Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08695

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,840,310	+				+0.0
1,840,311	-				-1.3
1,840,315	-				-0.5
1,840,330	+				+1.9
1,840,331	-				+1.5
1,840,331	-				-1.3
1,840,331	-				-2.1
1,840,331	-				-1.0
1,840,333	+				+3.3
1,840,333	+				-0.1
1,840,333	+				+0.0
1,840,334	-				-2.3
1,840,334	-				-0.5
1,840,334	-				-1.8
1,840,349	-				+2.6
1,840,417	+				+1.0
1,840,417	+				+2.6
1,840,418	-				-1.3
1,840,421	+				+0.7
1,840,422	-				+2.6
1,840,446	+				-1.8
1,840,446	+				+0.6
1,840,446	+				-2.1
1,840,446	+				-1.0
1,840,446	+				+1.5
1,840,447	-				+0.0
1,840,447	-				-1.9
1,840,474	+				-1.8
1,840,474	+				-1.0
1,840,475	-				-1.1
1,840,475	-				+2.0
1,840,476	+				+0.7
1,840,476	+				+0.7
1,840,477	-				+0.5
1,840,504	-				-0.5
1,840,535	+				+1.0
1,840,536	-				+1.0
1,840,536	-				-0.5
1,840,536	-				-1.5
1,840,631	-		DZA65_RS08690	0.21	-2.4
1,840,632	+		DZA65_RS08690	0.22	-1.0
1,840,741	+		DZA65_RS08690	0.36	+0.0
1,840,742	-		DZA65_RS08690	0.36	-0.3
1,840,742	-		DZA65_RS08690	0.36	-0.8
1,840,754	+		DZA65_RS08690	0.38	-2.5
1,840,755	-				-2.3
1,840,755	-		DZA65_RS08690	0.38	-1.3
1,840,755	-		DZA65_RS08690	0.38	+0.9
1,840,755	-		DZA65_RS08690	0.38	+3.0
1,840,755	-		DZA65_RS08690	0.38	-0.2
1,840,792	+		DZA65_RS08690	0.42	-0.7
1,840,792	+		DZA65_RS08690	0.42	-1.4
1,840,792	+				-1.5
1,840,793	-		DZA65_RS08690	0.43	+0.2
1,840,793	-		DZA65_RS08690	0.43	-1.3
1,840,793	-		DZA65_RS08690	0.43	+1.2
1,840,854	+		DZA65_RS08690	0.51	-1.0
1,840,854	+		DZA65_RS08690	0.51	+0.0
1,840,914	+		DZA65_RS08690	0.58	-4.8
1,840,918	+		DZA65_RS08690	0.59	+3.6
1,840,919	-		DZA65_RS08690	0.59	-0.1
1,840,951	+		DZA65_RS08690	0.63	+1.7
1,840,952	-		DZA65_RS08690	0.63	+3.9
1,841,021	+		DZA65_RS08690	0.72	-1.5
1,841,022	-		DZA65_RS08690	0.72	+0.2
1,841,086	-		DZA65_RS08690	0.81	+1.9
1,841,129	-		DZA65_RS08690	0.86	+2.4
1,841,192	+				+0.6
1,841,193	-				-1.0
1,841,212	+				+0.2
1,841,266	+				+0.5
1,841,266	+				+1.1
1,841,266	+				-0.5
1,841,315	+				-0.4
1,841,316	-				+1.4
1,841,342	+				+0.8
1,841,342	+				-1.4
1,841,343	-				-0.5
1,841,354	+				+3.8
1,841,404	+				-2.9
1,841,421	+				-2.1
1,841,422	-				-1.3
1,841,433	+				-2.4
1,841,433	+				-1.0
1,841,433	+				-0.1
1,841,434	-				-2.0
1,841,434	-				+2.3
1,841,500	-		DZA65_RS08695	0.12	-1.0
1,841,563	+		DZA65_RS08695	0.16	-1.5
1,841,563	+		DZA65_RS08695	0.16	-2.2
1,841,564	-		DZA65_RS08695	0.16	-1.2
1,841,565	+		DZA65_RS08695	0.17	+0.6
1,841,595	+		DZA65_RS08695	0.18	+3.5
1,841,639	+		DZA65_RS08695	0.21	-2.1
1,841,640	-		DZA65_RS08695	0.21	+2.0
1,841,659	+		DZA65_RS08695	0.22	-1.5
1,841,659	+		DZA65_RS08695	0.22	+1.6
1,841,659	+		DZA65_RS08695	0.22	-1.5
1,841,659	+		DZA65_RS08695	0.22	-0.5
1,841,659	+		DZA65_RS08695	0.22	-1.9
1,841,659	+		DZA65_RS08695	0.22	+0.0
1,841,659	+		DZA65_RS08695	0.22	+0.4
1,841,660	-		DZA65_RS08695	0.23	+1.4
1,841,660	-		DZA65_RS08695	0.23	-0.5
1,841,660	-		DZA65_RS08695	0.23	-0.5
1,841,660	-		DZA65_RS08695	0.23	-1.3
1,841,737	-		DZA65_RS08695	0.27	-0.2
1,841,737	-		DZA65_RS08695	0.27	+0.0
1,841,737	-		DZA65_RS08695	0.27	-1.8
1,841,752	+		DZA65_RS08695	0.28	-0.5
1,841,752	+		DZA65_RS08695	0.28	-1.1
1,841,752	+		DZA65_RS08695	0.28	-1.0
1,841,753	-		DZA65_RS08695	0.28	-1.0
1,841,755	+		DZA65_RS08695	0.29	+0.0
1,841,755	+		DZA65_RS08695	0.29	-2.7
1,841,818	-		DZA65_RS08695	0.33	-1.8
1,841,851	+		DZA65_RS08695	0.35	-1.8
1,841,851	+		DZA65_RS08695	0.35	-1.3
1,841,851	+		DZA65_RS08695	0.35	-2.0
1,841,852	-		DZA65_RS08695	0.35	+0.1
1,841,852	-		DZA65_RS08695	0.35	-2.5
1,841,852	-		DZA65_RS08695	0.35	-2.0
1,841,887	-		DZA65_RS08695	0.37	+1.3
1,841,887	-		DZA65_RS08695	0.37	+0.4
1,841,892	+		DZA65_RS08695	0.37	-0.3
1,841,892	+		DZA65_RS08695	0.37	-1.3
1,842,046	-		DZA65_RS08695	0.47	-1.8
1,842,046	-		DZA65_RS08695	0.47	-1.0
1,842,046	-		DZA65_RS08695	0.47	+0.5
1,842,046	-		DZA65_RS08695	0.47	+1.0
1,842,202	-		DZA65_RS08695	0.57	-0.5
1,842,226	-		DZA65_RS08695	0.58	-0.5
1,842,226	-		DZA65_RS08695	0.58	+0.0
1,842,226	-		DZA65_RS08695	0.58	-1.0
1,842,277	+		DZA65_RS08695	0.62	-0.4
1,842,277	+		DZA65_RS08695	0.62	-1.3
1,842,277	+		DZA65_RS08695	0.62	-1.1
1,842,277	+		DZA65_RS08695	0.62	-1.0
1,842,278	-		DZA65_RS08695	0.62	-1.4
1,842,278	-		DZA65_RS08695	0.62	-2.0
1,842,278	-		DZA65_RS08695	0.62	+1.6
1,842,302	-		DZA65_RS08695	0.63	-0.8
1,842,302	-		DZA65_RS08695	0.63	-0.5
1,842,415	+		DZA65_RS08695	0.70	-0.3
1,842,415	+		DZA65_RS08695	0.70	+1.0
1,842,415	+		DZA65_RS08695	0.70	-1.2
1,842,415	+		DZA65_RS08695	0.70	-0.5
1,842,416	-		DZA65_RS08695	0.71	-3.4
1,842,416	-		DZA65_RS08695	0.71	-1.0
1,842,416	-		DZA65_RS08695	0.71	-0.7
1,842,416	-		DZA65_RS08695	0.71	-0.5
1,842,416	-		DZA65_RS08695	0.71	-0.5
1,842,416	-		DZA65_RS08695	0.71	+1.0
1,842,416	-		DZA65_RS08695	0.71	-1.5
1,842,426	+		DZA65_RS08695	0.71	+0.6
1,842,495	+		DZA65_RS08695	0.76	+1.6
1,842,495	+		DZA65_RS08695	0.76	-1.0
1,842,560	-		DZA65_RS08695	0.80	-1.5
1,842,599	-		DZA65_RS08695	0.82	-1.3
1,842,599	-		DZA65_RS08695	0.82	-0.4
1,842,599	-		DZA65_RS08695	0.82	-0.3
1,842,599	-		DZA65_RS08695	0.82	+1.9
1,842,600	+		DZA65_RS08695	0.82	+0.5
1,842,600	+		DZA65_RS08695	0.82	+0.5
1,842,600	+		DZA65_RS08695	0.82	+0.0
1,842,600	+		DZA65_RS08695	0.82	-1.5
1,842,600	+		DZA65_RS08695	0.82	+0.5
1,842,600	+		DZA65_RS08695	0.82	+0.0
1,842,601	-		DZA65_RS08695	0.82	+1.8
1,842,601	-		DZA65_RS08695	0.82	-1.1
1,842,601	-		DZA65_RS08695	0.82	-1.8
1,842,601	-		DZA65_RS08695	0.82	-1.0
1,842,616	-		DZA65_RS08695	0.83	+1.0
1,842,634	+		DZA65_RS08695	0.84	-1.5
1,842,653	+		DZA65_RS08695	0.86	-0.5
1,842,653	+				-1.0
1,842,653	+		DZA65_RS08695	0.86	-0.3
1,842,693	-		DZA65_RS08695	0.88	-1.8
1,842,732	+				+4.0
1,842,732	+				-2.4
1,842,732	+				-0.3
1,842,733	-				+0.5
1,842,767	+				+1.7
1,842,767	+				-0.6
1,842,769	+				-0.3
1,842,769	+				-1.6
1,842,769	+				+1.5
1,842,769	+				-1.0
1,842,769	+				+4.4
1,842,769	+				-1.5
1,842,769	+				-0.6
1,842,769	+				-0.1
1,842,769	+				-2.0
1,842,769	+				-1.0
1,842,769	+				+0.5
1,842,769	+				-2.4
1,842,769	+				+1.0
1,842,770	-				+1.6
1,842,770	-				+2.3
1,842,770	-				-2.4
1,842,770	-				+2.4
1,842,770	-				+2.3
1,842,770	-				+1.0
1,842,770	-				-2.7
1,842,770	-				-0.3
1,842,771	+				+2.1
1,842,771	+				-1.3
1,842,771	+				-0.1
1,842,772	-				+0.0
1,842,772	-				-1.6
1,842,772	-				+2.7
1,842,805	+				-0.6
1,842,805	+				+1.0
1,842,806	-				+1.5
1,842,806	-				-1.3
1,842,806	-				-1.4
1,842,806	-				-2.3
1,842,806	-				-2.3
1,842,848	-				-0.3
1,842,848	-				-1.6
1,842,848	-				+0.9
1,842,974	-				-2.0
1,842,974	-				-2.1
1,842,989	+				-1.2
1,842,989	+				+2.4
1,842,990	-				+1.6
1,842,990	-				+1.0
1,842,990	-				+0.4
1,843,116	-		DZA65_RS08700	0.16	-2.3
1,843,116	-		DZA65_RS08700	0.16	-1.7
1,843,116	-		DZA65_RS08700	0.16	-0.6
1,843,165	+		DZA65_RS08700	0.22	-1.6
1,843,165	+		DZA65_RS08700	0.22	-0.5
1,843,165	+		DZA65_RS08700	0.22	+0.3
1,843,169	+		DZA65_RS08700	0.22	+1.4
1,843,169	+		DZA65_RS08700	0.22	+1.9
1,843,169	+		DZA65_RS08700	0.22	+0.0
1,843,169	+		DZA65_RS08700	0.22	-1.3
1,843,169	+		DZA65_RS08700	0.22	-0.8
1,843,169	+		DZA65_RS08700	0.22	-1.0
1,843,169	+		DZA65_RS08700	0.22	-1.6
1,843,169	+		DZA65_RS08700	0.22	-2.6
1,843,169	+		DZA65_RS08700	0.22	+1.0
1,843,169	+		DZA65_RS08700	0.22	-0.1
1,843,169	+		DZA65_RS08700	0.22	+2.0
1,843,169	+		DZA65_RS08700	0.22	+0.9
1,843,169	+		DZA65_RS08700	0.22	+0.6
1,843,169	+		DZA65_RS08700	0.22	+2.4
1,843,170	-		DZA65_RS08700	0.22	-1.3
1,843,170	-		DZA65_RS08700	0.22	+4.7
1,843,170	-		DZA65_RS08700	0.22	-2.8
1,843,170	-		DZA65_RS08700	0.22	+1.4
1,843,170	-		DZA65_RS08700	0.22	-0.4
1,843,170	-		DZA65_RS08700	0.22	-1.8
1,843,170	-		DZA65_RS08700	0.22	-1.8
1,843,170	-		DZA65_RS08700	0.22	-0.6
1,843,170	-		DZA65_RS08700	0.22	-0.4
1,843,170	-		DZA65_RS08700	0.22	-3.0
1,843,170	-		DZA65_RS08700	0.22	-0.6
1,843,170	-		DZA65_RS08700	0.22	-2.3
1,843,170	-		DZA65_RS08700	0.22	-1.3
1,843,170	-		DZA65_RS08700	0.22	-1.0
1,843,170	-		DZA65_RS08700	0.22	+1.0
1,843,170	-		DZA65_RS08700	0.22	+0.0
1,843,170	-		DZA65_RS08700	0.22	-2.6
1,843,170	-		DZA65_RS08700	0.22	-2.3
1,843,170	-		DZA65_RS08700	0.22	+0.1
1,843,170	-		DZA65_RS08700	0.22	-1.6
1,843,170	-		DZA65_RS08700	0.22	+1.4
1,843,170	-		DZA65_RS08700	0.22	+1.1
1,843,170	-		DZA65_RS08700	0.22	-2.1
1,843,170	-		DZA65_RS08700	0.22	-1.3
1,843,170	-		DZA65_RS08700	0.22	-3.1
1,843,170	-		DZA65_RS08700	0.22	+1.6
1,843,170	-		DZA65_RS08700	0.22	+0.0
1,843,170	-		DZA65_RS08700	0.22	+0.4
1,843,270	+		DZA65_RS08700	0.33	+1.7
1,843,271	-		DZA65_RS08700	0.33	+1.7
1,843,299	-		DZA65_RS08700	0.36	-2.0
1,843,299	-		DZA65_RS08700	0.36	-2.4
1,843,401	+		DZA65_RS08700	0.47	-0.6
1,843,401	+		DZA65_RS08700	0.47	-0.9
1,843,402	-		DZA65_RS08700	0.47	+0.0
1,843,402	-		DZA65_RS08700	0.47	+1.0
1,843,402	-		DZA65_RS08700	0.47	+0.0
1,843,402	-		DZA65_RS08700	0.47	-1.9
1,843,405	+		DZA65_RS08700	0.47	-0.7
1,843,406	-				-2.1
1,843,406	-		DZA65_RS08700	0.47	-2.1
1,843,471	-		DZA65_RS08700	0.54	+0.0
1,843,471	-		DZA65_RS08700	0.54	-1.8
1,843,522	+		DZA65_RS08700	0.60	+3.1
1,843,522	+		DZA65_RS08700	0.60	-2.8
1,843,534	+		DZA65_RS08700	0.61	-1.6
1,843,534	+		DZA65_RS08700	0.61	+0.2
1,843,534	+		DZA65_RS08700	0.61	-2.0
1,843,534	+		DZA65_RS08700	0.61	-1.0
1,843,534	+		DZA65_RS08700	0.61	-0.8
1,843,534	+		DZA65_RS08700	0.61	-2.4
1,843,534	+		DZA65_RS08700	0.61	-0.6
1,843,534	+		DZA65_RS08700	0.61	+0.2
1,843,534	+		DZA65_RS08700	0.61	+0.3
1,843,534	+		DZA65_RS08700	0.61	-2.4
1,843,534	+		DZA65_RS08700	0.61	-0.1
1,843,535	-		DZA65_RS08700	0.61	+0.4
1,843,535	-		DZA65_RS08700	0.61	-0.3
1,843,535	-		DZA65_RS08700	0.61	-2.0
1,843,535	-		DZA65_RS08700	0.61	-0.2
1,843,535	-		DZA65_RS08700	0.61	-0.6
1,843,535	-		DZA65_RS08700	0.61	+0.4
1,843,535	-		DZA65_RS08700	0.61	-2.0
1,843,535	-		DZA65_RS08700	0.61	-2.7
1,843,535	-		DZA65_RS08700	0.61	+0.0
1,843,535	-		DZA65_RS08700	0.61	+2.9
1,843,536	+		DZA65_RS08700	0.61	+0.8
1,843,537	-		DZA65_RS08700	0.61	-1.3
1,843,567	-		DZA65_RS08700	0.65	+0.8
1,843,567	-		DZA65_RS08700	0.65	-1.1
1,843,582	+		DZA65_RS08700	0.66	+1.6
1,843,582	+		DZA65_RS08700	0.66	-0.6
1,843,582	+		DZA65_RS08700	0.66	-1.3
1,843,582	+		DZA65_RS08700	0.66	+1.0
1,843,582	+		DZA65_RS08700	0.66	+1.7
1,843,591	+		DZA65_RS08700	0.67	+2.2
1,843,591	+		DZA65_RS08700	0.67	-1.6
1,843,591	+		DZA65_RS08700	0.67	-0.6
1,843,591	+		DZA65_RS08700	0.67	-1.0
1,843,591	+		DZA65_RS08700	0.67	-1.3
1,843,592	-		DZA65_RS08700	0.67	-2.3
1,843,676	+		DZA65_RS08700	0.76	-2.1
1,843,725	+		DZA65_RS08700	0.82	+1.0
1,843,725	+		DZA65_RS08700	0.82	-1.0
1,843,726	-		DZA65_RS08700	0.82	-1.1
1,843,784	-		DZA65_RS08700	0.88	+2.8
1,843,784	-		DZA65_RS08700	0.88	+1.7
1,843,801	+		DZA65_RS08700	0.90	-2.4
1,843,801	+		DZA65_RS08700	0.90	-1.5
1,843,801	+		DZA65_RS08700	0.90	-2.0
1,843,801	+		DZA65_RS08700	0.90	+1.0
1,843,801	+		DZA65_RS08700	0.90	+1.4
1,843,801	+		DZA65_RS08700	0.90	-1.2
1,843,801	+		DZA65_RS08700	0.90	+0.0
1,843,801	+		DZA65_RS08700	0.90	-1.3
1,843,802	-		DZA65_RS08700	0.90	+1.5
1,843,802	-		DZA65_RS08700	0.90	+0.0
1,843,802	-		DZA65_RS08700	0.90	+0.3
1,843,802	-		DZA65_RS08700	0.90	-1.6
1,843,802	-		DZA65_RS08700	0.90	-0.3
1,843,802	-		DZA65_RS08700	0.90	-1.7
1,843,802	-		DZA65_RS08700	0.90	+1.4
1,843,802	-		DZA65_RS08700	0.90	+1.0
1,843,802	-		DZA65_RS08700	0.90	-0.4
1,843,802	-		DZA65_RS08700	0.90	-0.6
1,843,802	-		DZA65_RS08700	0.90	+0.0
1,843,802	-		DZA65_RS08700	0.90	+0.0
1,843,802	-		DZA65_RS08700	0.90	-0.2
1,843,836	+				-1.6