Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11550

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,467,932	-		DZA65_RS11545	0.48	-1.9
2,468,009	+		DZA65_RS11545	0.53	-0.1
2,468,010	-		DZA65_RS11545	0.53	-1.8
2,468,010	-		DZA65_RS11545	0.53	-1.7
2,468,069	+		DZA65_RS11545	0.57	-1.5
2,468,090	+		DZA65_RS11545	0.58	-0.5
2,468,119	+		DZA65_RS11545	0.60	+1.2
2,468,120	-		DZA65_RS11545	0.60	+1.1
2,468,120	-		DZA65_RS11545	0.60	+0.1
2,468,120	-		DZA65_RS11545	0.60	+0.3
2,468,156	+		DZA65_RS11545	0.62	-1.3
2,468,156	+		DZA65_RS11545	0.62	+1.9
2,468,181	-		DZA65_RS11545	0.64	+0.1
2,468,181	-		DZA65_RS11545	0.64	+1.1
2,468,181	-		DZA65_RS11545	0.64	-0.1
2,468,181	-		DZA65_RS11545	0.64	-1.3
2,468,183	+		DZA65_RS11545	0.64	+1.4
2,468,183	+		DZA65_RS11545	0.64	-0.8
2,468,183	+		DZA65_RS11545	0.64	-0.5
2,468,183	+		DZA65_RS11545	0.64	-1.1
2,468,183	+		DZA65_RS11545	0.64	-0.5
2,468,183	+				+0.6
2,468,183	+		DZA65_RS11545	0.64	-1.7
2,468,184	-		DZA65_RS11545	0.64	+0.5
2,468,184	-		DZA65_RS11545	0.64	+2.4
2,468,184	-		DZA65_RS11545	0.64	-0.6
2,468,184	-		DZA65_RS11545	0.64	-0.7
2,468,184	-		DZA65_RS11545	0.64	+0.3
2,468,184	-		DZA65_RS11545	0.64	-0.5
2,468,184	-		DZA65_RS11545	0.64	-0.5
2,468,184	-		DZA65_RS11545	0.64	-2.9
2,468,184	-		DZA65_RS11545	0.64	-2.7
2,468,184	-		DZA65_RS11545	0.64	-1.5
2,468,184	-		DZA65_RS11545	0.64	+0.4
2,468,184	-		DZA65_RS11545	0.64	-1.3
2,468,184	-		DZA65_RS11545	0.64	+1.5
2,468,184	-				+0.7
2,468,185	+		DZA65_RS11545	0.64	-2.8
2,468,185	+		DZA65_RS11545	0.64	+0.1
2,468,239	+		DZA65_RS11545	0.68	-0.8
2,468,239	+		DZA65_RS11545	0.68	-1.3
2,468,240	-		DZA65_RS11545	0.68	-2.3
2,468,240	-		DZA65_RS11545	0.68	+0.8
2,468,398	+		DZA65_RS11545	0.78	+0.1
2,468,398	+		DZA65_RS11545	0.78	-0.8
2,468,422	+		DZA65_RS11545	0.80	-1.9
2,468,422	+		DZA65_RS11545	0.80	-0.9
2,468,423	-		DZA65_RS11545	0.80	+0.6
2,468,423	-		DZA65_RS11545	0.80	+1.1
2,468,423	-		DZA65_RS11545	0.80	-1.3
2,468,423	-		DZA65_RS11545	0.80	-0.2
2,468,423	-		DZA65_RS11545	0.80	-0.1
2,468,423	-		DZA65_RS11545	0.80	+0.7
2,468,426	+		DZA65_RS11545	0.80	-1.8
2,468,426	+		DZA65_RS11545	0.80	-0.2
2,468,427	-		DZA65_RS11545	0.80	-0.9
2,468,427	-		DZA65_RS11545	0.80	-2.5
2,468,463	-		DZA65_RS11545	0.82	+2.1
2,468,521	+		DZA65_RS11545	0.86	-0.3
2,468,544	+		DZA65_RS11545	0.88	+1.1
2,468,573	+		DZA65_RS11545	0.90	+0.1
2,468,573	+		DZA65_RS11545	0.90	-0.5
2,468,573	+		DZA65_RS11545	0.90	-0.9
2,468,573	+		DZA65_RS11545	0.90	+0.2
2,468,573	+		DZA65_RS11545	0.90	-0.8
2,468,573	+		DZA65_RS11545	0.90	-0.5
2,468,574	-		DZA65_RS11545	0.90	-0.0
2,468,574	-		DZA65_RS11545	0.90	-0.5
2,468,574	-		DZA65_RS11545	0.90	+4.2
2,468,574	-		DZA65_RS11545	0.90	-0.9
2,468,574	-		DZA65_RS11545	0.90	-2.1
2,468,727	+				-2.4
2,468,727	+				-1.8
2,468,727	+				+2.5
2,468,728	-				+0.9
2,468,729	+				-1.3
2,468,729	+				+0.9
2,468,729	+				+0.1
2,468,730	-				-1.3
2,468,730	-				+0.1
2,468,747	+				+2.4
2,468,748	-				-0.2
2,468,748	-				+0.7
2,468,748	-				+2.1
2,468,769	-				-0.5
2,468,769	-				-0.9
2,468,771	+				+3.2
2,468,772	-				-1.5
2,468,809	-				+2.4
2,468,843	+				+1.2
2,468,844	-				-0.5
2,468,844	-				-0.9
2,468,948	+		DZA65_RS11550	0.15	+1.1
2,468,985	-		DZA65_RS11550	0.20	-0.9
2,469,027	-				+1.5
2,469,027	-		DZA65_RS11550	0.26	-0.5
2,469,027	-		DZA65_RS11550	0.26	-0.5
2,469,030	-		DZA65_RS11550	0.26	+1.6
2,469,047	+		DZA65_RS11550	0.28	-2.1
2,469,047	+		DZA65_RS11550	0.28	+0.5
2,469,047	+		DZA65_RS11550	0.28	-0.9
2,469,048	-		DZA65_RS11550	0.29	-1.8
2,469,048	-		DZA65_RS11550	0.29	-1.3
2,469,159	+		DZA65_RS11550	0.44	-1.9
2,469,240	+		DZA65_RS11550	0.55	-0.9
2,469,319	-		DZA65_RS11550	0.66	-1.8
2,469,513	+				+1.1
2,469,513	+				-1.3
2,469,556	-				-1.3
2,469,586	+				+0.3
2,469,590	-				+1.1
2,469,611	-				-1.1
2,469,624	+				+0.3
2,469,624	+				+0.1
2,469,624	+				-0.5
2,469,625	-				+0.3
2,469,633	+				+0.2
2,469,634	-				-2.3
2,469,634	-				-2.3
2,469,634	-				-0.2
2,469,634	-				+1.1
2,469,638	+				-1.3
2,469,639	-				+4.8
2,469,639	-				-1.5
2,469,666	-				+1.1
2,469,680	+				-1.2
2,469,680	+				-0.7
2,469,710	+				+0.1
2,469,710	+				+0.3
2,469,755	+				+1.1
2,469,760	+				-2.2
2,469,760	+				-1.5
2,469,761	-				-0.7
2,469,765	+				-0.5
2,469,766	-				+0.1
2,469,854	-		DZA65_RS11555	0.33	-1.8
2,469,869	+		DZA65_RS11555	0.41	+0.6
2,469,870	-		DZA65_RS11555	0.42	+0.1
2,469,872	+		DZA65_RS11555	0.43	-1.9
2,469,879	-		DZA65_RS11555	0.47	+2.4
2,469,942	-		DZA65_RS11555	0.82	-1.5
2,469,942	-		DZA65_RS11555	0.82	-0.3
2,469,970	+				-0.8
2,469,970	+				+0.7
2,469,970	+				-0.5
2,469,970	+				-1.1
2,469,971	-				+0.6
2,469,971	-				-0.8
2,469,971	-				+3.4
2,470,042	+		DZA65_RS11560	0.32	+0.1
2,470,042	+		DZA65_RS11560	0.32	+2.9
2,470,042	+		DZA65_RS11560	0.32	+1.3
2,470,043	-		DZA65_RS11560	0.33	+2.6
2,470,043	-		DZA65_RS11560	0.33	+1.8
2,470,043	-		DZA65_RS11560	0.33	-2.1
2,470,043	-		DZA65_RS11560	0.33	+0.6
2,470,043	-		DZA65_RS11560	0.33	+1.8
2,470,061	+		DZA65_RS11560	0.44	-0.3
2,470,062	-		DZA65_RS11560	0.45	-0.3
2,470,062	-		DZA65_RS11560	0.45	+0.5
2,470,064	+		DZA65_RS11560	0.46	+2.3
2,470,106	+		DZA65_RS11560	0.74	-1.9
2,470,106	+		DZA65_RS11560	0.74	+1.4
2,470,106	+		DZA65_RS11560	0.74	+0.7
2,470,106	+		DZA65_RS11560	0.74	+1.1
2,470,106	+		DZA65_RS11560	0.74	+0.4
2,470,106	+		DZA65_RS11560	0.74	-1.5
2,470,107	-		DZA65_RS11560	0.75	+0.1
2,470,107	-		DZA65_RS11560	0.75	+2.1
2,470,107	-		DZA65_RS11560	0.75	-2.0
2,470,107	-		DZA65_RS11560	0.75	-2.4
2,470,112	+				+0.1
2,470,112	+		DZA65_RS11560	0.78	+0.1
2,470,113	-		DZA65_RS11560	0.78	-0.5
2,470,114	+		DZA65_RS11560	0.79	+3.7
2,470,114	+		DZA65_RS11560	0.79	-2.8
2,470,114	+		DZA65_RS11560	0.79	-1.5
2,470,114	+		DZA65_RS11560	0.79	-0.9
2,470,115	-		DZA65_RS11560	0.80	-0.9
2,470,147	+				-2.8
2,470,148	-				+0.7
2,470,168	+				+2.6
2,470,169	-				+2.1
2,470,177	+				+1.1
2,470,177	+				-1.5
2,470,178	-				-0.9
2,470,179	+				+0.9
2,470,179	+				+2.1
2,470,180	-				-0.6
2,470,180	-				-1.5
2,470,182	+				-0.5
2,470,182	+				+0.1
2,470,183	-				-1.1
2,470,220	+				-1.3
2,470,245	-				-1.1
2,470,245	-				+1.5
2,470,275	-				-2.1
2,470,373	+				-3.5
2,470,385	+				-1.5
2,470,385	+				+3.2
2,470,386	-				-1.5
2,470,388	+				+2.2
2,470,388	+				-0.3
2,470,389	-				-1.0
2,470,397	+				-2.8
2,470,397	+				-0.5
2,470,398	-				+0.1
2,470,407	+				+0.4
2,470,408	-				-0.5
2,470,408	-				+1.1
2,470,519	-		DZA65_RS11565	0.20	-0.8
2,470,549	+		DZA65_RS11565	0.25	-0.5
2,470,549	+		DZA65_RS11565	0.25	-1.6
2,470,550	-		DZA65_RS11565	0.26	-1.5