Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09720

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,049,980	-		DZA65_RS09715	0.28	-1.8
2,049,988	+		DZA65_RS09715	0.28	+1.7
2,049,988	+		DZA65_RS09715	0.28	+0.0
2,049,988	+		DZA65_RS09715	0.28	-0.6
2,049,989	-		DZA65_RS09715	0.28	+1.8
2,049,989	-		DZA65_RS09715	0.28	+2.3
2,050,054	-		DZA65_RS09715	0.34	+1.0
2,050,054	-		DZA65_RS09715	0.34	+0.0
2,050,214	+		DZA65_RS09715	0.48	-1.3
2,050,214	+		DZA65_RS09715	0.48	-1.6
2,050,214	+		DZA65_RS09715	0.48	-0.2
2,050,215	-		DZA65_RS09715	0.48	-2.0
2,050,215	-		DZA65_RS09715	0.48	-1.6
2,050,215	-		DZA65_RS09715	0.48	+0.3
2,050,222	-		DZA65_RS09715	0.49	-2.2
2,050,320	+		DZA65_RS09715	0.58	+1.4
2,050,320	+		DZA65_RS09715	0.58	-2.3
2,050,320	+		DZA65_RS09715	0.58	-0.3
2,050,359	+		DZA65_RS09715	0.61	-0.9
2,050,359	+		DZA65_RS09715	0.61	-1.0
2,050,404	+		DZA65_RS09715	0.65	-1.3
2,050,405	-		DZA65_RS09715	0.65	-1.9
2,050,447	+		DZA65_RS09715	0.69	+0.0
2,050,448	-		DZA65_RS09715	0.69	+1.5
2,050,522	+		DZA65_RS09715	0.76	+0.2
2,050,523	-		DZA65_RS09715	0.76	-1.3
2,050,525	+		DZA65_RS09715	0.76	-1.0
2,050,525	+		DZA65_RS09715	0.76	+1.7
2,050,525	+		DZA65_RS09715	0.76	-0.2
2,050,526	-		DZA65_RS09715	0.76	-0.6
2,050,526	-		DZA65_RS09715	0.76	-1.8
2,050,564	+		DZA65_RS09715	0.79	-0.4
2,050,565	-		DZA65_RS09715	0.80	+0.4
2,050,601	+		DZA65_RS09715	0.83	+0.6
2,050,601	+		DZA65_RS09715	0.83	+0.8
2,050,718	+				-3.2
2,050,732	+				-2.2
2,050,733	-				-1.3
2,050,733	-				-1.8
2,050,733	-				-2.6
2,050,733	-				-0.8
2,050,733	-				-1.0
2,050,738	+				+1.7
2,050,738	+				-2.2
2,050,738	+				+0.0
2,050,738	+				-1.7
2,050,738	+				+0.2
2,050,739	-				+1.0
2,050,838	-				-0.6
2,050,906	+				-1.0
2,050,963	+				-0.6
2,050,963	+		DZA65_RS09720	0.19	+0.3
2,050,963	+		DZA65_RS09720	0.19	-1.3
2,050,963	+		DZA65_RS09720	0.19	-3.0
2,050,963	+		DZA65_RS09720	0.19	+0.0
2,050,963	+		DZA65_RS09720	0.19	-0.6
2,050,964	-		DZA65_RS09720	0.19	-0.3
2,050,964	-		DZA65_RS09720	0.19	-1.3
2,050,977	+		DZA65_RS09720	0.21	-1.6
2,050,977	+		DZA65_RS09720	0.21	+0.3
2,050,977	+		DZA65_RS09720	0.21	+0.6
2,050,978	-		DZA65_RS09720	0.21	-2.7
2,050,978	-		DZA65_RS09720	0.21	+4.2
2,051,097	-		DZA65_RS09720	0.40	-1.8
2,051,097	-		DZA65_RS09720	0.40	-0.8
2,051,121	+		DZA65_RS09720	0.44	-0.6
2,051,122	-				-1.3
2,051,132	+		DZA65_RS09720	0.46	-0.7
2,051,147	-		DZA65_RS09720	0.48	-2.5
2,051,147	-		DZA65_RS09720	0.48	-1.6
2,051,147	-		DZA65_RS09720	0.48	+4.3
2,051,183	+		DZA65_RS09720	0.54	-1.0
2,051,183	+		DZA65_RS09720	0.54	+1.6
2,051,184	-		DZA65_RS09720	0.54	-1.0
2,051,184	-		DZA65_RS09720	0.54	+2.0
2,051,184	-		DZA65_RS09720	0.54	+2.3
2,051,184	-		DZA65_RS09720	0.54	-1.0
2,051,184	-		DZA65_RS09720	0.54	-1.0
2,051,199	+		DZA65_RS09720	0.57	-1.0
2,051,199	+		DZA65_RS09720	0.57	-0.6
2,051,199	+		DZA65_RS09720	0.57	+0.2
2,051,200	-		DZA65_RS09720	0.57	-0.6
2,051,200	-		DZA65_RS09720	0.57	+0.6
2,051,200	-		DZA65_RS09720	0.57	-1.6
2,051,200	-		DZA65_RS09720	0.57	-2.3
2,051,200	-		DZA65_RS09720	0.57	+3.0
2,051,218	+		DZA65_RS09720	0.60	+0.7
2,051,219	-				-0.6
2,051,219	-		DZA65_RS09720	0.60	-2.2
2,051,219	-		DZA65_RS09720	0.60	+1.0
2,051,236	+		DZA65_RS09720	0.63	+1.4
2,051,237	-		DZA65_RS09720	0.63	+0.9
2,051,237	-		DZA65_RS09720	0.63	+0.7
2,051,252	-		DZA65_RS09720	0.65	+0.7
2,051,325	+		DZA65_RS09720	0.77	-1.3
2,051,335	+		DZA65_RS09720	0.79	+0.8
2,051,335	+		DZA65_RS09720	0.79	-0.6
2,051,387	-		DZA65_RS09720	0.87	+1.3
2,051,458	-				-0.4
2,051,551	+				+3.5
2,051,556	-				+1.2
2,051,556	-				-1.0
2,051,570	+				+0.1
2,051,570	+				-2.1
2,051,570	+				-0.2
2,051,571	-				+0.8
2,051,571	-				-1.1
2,051,573	-				-2.0
2,051,573	-				+0.0
2,051,631	+				+4.1
2,051,632	-				+0.0
2,051,651	+				-1.8
2,051,652	-				-0.6
2,051,652	-				+0.0
2,051,652	-				-1.2
2,051,652	-				-0.6
2,051,657	+				-2.0
2,051,657	+				-1.8
2,051,660	-				-2.2
2,051,670	+				-1.2
2,051,671	-				-0.8
2,051,674	+				+0.8
2,051,699	-				+2.0
2,051,702	-				-2.3
2,051,708	+				+0.6
2,051,712	+				-1.3
2,051,731	+				-3.1
2,051,731	+				-1.5
2,051,731	+				+0.6
2,051,731	+				-1.3
2,051,731	+				-0.8
2,051,731	+				-1.3
2,051,731	+				-2.8
2,051,731	+				-0.2
2,051,731	+				+0.6
2,051,731	+				+0.8
2,051,731	+				-0.6
2,051,731	+				+0.2
2,051,732	-				+0.7
2,051,732	-				+0.9
2,051,732	-				+1.4
2,051,732	-				-1.3
2,051,732	-				-1.3
2,051,732	-				+0.0
2,051,732	-				-1.3
2,051,732	-				-1.3
2,051,732	-				+0.0
2,051,732	-				-2.3
2,051,732	-				-2.0
2,051,732	-				-1.0
2,051,733	+				-1.0
2,051,733	+				+1.0
2,051,733	+				-1.4
2,051,733	+				+0.5
2,051,733	+				+0.1
2,051,733	+				-1.0
2,051,733	+				-0.8
2,051,733	+				-2.8
2,051,734	-				+3.0
2,051,734	-				-2.0
2,051,734	-				-1.8
2,051,734	-				+1.0
2,051,737	+				+0.4
2,051,737	+				+0.0
2,051,737	+				-0.3
2,051,738	-				+2.2
2,051,738	-				-0.8
2,051,738	-				-1.0
2,051,738	-				-1.6
2,051,738	-				-2.6
2,051,743	-				-1.8
2,051,743	-				+0.3
2,051,753	+				+1.8
2,051,754	-				+0.0
2,051,755	+				+1.5
2,051,755	+				-1.0
2,051,755	+				+2.0
2,051,756	-				-2.7
2,051,756	-				+2.6
2,051,756	-				-2.2
2,051,756	-				-1.0
2,051,756	-				+2.8
2,051,756	-				-0.6
2,051,756	-				-1.0
2,051,756	-				-1.7
2,051,756	-				-2.2
2,051,756	-				-2.6
2,051,853	+		DZA65_RS09725	0.11	+0.2
2,051,853	+		DZA65_RS09725	0.11	-2.0
2,051,854	-				-1.6
2,051,884	+		DZA65_RS09725	0.15	+1.0
2,051,890	+		DZA65_RS09725	0.16	+1.5
2,051,890	+		DZA65_RS09725	0.16	-2.0
2,051,891	-		DZA65_RS09725	0.16	+0.6
2,051,927	+		DZA65_RS09725	0.20	-0.6
2,051,957	+		DZA65_RS09725	0.24	-0.3
2,051,957	+		DZA65_RS09725	0.24	+1.0
2,051,957	+		DZA65_RS09725	0.24	+2.0
2,051,957	+		DZA65_RS09725	0.24	-0.3
2,051,957	+		DZA65_RS09725	0.24	+0.0
2,051,957	+		DZA65_RS09725	0.24	-0.8
2,051,958	-		DZA65_RS09725	0.24	-1.6
2,051,958	-		DZA65_RS09725	0.24	+1.7
2,051,958	-		DZA65_RS09725	0.24	+1.7
2,052,023	+		DZA65_RS09725	0.32	-1.8
2,052,023	+		DZA65_RS09725	0.32	+1.5
2,052,023	+		DZA65_RS09725	0.32	-1.3
2,052,023	+		DZA65_RS09725	0.32	-0.6
2,052,024	-		DZA65_RS09725	0.32	-0.1
2,052,024	-		DZA65_RS09725	0.32	-1.6
2,052,074	-		DZA65_RS09725	0.38	-1.0
2,052,101	+		DZA65_RS09725	0.41	-1.8
2,052,101	+		DZA65_RS09725	0.41	+2.9
2,052,102	-		DZA65_RS09725	0.41	+2.6
2,052,262	+		DZA65_RS09725	0.60	-1.0
2,052,262	+		DZA65_RS09725	0.60	-0.6
2,052,323	-		DZA65_RS09725	0.67	+2.1