Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13820

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,966,588	-		DZA65_RS13815	0.44	+0.6
2,966,664	+		DZA65_RS13815	0.50	+2.9
2,966,687	-		DZA65_RS13815	0.52	-0.2
2,966,733	+		DZA65_RS13815	0.56	-0.4
2,966,956	-		DZA65_RS13815	0.76	-0.8
2,966,956	-		DZA65_RS13815	0.76	+1.5
2,967,180	+				-1.0
2,967,180	+				-1.2
2,967,180	+				-1.2
2,967,181	-				-1.2
2,967,220	+				-1.8
2,967,220	+				-0.8
2,967,220	+				-0.4
2,967,220	+				+0.8
2,967,234	+				-0.8
2,967,234	+				+1.2
2,967,234	+				-1.8
2,967,235	-				-1.6
2,967,284	+				-2.4
2,967,284	+				+1.8
2,967,285	-				-1.8
2,967,285	-				-2.6
2,967,297	+				+0.6
2,967,297	+				-1.4
2,967,297	+				+2.6
2,967,297	+				-0.7
2,967,298	-				-0.4
2,967,298	-				+1.3
2,967,352	+				+0.2
2,967,353	-				+0.3
2,967,369	+		DZA65_RS13820	0.12	-0.0
2,967,429	+				-0.4
2,967,429	+		DZA65_RS13820	0.19	-2.2
2,967,430	-		DZA65_RS13820	0.19	+0.8
2,967,432	+		DZA65_RS13820	0.20	-0.0
2,967,558	+		DZA65_RS13820	0.36	+1.5
2,967,558	+		DZA65_RS13820	0.36	+1.0
2,967,558	+		DZA65_RS13820	0.36	-1.2
2,967,559	-		DZA65_RS13820	0.36	-1.4
2,967,559	-		DZA65_RS13820	0.36	-0.9
2,967,559	-		DZA65_RS13820	0.36	+2.0
2,967,560	+		DZA65_RS13820	0.36	-2.6
2,967,560	+		DZA65_RS13820	0.36	-1.4
2,967,560	+		DZA65_RS13820	0.36	+1.2
2,967,560	+		DZA65_RS13820	0.36	-0.4
2,967,561	-		DZA65_RS13820	0.36	-0.5
2,967,561	-		DZA65_RS13820	0.36	-1.4
2,967,561	-		DZA65_RS13820	0.36	+4.5
2,967,561	-		DZA65_RS13820	0.36	-1.4
2,967,561	-		DZA65_RS13820	0.36	+0.2
2,967,561	-		DZA65_RS13820	0.36	+2.0
2,967,561	-		DZA65_RS13820	0.36	-0.4
2,967,650	+		DZA65_RS13820	0.47	-1.0
2,967,650	+		DZA65_RS13820	0.47	-0.8
2,967,650	+				-0.8
2,967,650	+				+0.8
2,967,650	+		DZA65_RS13820	0.47	-0.8
2,967,651	-		DZA65_RS13820	0.47	+0.5
2,967,651	-		DZA65_RS13820	0.47	+0.8
2,967,651	-		DZA65_RS13820	0.47	+0.4
2,967,651	-		DZA65_RS13820	0.47	-1.4
2,967,651	-		DZA65_RS13820	0.47	-1.2
2,967,651	-		DZA65_RS13820	0.47	-1.2
2,967,744	+		DZA65_RS13820	0.59	-2.2
2,967,744	+		DZA65_RS13820	0.59	+1.2
2,967,744	+		DZA65_RS13820	0.59	-1.2
2,967,744	+		DZA65_RS13820	0.59	-1.4
2,967,744	+		DZA65_RS13820	0.59	+0.9
2,967,744	+		DZA65_RS13820	0.59	-2.3
2,967,745	-		DZA65_RS13820	0.59	-0.6
2,967,745	-		DZA65_RS13820	0.59	-2.5
2,967,747	+		DZA65_RS13820	0.60	+2.0
2,967,747	+		DZA65_RS13820	0.60	+0.5
2,967,747	+		DZA65_RS13820	0.60	-2.3
2,967,747	+		DZA65_RS13820	0.60	-2.0
2,967,747	+		DZA65_RS13820	0.60	-1.3
2,967,748	-		DZA65_RS13820	0.60	+0.8
2,967,763	-		DZA65_RS13820	0.62	-0.4
2,967,846	+		DZA65_RS13820	0.72	+2.7
2,967,853	+		DZA65_RS13820	0.73	-0.4
2,967,853	+		DZA65_RS13820	0.73	-1.4
2,967,866	+		DZA65_RS13820	0.75	+0.2
2,967,866	+		DZA65_RS13820	0.75	+0.2
2,967,866	+		DZA65_RS13820	0.75	+1.2
2,967,866	+		DZA65_RS13820	0.75	-0.6
2,967,866	+		DZA65_RS13820	0.75	+1.3
2,967,866	+		DZA65_RS13820	0.75	-1.8
2,967,866	+		DZA65_RS13820	0.75	-0.2
2,967,866	+		DZA65_RS13820	0.75	+2.2
2,967,866	+		DZA65_RS13820	0.75	-0.4
2,967,866	+		DZA65_RS13820	0.75	-1.5
2,967,867	-		DZA65_RS13820	0.75	+2.2
2,967,867	-		DZA65_RS13820	0.75	-1.4
2,967,867	-		DZA65_RS13820	0.75	+0.6
2,967,867	-		DZA65_RS13820	0.75	+3.0
2,967,867	-		DZA65_RS13820	0.75	-0.8
2,967,867	-		DZA65_RS13820	0.75	-0.4
2,967,928	-		DZA65_RS13820	0.83	-1.8
2,967,933	+		DZA65_RS13820	0.83	+2.8
2,967,933	+		DZA65_RS13820	0.83	+2.2
2,968,066	-				+1.7
2,968,066	-				+2.6
2,968,076	+				+1.9
2,968,076	+				-0.4
2,968,076	+				+1.0
2,968,077	-				-0.4
2,968,097	+				+0.9
2,968,098	-				-0.4
2,968,098	-				-1.3
2,968,147	+				-0.9
2,968,148	-				-1.2
2,968,148	-				-0.8
2,968,150	+				-1.2
2,968,150	+				-0.2
2,968,150	+				+1.0
2,968,150	+				-0.4
2,968,151	-				-1.3
2,968,151	-				-0.5
2,968,151	-				-0.8
2,968,207	+				+2.2
2,968,302	+				+0.8
2,968,303	-				-0.6
2,968,339	+				-2.1
2,968,343	+				+0.2
2,968,343	+				+0.6
2,968,344	-				+2.4
2,968,344	-				-0.4
2,968,362	+				-1.5
2,968,363	-				-0.3
2,968,384	+				-0.2
2,968,384	+				-1.3
2,968,385	-				-0.8
2,968,385	-				+2.6
2,968,385	-				-0.8
2,968,385	-				-0.9
2,968,385	-				+0.7
2,968,385	-				-3.1
2,968,415	+				+0.2
2,968,416	-				-1.0
2,968,416	-				+0.6
2,968,427	+				+3.6
2,968,428	-				-1.4
2,968,428	-				-0.8
2,968,489	+				+0.2
2,968,490	-				-1.8
2,968,503	+				+1.9
2,968,503	+				-0.4
2,968,503	+				+1.2
2,968,503	+				-0.2
2,968,503	+				-1.4
2,968,506	-				-2.0
2,968,506	-				-1.2
2,968,528	-				-1.4
2,968,548	+				-0.4
2,968,548	+				-0.1
2,968,548	+				-0.2
2,968,549	-				+0.8
2,968,554	+				+0.6
2,968,554	+				-0.8
2,968,555	-				+0.3
2,968,602	+				-1.0
2,968,602	+				+2.7
2,968,602	+				+0.7
2,968,602	+				-2.2
2,968,603	-				+0.2
2,968,603	-				-0.1
2,968,624	-				+0.2
2,968,633	-				-0.8
2,968,633	-				+0.1
2,968,633	-				+2.8
2,968,633	-				-0.9
2,968,653	+		DZA65_RS13830	0.11	-1.4
2,968,657	+		DZA65_RS13830	0.12	-1.1
2,968,657	+		DZA65_RS13830	0.12	+1.2
2,968,657	+		DZA65_RS13830	0.12	+5.3
2,968,657	+		DZA65_RS13830	0.12	-1.5
2,968,657	+		DZA65_RS13830	0.12	-0.4
2,968,657	+		DZA65_RS13830	0.12	-1.8
2,968,658	-		DZA65_RS13830	0.12	+5.8
2,968,658	-		DZA65_RS13830	0.12	+2.0
2,968,658	-		DZA65_RS13830	0.12	+0.6
2,968,658	-		DZA65_RS13830	0.12	-2.0
2,968,658	-		DZA65_RS13830	0.12	+3.2
2,968,658	-		DZA65_RS13830	0.12	-1.2
2,968,658	-		DZA65_RS13830	0.12	+1.2
2,968,658	-		DZA65_RS13830	0.12	+3.2
2,968,658	-		DZA65_RS13830	0.12	+0.7
2,968,783	-		DZA65_RS13830	0.36	+2.3
2,968,783	-		DZA65_RS13830	0.36	-0.4
2,968,783	-		DZA65_RS13830	0.36	-0.8
2,968,783	-		DZA65_RS13830	0.36	-1.4
2,968,783	-		DZA65_RS13830	0.36	-0.8
2,968,783	-		DZA65_RS13830	0.36	-0.6
2,968,783	-		DZA65_RS13830	0.36	+2.3
2,968,858	+		DZA65_RS13830	0.51	+2.5
2,968,868	-		DZA65_RS13830	0.53	+1.2
2,968,868	-		DZA65_RS13830	0.53	+3.5
2,968,899	-		DZA65_RS13830	0.59	-0.8
2,968,933	+		DZA65_RS13830	0.65	-0.4
2,968,933	+		DZA65_RS13830	0.65	-1.8
2,968,934	-		DZA65_RS13830	0.65	+1.8
2,968,934	-		DZA65_RS13830	0.65	+0.5
2,968,976	-		DZA65_RS13830	0.74	-0.4
2,968,976	-		DZA65_RS13830	0.74	+0.2
2,968,976	-		DZA65_RS13830	0.74	-1.4
2,968,976	-		DZA65_RS13830	0.74	+0.8
2,968,976	-		DZA65_RS13830	0.74	+0.4