RS15010	0.60	-0.8
3,277,566	+		DZA65_RS15010	0.60	+0.7
3,277,567	-		DZA65_RS15010	0.60	-1.6
3,277,567	-		DZA65_RS15010	0.60	-1.1
3,277,567	-		DZA65_RS15010	0.60	-0.5
3,277,567	-		DZA65_RS15010	0.60	-0.8
3,277,567	-				-1.1
3,277,567	-		DZA65_RS15010	0.60	+0.3
3,277,567	-		DZA65_RS15010	0.60	-1.1
3,277,567	-		DZA65_RS15010	0.60	-1.4
3,277,589	+		DZA65_RS15010	0.63	-0.9
3,277,590	-		DZA65_RS15010	0.63	-0.5
3,277,590	-		DZA65_RS15010	0.63	-2.1
3,277,590	-		DZA65_RS15010	0.63	-0.8
3,277,590	-		DZA65_RS15010	0.63	+2.5
3,277,638	-		DZA65_RS15010	0.70	+0.8
3,277,681	-		DZA65_RS15010	0.76	-0.8
3,277,681	-		DZA65_RS15010	0.76	-1.1
3,277,681	-		DZA65_RS15010	0.76	-0.3
3,277,688	-		DZA65_RS15010	0.77	+1.0
3,277,707	+		DZA65_RS15010	0.80	-1.9
3,277,708	-		DZA65_RS15010	0.80	+2.8
3,277,708	-		DZA65_RS15010	0.80	-1.1
3,277,714	+		DZA65_RS15010	0.81	-2.1
3,277,715	-		DZA65_RS15010	0.81	+1.1
3,277,726	+		DZA65_RS15010	0.82	-0.9
3,277,727	-		DZA65_RS15010	0.82	-0.8
3,277,727	-		DZA65_RS15010	0.82	-0.3
3,277,736	+		DZA65_RS15010	0.84	+1.2
3,277,780	-				-0.8
3,277,801	-				-1.4
3,277,805	+				+0.3
3,277,827	-				-1.1
3,277,856	+				+2.1
3,277,856	+				-0.4
3,277,877	+				-1.4
3,277,878	-				-0.8
3,277,888	+				+1.2
3,277,888	+				-1.4
3,277,888	+				-2.0
3,277,910	+				+0.6
3,277,918	+				+0.8
3,277,918	+				+1.1
3,277,918	+				+3.7
3,277,918	+				+0.5
3,277,918	+				+1.6
3,277,919	-				+0.2
3,277,934	-				+0.0
3,277,934	-				+1.3
3,277,943	+				-2.0
3,277,944	-				+1.8
3,277,944	-				+0.9
3,277,944	-				-2.3
3,277,944	-				+0.6
3,277,961	+				+0.5
3,277,966	+				-1.4
3,278,003	+				+1.8
3,278,003	+				+0.2
3,278,003	+				-2.5
3,278,003	+				+1.2
3,278,003	+				+0.8
3,278,004	-				-1.1
3,278,004	-				-1.4
3,278,004	-				-2.1
3,278,004	-				-2.3
3,278,005	+				-1.0
3,278,006	-				-2.1
3,278,017	+				+4.6
3,278,018	-				+0.6
3,278,020	+				+0.3
3,278,020	+				-1.6
3,278,020	+				+1.0
3,278,020	+				-0.8
3,278,020	+				-1.6
3,278,020	+				-0.4
3,278,020	+				+0.2
3,278,020	+				-1.4
3,278,021	-				-0.4
3,278,021	-				-1.1
3,278,021	-				-1.1
3,278,021	-				+0.4
3,278,021	-				-0.4
3,278,021	-				-0.8
3,278,026	+				-0.8
3,278,027	-				-0.2
3,278,027	-				+0.3
3,278,042	+		DZA65_RS15015	0.13	-0.5
3,278,043	-		DZA65_RS15015	0.13	+0.3
3,278,141	+		DZA65_RS15015	0.33	-2.4
3,278,141	+		DZA65_RS15015	0.33	-1.4
3,278,141	+		DZA65_RS15015	0.33	-1.4
3,278,142	-				-1.4
3,278,142	-		DZA65_RS15015	0.34	-1.1
3,278,142	-		DZA65_RS15015	0.34	-2.0
3,278,259	+		DZA65_RS15015	0.58	-1.7
3,278,259	+		DZA65_RS15015	0.58	+0.4
3,278,259	+		DZA65_RS15015	0.58	+0.6
3,278,260	-		DZA65_RS15015	0.58	+1.0
3,278,260	-		DZA65_RS15015	0.58	+0.1
3,278,260	-		DZA65_RS15015	0.58	-0.7
3,278,282	+		DZA65_RS15015	0.63	+0.2
3,278,282	+		DZA65_RS15015	0.63	-2.8
3,278,282	+		DZA65_RS15015	0.63	+1.8
3,278,283	-		DZA65_RS15015	0.63	-1.6
3,278,339	+		DZA65_RS15015	0.75	+0.2
3,278,340	-		DZA65_RS15015	0.75	-1.6
3,278,340	-		DZA65_RS15015	0.75	-0.4
3,278,340	-		DZA65_RS15015	0.75	+2.2
3,278,340	-		DZA65_RS15015	0.75	-1.4
3,278,361	+		DZA65_RS15015	0.79	+1.5
3,278,361	+		DZA65_RS15015	0.79	-0.4
3,278,361	+		DZA65_RS15015	0.79	+1.2
3,278,362	-		DZA65_RS15015	0.80	+0.2
3,278,362	-		DZA65_RS15015	0.80	+1.3
3,278,362	-		DZA65_RS15015	0.80	+2.6
3,278,362	-		DZA65_RS15015	0.80	-1.6
3,278,362	-		DZA65_RS15015	0.80	+0.6
3,278,371	+		DZA65_RS15015	0.82	+1.9
3,278,371	+		DZA65_RS15015	0.82	-0.2
3,278,372	-		DZA65_RS15015	0.82	+1.3
3,278,372	-		DZA65_RS15015	0.82	-1.1
3,278,372	-		DZA65_RS15015	0.82	-1.4
3,278,372	-		DZA65_RS15015	0.82	-0.1
3,278,374	+		DZA65_RS15015	0.82	-0.3
3,278,375	-		DZA65_RS15015	0.82	+0.7
3,278,375	-		DZA65_RS15015	0.82	-2.1
3,278,375	-		DZA65_RS15015	0.82	-0.8
3,278,375	-		DZA65_RS15015	0.82	-1.8
3,278,375	-		DZA65_RS15015	0.82	+1.4
3,278,377	+		DZA65_RS15015	0.83	-1.1
3,278,377	+		DZA65_RS15015	0.83	+3.2
3,278,377	+		DZA65_RS15015	0.83	-1.9
3,278,377	+		DZA65_RS15015	0.83	-1.1
3,278,378	-		DZA65_RS15015	0.83	-1.4
3,278,378	-		DZA65_RS15015	0.83	-0.4
3,278,410	-		DZA65_RS15015	0.90	-0.4
3,278,410	-		DZA65_RS15015	0.90	-1.9
3,278,458	+				-2.1
3,278,458	+				+5.9
3,278,521	+				-1.9
3,278,521	+				-1.0
3,278,521	+				-1.8
3,278,521	+				-1.8
3,278,521	+				-1.1
3,278,521	+				+0.5
3,278,521	+				-1.3
3,278,521	+				-1.3
3,278,521	+				-1.4
3,278,521	+				-1.2
3,278,521	+				+1.3
3,278,521	+				+2.1
3,278,521	+				-0.4
3,278,521	+				-1.8
3,278,522	-				-1.4
3,278,522	-				+2.2
3,278,522	-				-0.1
3,278,522	-				+1.2
3,278,522	-				-0.1
3,278,522	-				-2.0
3,278,522	-				+0.3
3,278,522	-				-2.4
3,278,522	-				+2.8
3,278,522	-				-0.4
3,278,522	-				-1.4
3,278,522	-				-0.6
3,278,522	-				-1.4
3,278,522	-				+2.8
3,278,526	-				-1.0
3,278,561	+				+2.0
3,278,562	-				-0.4
3,278,563	+				-2.1
3,278,564	-				-0.5
3,278,569	+				+0.2
3,278,570	-				-1.0
3,278,570	-				-0.8
3,278,570	-				-1.0
3,278,570	-				-1.1
3,278,571	+				-1.3
3,278,591	+		DZA65_RS15020	0.11	-1.8
3,278,592	-		DZA65_RS15020	0.11	-1.4
3,278,612	+		DZA65_RS15020	0.13	-1.4
3,278,613	-		DZA65_RS15020	0.13	-0.6
3,278,613	-		DZA65_RS15020	0.13	-1.8
3,278,712	+		DZA65_RS15020	0.22	-2.0
3,278,712	+		DZA65_RS15020	0.22	+0.2
3,278,712	+		DZA65_RS15020	0.22	-1.8
3,278,712	+		DZA65_RS15020	0.22	-0.6
3,278,712	+		DZA65_RS15020	0.22	-2.0
3,278,712	+		DZA65_RS15020	0.22	-0.8
3,278,712	+		DZA65_RS15020	0.22	-1.8
3,278,712	+		DZA65_RS15020	0.22	-3.4
3,278,713	-		DZA65_RS15020	0.22	+0.6
3,278,713	-		DZA65_RS15020	0.22	-3.6
3,278,713	-		DZA65_RS15020	0.22	-2.0
3,278,714	+		DZA65_RS15020	0.22	+2.3
3,278,714	+		DZA65_RS15020	0.22	+0.9
3,278,714	+		DZA65_RS15020	0.22	-1.4
3,278,714	+		DZA65_RS15020	0.22	-3.4
3,278,714	+		DZA65_RS15020	0.22	+0.3
3,278,714	+		DZA65_RS15020	0.22	-1.6
3,278,714	+		DZA65_RS15020	0.22	+0.2
3,278,715	-		DZA65_RS15020	0.22	-0.4
3,278,715	-		DZA65_RS15020	0.22	-1.1
3,278,715	-		DZA65_RS15020	0.22	-0.8
3,278,715	-		DZA65_RS15020	0.22	-2.0
3,278,715	-		DZA65_RS15020	0.22	-1.8
3,278,715	-		DZA65_RS15020	0.22	+1.2
3,278,716	+		DZA65_RS15020	0.22	-0.2
3,278,717	-		DZA65_RS15020	0.23	+1.6
3,278,717	-		DZA65_RS15020	0.23	-1.4
3,278,752	-		DZA65_RS15020	0.26	+0.5
3,278,753	+		DZA65_RS15020	0.26	-0.7
3,278,753	+		DZA65_RS15020	0.26	+1.6
3,278,753	+		DZA65_RS15020	0.26	-1.6
3,278,753	+		DZA65_RS15020	0.26	+2.0
3,278,753	+		DZA65_RS15020	0.26	+0.2
3,278,753	+		DZA65_RS15020	0.26	-0.6
3,278,753	+		DZA65_RS15020	0.26	-1.4
3,278,753	+		DZA65_RS15020	0.26	+1.2
3,278,754	-		DZA65_RS15020	0.26	-1.1
3,278,754	-		DZA65_RS15020	0.26	-2.4
3,278,754	-		DZA65_RS15020	0.26	-1.8
3,278,754	-		DZA65_RS15020	0.26	-2.1
3,278,757	+		DZA65_RS15020	0.26	+0.7
3,278,757	+		DZA65_RS15020	0.26	-2.1
3,278,757	+		DZA65_RS15020	0.26	-0.4
3,278,758	-		DZA65_RS15020	0.26	+0.9
3,278,758	-		DZA65_RS15020	0.26	+1.9
3,278,758	-		DZA65_RS15020	0.26	+3.1
3,278,758	-		DZA65_RS15020	0.26	+1.9
3,278,758	-		DZA65_RS15020	0.26	-1.6
3,278,758	-		DZA65_RS15020	0.26	-0.4
3,278,758	-		DZA65_RS15020	0.26	+0.2
3,278,802	+		DZA65_RS15020	0.30	-2.4
3,278,831	+		DZA65_RS15020	0.33	-1.1
3,278,832	-		DZA65_RS15020	0.33	-0.8