Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08625

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,824,805	+		DZA65_RS08620	0.23	-1.1
1,824,805	+		DZA65_RS08620	0.23	+0.5
1,824,805	+		DZA65_RS08620	0.23	+0.9
1,824,805	+		DZA65_RS08620	0.23	-1.7
1,824,805	+		DZA65_RS08620	0.23	-0.5
1,824,805	+		DZA65_RS08620	0.23	-1.5
1,824,806	-		DZA65_RS08620	0.23	-0.8
1,824,806	-		DZA65_RS08620	0.23	-0.7
1,824,806	-		DZA65_RS08620	0.23	-1.3
1,824,808	+		DZA65_RS08620	0.23	+0.8
1,824,808	+		DZA65_RS08620	0.23	+3.1
1,824,808	+		DZA65_RS08620	0.23	+0.4
1,824,808	+		DZA65_RS08620	0.23	+1.7
1,824,809	-		DZA65_RS08620	0.23	-0.9
1,824,809	-		DZA65_RS08620	0.23	+2.4
1,824,809	-		DZA65_RS08620	0.23	-0.5
1,824,865	+		DZA65_RS08620	0.29	+1.3
1,824,898	+		DZA65_RS08620	0.33	-2.6
1,824,898	+		DZA65_RS08620	0.33	-0.4
1,824,899	-		DZA65_RS08620	0.33	-0.5
1,825,075	+		DZA65_RS08620	0.52	+1.5
1,825,076	-		DZA65_RS08620	0.52	-1.5
1,825,076	-		DZA65_RS08620	0.52	+1.4
1,825,076	-		DZA65_RS08620	0.52	-0.7
1,825,076	-		DZA65_RS08620	0.52	+1.1
1,825,076	-		DZA65_RS08620	0.52	+2.7
1,825,076	-		DZA65_RS08620	0.52	-0.5
1,825,076	-		DZA65_RS08620	0.52	-0.5
1,825,076	-		DZA65_RS08620	0.52	-0.7
1,825,078	+		DZA65_RS08620	0.52	-2.5
1,825,078	+		DZA65_RS08620	0.52	-0.7
1,825,079	-		DZA65_RS08620	0.52	-1.3
1,825,174	+		DZA65_RS08620	0.62	-1.3
1,825,174	+		DZA65_RS08620	0.62	-2.9
1,825,175	-		DZA65_RS08620	0.62	+5.4
1,825,175	-		DZA65_RS08620	0.62	-1.0
1,825,175	-		DZA65_RS08620	0.62	-1.5
1,825,262	-		DZA65_RS08620	0.72	-1.9
1,825,262	-		DZA65_RS08620	0.72	-2.3
1,825,264	-		DZA65_RS08620	0.72	-0.3
1,825,280	-		DZA65_RS08620	0.74	-0.5
1,825,547	+				+0.0
1,825,548	-				+0.8
1,825,599	-				+0.1
1,825,599	-				-2.6
1,825,599	-				-1.5
1,825,599	-				-0.9
1,825,599	-				+0.4
1,825,618	+				-1.3
1,825,625	+				-2.1
1,825,625	+				-2.2
1,825,626	-				+3.7
1,825,708	+				-1.5
1,825,708	+				-1.7
1,825,708	+				+0.1
1,825,717	+				-2.1
1,825,717	+				+1.7
1,825,718	-				-1.3
1,825,718	-				+1.1
1,825,718	-				-0.2
1,825,718	-				-1.4
1,825,728	+				+1.4
1,825,728	+				-0.9
1,825,729	-				-0.2
1,825,750	-				-1.3
1,825,750	-				-1.1
1,825,750	-				-2.4
1,825,777	+				+0.1
1,825,777	+				+0.3
1,825,777	+				+0.6
1,825,777	+				-0.9
1,825,777	+				+1.2
1,825,777	+				+2.2
1,825,778	-				-2.5
1,825,778	-				-1.3
1,825,778	-				+1.5
1,825,778	-				-1.5
1,825,778	-				-1.3
1,825,779	+				-2.5
1,825,779	+				+0.1
1,825,780	-				-1.7
1,825,780	-				-0.1
1,825,780	-				-1.9
1,825,780	-				-0.3
1,825,788	+				-2.4
1,825,789	-				-1.1
1,825,789	-				-0.7
1,825,789	-				-0.7
1,825,792	-				+1.1
1,825,794	+				-0.7
1,825,794	+				-1.3
1,825,794	+				+0.1
1,825,794	+				+1.1
1,825,794	+				-0.3
1,825,794	+				-1.7
1,825,795	-				-0.1
1,825,795	-				+3.1
1,825,842	+				+1.3
1,825,858	-				+0.6
1,825,858	-				-0.5
1,825,858	-				-1.5
1,825,930	+				-2.3
1,825,931	-				-2.3
1,825,931	-				+0.1
1,826,004	+		DZA65_RS08625	0.14	+1.2
1,826,004	+		DZA65_RS08625	0.14	+0.1
1,826,004	+		DZA65_RS08625	0.14	-1.5
1,826,004	+		DZA65_RS08625	0.14	-0.7
1,826,004	+		DZA65_RS08625	0.14	-0.5
1,826,004	+		DZA65_RS08625	0.14	-0.0
1,826,005	-		DZA65_RS08625	0.14	-2.4
1,826,138	-		DZA65_RS08625	0.23	-1.3
1,826,191	+		DZA65_RS08625	0.26	-0.9
1,826,191	+		DZA65_RS08625	0.26	-1.5
1,826,191	+		DZA65_RS08625	0.26	-1.9
1,826,191	+		DZA65_RS08625	0.26	+0.1
1,826,192	-		DZA65_RS08625	0.26	+2.0
1,826,192	-		DZA65_RS08625	0.26	+0.1
1,826,192	-		DZA65_RS08625	0.26	-0.4
1,826,192	-		DZA65_RS08625	0.26	+0.7
1,826,192	-		DZA65_RS08625	0.26	-1.8
1,826,192	-		DZA65_RS08625	0.26	-1.3
1,826,192	-		DZA65_RS08625	0.26	+2.1
1,826,192	-		DZA65_RS08625	0.26	-1.5
1,826,193	+		DZA65_RS08625	0.26	-2.1
1,826,193	+		DZA65_RS08625	0.26	+1.3
1,826,193	+		DZA65_RS08625	0.26	+0.1
1,826,193	+		DZA65_RS08625	0.26	+1.6
1,826,193	+		DZA65_RS08625	0.26	+2.2
1,826,193	+		DZA65_RS08625	0.26	+0.6
1,826,193	+		DZA65_RS08625	0.26	+1.5
1,826,194	-		DZA65_RS08625	0.27	-3.7
1,826,194	-		DZA65_RS08625	0.27	+0.3
1,826,194	-		DZA65_RS08625	0.27	+0.1
1,826,194	-		DZA65_RS08625	0.27	-0.9
1,826,197	+		DZA65_RS08625	0.27	-1.4
1,826,197	+		DZA65_RS08625	0.27	-1.9
1,826,197	+		DZA65_RS08625	0.27	+0.5
1,826,198	-		DZA65_RS08625	0.27	-0.5
1,826,198	-		DZA65_RS08625	0.27	-2.1
1,826,198	-		DZA65_RS08625	0.27	+3.4
1,826,199	+		DZA65_RS08625	0.27	-0.9
1,826,199	+		DZA65_RS08625	0.27	-0.5
1,826,200	-		DZA65_RS08625	0.27	-1.3
1,826,200	-		DZA65_RS08625	0.27	-2.0
1,826,200	-		DZA65_RS08625	0.27	-0.3
1,826,200	-		DZA65_RS08625	0.27	+1.9
1,826,218	+		DZA65_RS08625	0.28	+0.5
1,826,241	+		DZA65_RS08625	0.30	-1.3
1,826,242	-		DZA65_RS08625	0.30	+1.1
1,826,244	+		DZA65_RS08625	0.30	-2.1
1,826,244	+		DZA65_RS08625	0.30	+0.1
1,826,244	+		DZA65_RS08625	0.30	+0.1
1,826,255	+		DZA65_RS08625	0.30	+1.7
1,826,256	-		DZA65_RS08625	0.31	-2.3
1,826,266	-		DZA65_RS08625	0.31	-0.3
1,826,299	-		DZA65_RS08625	0.33	+0.3
1,826,302	-		DZA65_RS08625	0.33	-1.5
1,826,373	+		DZA65_RS08625	0.38	+0.1
1,826,377	+		DZA65_RS08625	0.38	+1.0
1,826,377	+		DZA65_RS08625	0.38	-1.5
1,826,377	+		DZA65_RS08625	0.38	-1.7
1,826,377	+				-0.9
1,826,378	-		DZA65_RS08625	0.38	+2.2
1,826,392	+		DZA65_RS08625	0.39	+2.1
1,826,398	+		DZA65_RS08625	0.40	-1.3
1,826,399	-		DZA65_RS08625	0.40	-0.9
1,826,413	+		DZA65_RS08625	0.41	-1.3
1,826,414	-		DZA65_RS08625	0.41	-1.9
1,826,414	-		DZA65_RS08625	0.41	+3.6
1,826,414	-		DZA65_RS08625	0.41	-1.9
1,826,414	-		DZA65_RS08625	0.41	+2.6
1,826,414	-		DZA65_RS08625	0.41	-0.9
1,826,414	-		DZA65_RS08625	0.41	+0.1
1,826,458	+		DZA65_RS08625	0.43	-0.5
1,826,459	-		DZA65_RS08625	0.44	+1.1
1,826,459	-		DZA65_RS08625	0.44	+1.1
1,826,483	-		DZA65_RS08625	0.45	+2.1
1,826,483	-		DZA65_RS08625	0.45	-1.1
1,826,484	+		DZA65_RS08625	0.45	-1.5
1,826,484	+		DZA65_RS08625	0.45	-1.7
1,826,484	+		DZA65_RS08625	0.45	-2.5
1,826,484	+		DZA65_RS08625	0.45	-1.1
1,826,484	+		DZA65_RS08625	0.45	-1.7
1,826,485	-		DZA65_RS08625	0.45	+2.0
1,826,485	-				+2.1
1,826,485	-		DZA65_RS08625	0.45	-2.4
1,826,485	-		DZA65_RS08625	0.45	+0.5
1,826,485	-		DZA65_RS08625	0.45	-2.1
1,826,487	+		DZA65_RS08625	0.45	-0.3
1,826,487	+				+0.1
1,826,487	+		DZA65_RS08625	0.45	+0.0
1,826,488	-		DZA65_RS08625	0.45	-2.6
1,826,488	-		DZA65_RS08625	0.45	-1.7
1,826,491	-		DZA65_RS08625	0.46	-0.1
1,826,491	-		DZA65_RS08625	0.46	+1.2
1,826,491	-		DZA65_RS08625	0.46	-0.8
1,826,491	-		DZA65_RS08625	0.46	+3.4
1,826,553	+		DZA65_RS08625	0.50	-1.3
1,826,553	+		DZA65_RS08625	0.50	-0.3
1,826,577	+		DZA65_RS08625	0.51	+0.5
1,826,577	+		DZA65_RS08625	0.51	-0.9
1,826,578	-		DZA65_RS08625	0.51	+0.5
1,826,596	+		DZA65_RS08625	0.52	+0.2
1,826,596	+		DZA65_RS08625	0.52	-1.5
1,826,596	+		DZA65_RS08625	0.52	-0.9
1,826,596	+		DZA65_RS08625	0.52	+3.1
1,826,679	+		DZA65_RS08625	0.58	+1.6
1,826,679	+		DZA65_RS08625	0.58	+4.3
1,826,679	+		DZA65_RS08625	0.58	+0.1
1,826,679	+		DZA65_RS08625	0.58	-1.5
1,826,680	-		DZA65_RS08625	0.58	-0.7
1,826,700	+		DZA65_RS08625	0.59	-0.5
1,826,701	-		DZA65_RS08625	0.59	+0.1
1,826,701	-		DZA65_RS08625	0.59	+0.1
1,826,701	-		DZA65_RS08625	0.59	-1.5
1,826,701	-		DZA65_RS08625	0.59	+3.4
1,826,817	+		DZA65_RS08625	0.66	-1.5
1,826,887	+		DZA65_RS08625	0.71	-2.1
1,826,887	+		DZA65_RS08625	0.71	-1.6
1,826,887	+		DZA65_RS08625	0.71	-1.5
1,826,887	+		DZA65_RS08625	0.71	-0.9
1,826,943	+		DZA65_RS08625	0.75	-0.3
1,826,943	+		DZA65_RS08625	0.75	+0.5
1,826,943	+		DZA65_RS08625	0.75	+0.1
1,826,944	-		DZA65_RS08625	0.75	-1.3
1,826,944	-		DZA65_RS08625	0.75	+2.2
1,826,972	-		DZA65_RS08625	0.76	+1.1
1,826,972	-		DZA65_RS08625	0.76	+0.1
1,826,983	+		DZA65_RS08625	0.77	-1.4
1,826,983	+		DZA65_RS08625	0.77	+0.6
1,826,984	-		DZA65_RS08625	0.77	-3.3
1,826,984	-		DZA65_RS08625	0.77	+0.1
1,826,984	-		DZA65_RS08625	0.77	+0.1
1,826,984	-		DZA65_RS08625	0.77	-2.7
1,827,062	+		DZA65_RS08625	0.82	+0.1
1,827,063	-		DZA65_RS08625	0.82	+0.1
1,827,063	-		DZA65_RS08625	0.82	-1.7
1,827,158	+		DZA65_RS08625	0.88	-2.8
1,827,158	+		DZA65_RS08625	0.88	+1.1
1,827,229	+				+3.6
1,827,229	+				+0.1
1,827,229	+				-2.1
1,827,230	-				+0.8
1,827,259	-				+0.1
1,827,295	+				-0.7
1,827,296	-				+0.5
1,827,296	-				-1.0
1,827,322	+				-0.0
1,827,322	+				+2.1
1,827,337	+				+0.4
1,827,338	-				+3.4
1,827,338	-				+1.1
1,827,338	-				-0.7
1,827,338	-				+1.8
1,827,338	-				+0.1
1,827,386	+				-1.3
1,827,387	-				+0.5
1,827,395	-				+2.9
1,827,420	-				+1.2
1,827,420	-				-0.5
1,827,420	-				-1.3
1,827,631	+				+1.1
1,827,631	+				-1.3
1,827,631	+				+0.8
1,827,811	+		DZA65_RS08630	0.30	+0.1
1,827,811	+		DZA65_RS08630	0.30	-0.9
1,827,811	+		DZA65_RS08630	0.30	+0.7
1,827,811	+		DZA65_RS08630	0.30	-1.9
1,827,811	+		DZA65_RS08630	0.30	+0.1
1,827,811	+		DZA65_RS08630	0.30	-2.1
1,827,812	-		DZA65_RS08630	0.30	-1.5
1,827,812	-		DZA65_RS08630	0.30	-0.3
1,827,812	-		DZA65_RS08630	0.30	-3.2
1,827,812	-		DZA65_RS08630	0.30	+1.1
1,827,812	-		DZA65_RS08630	0.30	-1.3
1,827,812	-		DZA65_RS08630	0.30	+0.5
1,827,812	-		DZA65_RS08630	0.30	-0.3
1,827,812	-		DZA65_RS08630	0.30	-1.9
1,827,812	-		DZA65_RS08630	0.30	+0.1
1,827,812	-		DZA65_RS08630	0.30	+1.8
1,827,812	-		DZA65_RS08630	0.30	-2.6
1,827,812	-		DZA65_RS08630	0.30	-2.8
1,827,812	-		DZA65_RS08630	0.30	-1.7
1,827,836	+		DZA65_RS08630	0.33	+0.2
1,828,003	+		DZA65_RS08630	0.52	+0.7
1,828,003	+		DZA65_RS08630	0.52	-1.7
1,828,003	+		DZA65_RS08630	0.52	+0.9
1,828,003	+		DZA65_RS08630	0.52	+0.4
1,828,004	-		DZA65_RS08630	0.53	-2.4
1,828,004	-		DZA65_RS08630	0.53	-0.7
1,828,063	+		DZA65_RS08630	0.60	+0.7
1,828,215	+		DZA65_RS08630	0.78	+0.1
1,828,237	-		DZA65_RS08630	0.80	-2.1
1,828,242	-		DZA65_RS08630	0.81	+1.2
1,828,309	+		DZA65_RS08630	0.89	+0.3
1,828,309	+		DZA65_RS08630	0.89	+4.4
1,828,310	-		DZA65_RS08630	0.89	-1.0
1,828,310	-		DZA65_RS08630	0.89	+0.5
1,828,310	-		DZA65_RS08630	0.89	-0.1
1,828,310	-		DZA65_RS08630	0.89	-0.9
1,828,310	-		DZA65_RS08630	0.89	-0.5