Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12425

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,655,089	-		DZA65_RS12415	0.90	-0.5
2,655,089	-		DZA65_RS12415	0.90	-0.9
2,655,200	+				-0.3
2,655,204	+				+0.1
2,655,205	-				-1.8
2,655,257	-				+0.1
2,655,274	+				-2.5
2,655,293	-				-0.8
2,655,293	-				-0.5
2,655,311	-				-0.3
2,655,323	+				-0.1
2,655,324	-				+1.1
2,655,349	+				+2.8
2,655,350	-				+1.5
2,655,350	-				+0.7
2,655,350	-				-0.5
2,655,350	-				+1.8
2,655,350	-				-2.3
2,655,350	-				-0.4
2,655,351	+				-1.9
2,655,351	+				-1.3
2,655,351	+				-1.3
2,655,351	+				+1.1
2,655,351	+				+0.9
2,655,351	+				-0.9
2,655,351	+				+1.1
2,655,351	+				+0.7
2,655,351	+				-0.3
2,655,351	+				+0.2
2,655,351	+				-0.8
2,655,352	-				+0.1
2,655,352	-				+3.4
2,655,352	-				+1.4
2,655,352	-				-0.6
2,655,352	-				+0.2
2,655,352	-				+1.6
2,655,352	-				-1.4
2,655,352	-				-1.8
2,655,400	-				+0.6
2,655,403	-				-0.9
2,655,428	+				-1.5
2,655,429	-				+0.2
2,655,454	+				-2.8
2,655,454	+				-0.5
2,655,495	-		DZA65_RS12420	0.27	-1.3
2,655,495	-		DZA65_RS12420	0.27	-1.9
2,655,527	-		DZA65_RS12420	0.41	-2.4
2,655,654	+				-1.1
2,655,654	+				+1.5
2,655,654	+				+0.1
2,655,654	+				-1.8
2,655,654	+				-0.9
2,655,654	+				+1.6
2,655,654	+				+0.1
2,655,654	+				-0.5
2,655,654	+				+0.1
2,655,654	+				+1.1
2,655,654	+				-0.4
2,655,654	+				-2.1
2,655,655	-				-0.5
2,655,655	-				-0.4
2,655,655	-				+0.1
2,655,655	-				-2.1
2,655,655	-				-1.3
2,655,655	-				+2.6
2,655,655	-				-0.9
2,655,655	-				-0.8
2,655,655	-				-0.0
2,655,661	+				+1.4
2,655,661	+				+3.3
2,655,661	+				+2.1
2,655,661	+				-2.5
2,655,661	+				-0.9
2,655,662	-				-0.9
2,655,662	-				-0.5
2,655,708	+				+0.1
2,655,779	+				+0.5
2,655,780	-				-0.9
2,655,819	+				+3.6
2,655,875	+				+1.6
2,655,876	-				-0.1
2,655,876	-				+4.9
2,655,881	+				+0.3
2,655,882	-				+0.1
2,655,882	-				+2.3
2,655,882	-				-0.9
2,655,897	+				-0.9
2,655,898	-				-1.3
2,655,898	-				-0.9
2,655,898	-				-0.6
2,655,898	-				+1.2
2,655,898	-				-0.4
2,655,921	-				-2.4
2,655,921	-				-1.3
2,655,969	-				-0.1
2,656,098	-				+0.5
2,656,122	+				-0.4
2,656,169	-		DZA65_RS12425	0.10	+3.8
2,656,246	-		DZA65_RS12425	0.18	+1.1
2,656,423	-		DZA65_RS12425	0.36	-3.1
2,656,434	+		DZA65_RS12425	0.37	+0.5
2,656,447	+		DZA65_RS12425	0.38	-1.4
2,656,448	-		DZA65_RS12425	0.39	+0.8
2,656,523	-		DZA65_RS12425	0.46	-1.5
2,656,527	-		DZA65_RS12425	0.47	-0.5
2,656,582	+		DZA65_RS12425	0.52	-0.3
2,656,582	+		DZA65_RS12425	0.52	-2.6
2,656,583	-		DZA65_RS12425	0.52	-0.1
2,656,611	+		DZA65_RS12425	0.55	-1.8
2,656,612	-		DZA65_RS12425	0.55	+2.1
2,656,612	-		DZA65_RS12425	0.55	-0.5
2,656,654	-		DZA65_RS12425	0.60	-2.1
2,656,664	+		DZA65_RS12425	0.61	-1.8
2,656,664	+		DZA65_RS12425	0.61	+0.1
2,656,665	-		DZA65_RS12425	0.61	-1.3
2,656,706	-		DZA65_RS12425	0.65	-1.8
2,656,717	-		DZA65_RS12425	0.66	+1.4
2,656,721	+		DZA65_RS12425	0.66	+1.5
2,656,772	-		DZA65_RS12425	0.72	+0.8
2,656,782	+		DZA65_RS12425	0.73	-0.3
2,656,881	+		DZA65_RS12425	0.83	+2.9
2,656,881	+		DZA65_RS12425	0.83	-0.3
2,656,884	+		DZA65_RS12425	0.83	-0.5
2,656,885	-		DZA65_RS12425	0.83	-1.5
2,657,046	+				-1.3
2,657,046	+				-1.4
2,657,047	-				+0.2
2,657,060	+				-1.8
2,657,061	-				+2.3
2,657,068	+				-1.9
2,657,068	+				+1.8
2,657,072	+				-1.6
2,657,072	+				-0.5
2,657,073	-				-1.5
2,657,073	-				+0.1
2,657,220	+		DZA65_RS12430	0.14	-0.2
2,657,220	+		DZA65_RS12430	0.14	-2.6
2,657,240	+		DZA65_RS12430	0.16	+0.7
2,657,240	+		DZA65_RS12430	0.16	+1.3
2,657,240	+		DZA65_RS12430	0.16	+1.1
2,657,241	-		DZA65_RS12430	0.16	+1.7
2,657,244	-		DZA65_RS12430	0.16	+0.8
2,657,244	-		DZA65_RS12430	0.16	-1.3
2,657,246	+		DZA65_RS12430	0.16	-0.4
2,657,247	-		DZA65_RS12430	0.17	-1.1
2,657,355	+		DZA65_RS12430	0.27	+1.2
2,657,468	-		DZA65_RS12430	0.38	-0.8
2,657,493	-		DZA65_RS12430	0.40	+0.5
2,657,499	+		DZA65_RS12430	0.41	+0.6
2,657,499	+		DZA65_RS12430	0.41	-1.3
2,657,499	+		DZA65_RS12430	0.41	-0.5
2,657,511	+		DZA65_RS12430	0.42	-0.2
2,657,512	-		DZA65_RS12430	0.42	-2.3
2,657,514	-		DZA65_RS12430	0.42	+1.1
2,657,514	-		DZA65_RS12430	0.42	+1.1
2,657,514	-		DZA65_RS12430	0.42	-1.3
2,657,575	+		DZA65_RS12430	0.48	+1.3
2,657,594	+		DZA65_RS12430	0.50	+0.5
2,657,594	+		DZA65_RS12430	0.50	+1.0
2,657,595	-		DZA65_RS12430	0.50	-0.5
2,657,595	-		DZA65_RS12430	0.50	+2.5
2,657,621	+		DZA65_RS12430	0.53	+2.2
2,657,621	+		DZA65_RS12430	0.53	-0.9
2,657,621	+		DZA65_RS12430	0.53	+1.1
2,657,622	-		DZA65_RS12430	0.53	+1.1
2,657,666	-		DZA65_RS12430	0.57	-0.5
2,657,666	-				+1.1
2,657,704	+		DZA65_RS12430	0.61	+1.8
2,657,704	+				-0.5
2,657,704	+		DZA65_RS12430	0.61	+1.1
2,657,704	+		DZA65_RS12430	0.61	-1.5
2,657,704	+		DZA65_RS12430	0.61	-0.9
2,657,704	+		DZA65_RS12430	0.61	+1.2
2,657,705	-		DZA65_RS12430	0.61	+0.1
2,657,705	-		DZA65_RS12430	0.61	-1.3
2,657,705	-		DZA65_RS12430	0.61	-0.1
2,657,705	-		DZA65_RS12430	0.61	-2.1
2,657,705	-		DZA65_RS12430	0.61	-0.9
2,657,708	+		DZA65_RS12430	0.61	-1.9
2,657,708	+		DZA65_RS12430	0.61	+0.7
2,657,708	+		DZA65_RS12430	0.61	-1.1
2,657,708	+		DZA65_RS12430	0.61	+2.1
2,657,708	+		DZA65_RS12430	0.61	+0.1
2,657,708	+		DZA65_RS12430	0.61	+0.1
2,657,708	+		DZA65_RS12430	0.61	-2.8
2,657,708	+		DZA65_RS12430	0.61	+0.1
2,657,708	+		DZA65_RS12430	0.61	-1.5
2,657,709	-		DZA65_RS12430	0.61	+0.1
2,657,709	-		DZA65_RS12430	0.61	+0.5
2,657,709	-		DZA65_RS12430	0.61	-1.8
2,657,715	+		DZA65_RS12430	0.62	-1.3
2,657,778	+		DZA65_RS12430	0.68	-1.3
2,657,779	-		DZA65_RS12430	0.68	+0.1
2,657,779	-		DZA65_RS12430	0.68	+2.3
2,657,779	-		DZA65_RS12430	0.68	+0.7
2,657,840	+		DZA65_RS12430	0.74	-1.8
2,657,921	+		DZA65_RS12430	0.82	-1.5
2,657,922	-		DZA65_RS12430	0.82	-1.3
2,657,952	-		DZA65_RS12430	0.85	-1.3
2,657,952	-		DZA65_RS12430	0.85	-2.6
2,657,994	+		DZA65_RS12430	0.89	+3.1
2,657,994	+		DZA65_RS12430	0.89	+0.3
2,658,026	-				-0.7
2,658,026	-				-1.5