Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08510

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,792,556	+				-1.1
1,792,556	+				+0.6
1,792,556	+				+1.1
1,792,556	+				-1.9
1,792,557	-				+0.1
1,792,557	-				+1.5
1,792,591	+				-0.9
1,792,591	+				+1.1
1,792,596	+				-0.1
1,792,596	+				-0.5
1,792,596	+				-0.9
1,792,618	+				+0.9
1,792,619	-				-1.1
1,792,649	+				+0.5
1,792,650	-				+0.5
1,792,678	+				+0.4
1,792,679	-				+1.3
1,792,693	+				-0.4
1,792,700	+				-2.1
1,792,700	+				-1.5
1,792,701	-				+4.9
1,792,845	+		DZA65_RS08505	0.27	-1.1
1,792,845	+		DZA65_RS08505	0.27	+0.3
1,792,845	+		DZA65_RS08505	0.27	+1.9
1,792,845	+		DZA65_RS08505	0.27	-1.7
1,792,846	-		DZA65_RS08505	0.27	-0.5
1,792,846	-		DZA65_RS08505	0.27	+0.8
1,792,846	-		DZA65_RS08505	0.27	-0.3
1,792,846	-		DZA65_RS08505	0.27	+0.9
1,792,846	-		DZA65_RS08505	0.27	-1.5
1,792,864	+		DZA65_RS08505	0.30	-3.3
1,792,865	-		DZA65_RS08505	0.30	-1.2
1,792,865	-		DZA65_RS08505	0.30	-1.7
1,792,943	+		DZA65_RS08505	0.39	+1.6
1,792,943	+		DZA65_RS08505	0.39	-2.1
1,792,943	+		DZA65_RS08505	0.39	+3.4
1,792,943	+		DZA65_RS08505	0.39	-0.7
1,792,944	-		DZA65_RS08505	0.40	-1.5
1,792,944	-		DZA65_RS08505	0.40	-1.2
1,792,999	-		DZA65_RS08505	0.46	-0.9
1,793,010	+		DZA65_RS08505	0.48	-1.2
1,793,010	+		DZA65_RS08505	0.48	-1.5
1,793,010	+		DZA65_RS08505	0.48	-0.7
1,793,010	+		DZA65_RS08505	0.48	+1.8
1,793,010	+		DZA65_RS08505	0.48	-2.2
1,793,096	+		DZA65_RS08505	0.58	-1.2
1,793,096	+		DZA65_RS08505	0.58	-2.0
1,793,097	-		DZA65_RS08505	0.58	-0.9
1,793,097	-		DZA65_RS08505	0.58	-1.9
1,793,111	-		DZA65_RS08505	0.60	+2.7
1,793,201	-		DZA65_RS08505	0.71	+1.1
1,793,204	+		DZA65_RS08505	0.72	+1.9
1,793,205	-		DZA65_RS08505	0.72	-0.5
1,793,212	+		DZA65_RS08505	0.73	+2.8
1,793,213	-		DZA65_RS08505	0.73	+0.1
1,793,253	-		DZA65_RS08505	0.78	-1.7
1,793,384	+				+1.1
1,793,384	+				+0.7
1,793,384	+				-0.4
1,793,431	+				+3.1
1,793,434	+				-1.4
1,793,434	+				-1.9
1,793,434	+				-0.9
1,793,434	+				-0.9
1,793,434	+				+2.8
1,793,435	-				-1.5
1,793,435	-				-1.5
1,793,435	-				+1.1
1,793,435	-				-2.0
1,793,435	-				+0.3
1,793,457	+				-1.1
1,793,457	+				+1.1
1,793,457	+				+1.1
1,793,458	-				-0.5
1,793,515	+				+3.0
1,793,515	+				+2.1
1,793,515	+				+0.9
1,793,515	+				-0.7
1,793,515	+				+1.5
1,793,515	+				-1.5
1,793,515	+				+0.1
1,793,515	+				-0.6
1,793,515	+				-0.7
1,793,515	+				-4.8
1,793,515	+				-0.2
1,793,515	+				-2.0
1,793,516	-				+0.4
1,793,516	-				-1.3
1,793,516	-				-0.5
1,793,516	-				+1.1
1,793,516	-				-1.5
1,793,516	-				-1.5
1,793,578	+				-0.9
1,793,578	+				-0.9
1,793,578	+				+1.4
1,793,578	+				+1.1
1,793,579	-				-2.5
1,793,579	-				+1.3
1,793,670	+				-1.9
1,793,670	+				+0.8
1,793,670	+				-1.9
1,793,671	-				-1.9
1,793,671	-				+1.1
1,793,671	-				-0.0
1,793,987	+		DZA65_RS08510	0.17	-2.4
1,793,987	+		DZA65_RS08510	0.17	-1.7
1,793,988	-		DZA65_RS08510	0.17	+0.8
1,793,988	-		DZA65_RS08510	0.17	-1.0
1,794,155	+		DZA65_RS08510	0.22	+0.3
1,794,156	-		DZA65_RS08510	0.22	-0.9
1,794,218	+		DZA65_RS08510	0.24	-1.5
1,794,218	+		DZA65_RS08510	0.24	-0.9
1,794,218	+		DZA65_RS08510	0.24	-1.2
1,794,219	-		DZA65_RS08510	0.24	-1.5
1,794,219	-		DZA65_RS08510	0.24	-1.5
1,794,300	+		DZA65_RS08510	0.27	+0.1
1,794,301	-		DZA65_RS08510	0.27	+1.1
1,794,308	+		DZA65_RS08510	0.27	-2.4
1,794,315	+		DZA65_RS08510	0.27	-0.5
1,794,348	+		DZA65_RS08510	0.28	+0.1
1,794,348	+		DZA65_RS08510	0.28	-0.7
1,794,379	-		DZA65_RS08510	0.29	-2.9
1,794,435	-		DZA65_RS08510	0.31	+0.1
1,794,564	+		DZA65_RS08510	0.36	+3.5
1,794,564	+		DZA65_RS08510	0.36	+0.1
1,794,564	+		DZA65_RS08510	0.36	-0.7
1,794,564	+		DZA65_RS08510	0.36	+0.2
1,794,564	+		DZA65_RS08510	0.36	+0.1
1,794,565	-		DZA65_RS08510	0.36	-1.7
1,794,565	-		DZA65_RS08510	0.36	-1.2
1,794,656	+		DZA65_RS08510	0.39	-0.5
1,794,657	-		DZA65_RS08510	0.39	+1.4
1,794,745	+		DZA65_RS08510	0.41	-0.9
1,794,745	+		DZA65_RS08510	0.41	-0.9
1,794,745	+		DZA65_RS08510	0.41	-1.5
1,794,746	-		DZA65_RS08510	0.41	-2.3
1,794,746	-		DZA65_RS08510	0.41	-0.5
1,795,003	+		DZA65_RS08510	0.50	+0.5
1,795,003	+		DZA65_RS08510	0.50	+1.8
1,795,003	+		DZA65_RS08510	0.50	+0.9
1,795,003	+		DZA65_RS08510	0.50	+2.1
1,795,003	+		DZA65_RS08510	0.50	-1.5
1,795,004	-		DZA65_RS08510	0.50	-0.7
1,795,004	-		DZA65_RS08510	0.50	+3.2
1,795,004	-		DZA65_RS08510	0.50	-1.2
1,795,004	-		DZA65_RS08510	0.50	+1.4
1,795,007	+		DZA65_RS08510	0.50	-0.9
1,795,018	+		DZA65_RS08510	0.50	-1.5
1,795,018	+		DZA65_RS08510	0.50	+1.8
1,795,018	+		DZA65_RS08510	0.50	-1.9
1,795,018	+		DZA65_RS08510	0.50	-0.5
1,795,019	-		DZA65_RS08510	0.50	+0.5
1,795,019	-		DZA65_RS08510	0.50	+0.1
1,795,019	-		DZA65_RS08510	0.50	-0.5
1,795,019	-		DZA65_RS08510	0.50	+0.9
1,795,019	-		DZA65_RS08510	0.50	-0.1
1,795,019	-		DZA65_RS08510	0.50	+2.8
1,795,019	-		DZA65_RS08510	0.50	-1.9
1,795,019	-		DZA65_RS08510	0.50	-1.9
1,795,019	-				+1.1
1,795,022	+		DZA65_RS08510	0.50	+4.2
1,795,022	+		DZA65_RS08510	0.50	+0.6
1,795,022	+		DZA65_RS08510	0.50	-1.5
1,795,022	+		DZA65_RS08510	0.50	+1.1
1,795,023	-		DZA65_RS08510	0.50	+1.1
1,795,078	+		DZA65_RS08510	0.52	-0.4
1,795,078	+		DZA65_RS08510	0.52	+0.1
1,795,142	+		DZA65_RS08510	0.54	+0.1
1,795,142	+		DZA65_RS08510	0.54	-1.2
1,795,142	+		DZA65_RS08510	0.54	+3.8
1,795,142	+		DZA65_RS08510	0.54	-0.5
1,795,142	+		DZA65_RS08510	0.54	-0.4
1,795,142	+		DZA65_RS08510	0.54	+2.2
1,795,142	+		DZA65_RS08510	0.54	+1.4
1,795,142	+		DZA65_RS08510	0.54	-2.1
1,795,142	+		DZA65_RS08510	0.54	+2.9
1,795,142	+		DZA65_RS08510	0.54	+1.6
1,795,143	-		DZA65_RS08510	0.54	+1.7
1,795,143	-		DZA65_RS08510	0.54	+4.2
1,795,143	-		DZA65_RS08510	0.54	-1.5
1,795,143	-		DZA65_RS08510	0.54	+1.6
1,795,143	-		DZA65_RS08510	0.54	-1.9
1,795,143	-		DZA65_RS08510	0.54	-0.4
1,795,143	-		DZA65_RS08510	0.54	+0.2
1,795,143	-		DZA65_RS08510	0.54	+0.1
1,795,143	-		DZA65_RS08510	0.54	-0.5
1,795,143	-		DZA65_RS08510	0.54	+0.5
1,795,143	-		DZA65_RS08510	0.54	-1.2
1,795,143	-		DZA65_RS08510	0.54	+0.8
1,795,143	-		DZA65_RS08510	0.54	-1.6
1,795,143	-		DZA65_RS08510	0.54	-1.4
1,795,143	-		DZA65_RS08510	0.54	+2.4
1,795,153	+		DZA65_RS08510	0.55	+3.4
1,795,153	+		DZA65_RS08510	0.55	-0.5
1,795,153	+		DZA65_RS08510	0.55	-3.4
1,795,154	-		DZA65_RS08510	0.55	+1.3
1,795,154	-				+2.3
1,795,154	-		DZA65_RS08510	0.55	+3.1
1,795,154	-		DZA65_RS08510	0.55	-0.7
1,795,154	-		DZA65_RS08510	0.55	-2.5
1,795,154	-		DZA65_RS08510	0.55	+0.1
1,795,154	-		DZA65_RS08510	0.55	+2.7
1,795,277	-		DZA65_RS08510	0.59	+0.5
1,795,277	-		DZA65_RS08510	0.59	-0.5
1,795,533	+		DZA65_RS08510	0.67	-1.2
1,795,534	-		DZA65_RS08510	0.67	-0.9
1,795,733	-		DZA65_RS08510	0.74	+1.3
1,795,887	+		DZA65_RS08510	0.79	-2.1
1,795,887	+		DZA65_RS08510	0.79	-1.2
1,795,887	+		DZA65_RS08510	0.79	+0.1
1,795,887	+		DZA65_RS08510	0.79	+0.1
1,795,888	-		DZA65_RS08510	0.79	-0.1
1,795,888	-		DZA65_RS08510	0.79	-0.2
1,795,888	-		DZA65_RS08510	0.79	+1.1
1,795,888	-		DZA65_RS08510	0.79	-1.2
1,795,888	-		DZA65_RS08510	0.79	+0.5
1,795,917	-		DZA65_RS08510	0.80	-0.9
1,795,940	+		DZA65_RS08510	0.80	+0.8
1,795,940	+		DZA65_RS08510	0.80	-1.2
1,795,940	+		DZA65_RS08510	0.80	+4.3
1,795,941	-		DZA65_RS08510	0.80	+1.6
1,795,997	+		DZA65_RS08510	0.82	-1.7
1,795,997	+		DZA65_RS08510	0.82	+1.9
1,795,997	+		DZA65_RS08510	0.82	+0.9
1,795,998	-		DZA65_RS08510	0.82	+2.3
1,795,998	-		DZA65_RS08510	0.82	-0.3
1,796,122	+		DZA65_RS08510	0.86	-1.2
1,796,122	+		DZA65_RS08510	0.86	+2.6
1,796,123	-		DZA65_RS08510	0.86	-1.1
1,796,189	+		DZA65_RS08510	0.89	-0.2
1,796,190	-		DZA65_RS08510	0.89	+0.2
1,796,201	-		DZA65_RS08510	0.89	-2.6
1,796,201	-		DZA65_RS08510	0.89	-2.2
1,796,201	-		DZA65_RS08510	0.89	+1.1
1,796,255	+				-2.5
1,796,255	+				-0.5
1,796,256	-				-1.7
1,796,278	+				-0.7
1,796,279	-				+3.1
1,796,279	-				-0.8
1,796,279	-				+1.1
1,796,279	-				-1.5
1,796,279	-				-2.2
1,796,279	-				+3.1
1,796,279	-				-1.7
1,796,279	-				+6.6
1,796,296	+				+2.7
1,796,296	+				-0.5
1,796,297	-				-0.9
1,796,405	+				+0.4
1,796,406	-				+0.3
1,796,406	-				-0.1
1,796,406	-				-0.9
1,796,630	+				-0.7
1,796,630	+				-0.2
1,796,630	+				-0.9
1,796,630	+				+1.7
1,796,630	+				+1.1
1,796,630	+				+0.0
1,796,631	-				+0.6
1,796,631	-				-1.2
1,796,631	-				-0.9
1,796,631	-				-2.6
1,796,631	-				+0.1
1,796,631	-				-0.3
1,796,648	+				-0.5
1,796,648	+				-2.5
1,796,649	-		DZA65_RS08515	0.10	+1.1
1,796,683	+		DZA65_RS08515	0.13	-0.9
1,796,683	+		DZA65_RS08515	0.13	-1.6
1,796,683	+		DZA65_RS08515	0.13	+3.4
1,796,684	-		DZA65_RS08515	0.13	-1.4
1,796,768	+		DZA65_RS08515	0.21	+0.6
1,796,769	-		DZA65_RS08515	0.21	-0.9
1,796,769	-		DZA65_RS08515	0.21	-0.2
1,796,769	-		DZA65_RS08515	0.21	-1.7
1,796,769	-		DZA65_RS08515	0.21	-0.5
1,796,830	+		DZA65_RS08515	0.26	-1.2
1,796,834	+		DZA65_RS08515	0.27	-2.5
1,796,834	+		DZA65_RS08515	0.27	-1.1
1,796,835	-		DZA65_RS08515	0.27	-1.2
1,796,896	+		DZA65_RS08515	0.32	+0.1
1,796,897	-		DZA65_RS08515	0.32	-1.4
1,796,947	+				+2.7
1,797,347	-		DZA65_RS08515	0.73	-0.5