Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07365

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,533,209	+		DZA65_RS07355	0.52	+0.7
1,533,209	+		DZA65_RS07355	0.52	-0.4
1,533,209	+		DZA65_RS07355	0.52	-1.1
1,533,209	+		DZA65_RS07355	0.52	-1.1
1,533,209	+		DZA65_RS07355	0.52	-0.3
1,533,210	-		DZA65_RS07355	0.52	-0.6
1,533,210	-		DZA65_RS07355	0.52	+1.4
1,533,210	-		DZA65_RS07355	0.52	+0.0
1,533,213	+		DZA65_RS07355	0.53	+0.2
1,533,213	+		DZA65_RS07355	0.53	+1.1
1,533,213	+		DZA65_RS07355	0.53	-0.4
1,533,214	-		DZA65_RS07355	0.53	+1.7
1,533,214	-		DZA65_RS07355	0.53	-1.6
1,533,214	-		DZA65_RS07355	0.53	+1.2
1,533,214	-		DZA65_RS07355	0.53	+0.2
1,533,214	-		DZA65_RS07355	0.53	+3.8
1,533,324	+				+0.5
1,533,324	+		DZA65_RS07355	0.81	-0.2
1,533,324	+		DZA65_RS07355	0.81	+1.2
1,533,335	+		DZA65_RS07355	0.84	-0.0
1,533,336	-		DZA65_RS07355	0.84	-0.6
1,533,424	+				+0.6
1,533,424	+				+0.1
1,533,425	-				-0.8
1,533,425	-				+5.5
1,533,448	-				+2.8
1,533,462	-				-1.5
1,533,481	+				-2.0
1,533,481	+				-0.8
1,533,524	+				-1.6
1,533,536	-		DZA65_RS07360	0.11	+0.9
1,533,536	-		DZA65_RS07360	0.11	+1.0
1,533,609	+		DZA65_RS07360	0.22	-1.8
1,533,610	-		DZA65_RS07360	0.22	+0.2
1,533,610	-		DZA65_RS07360	0.22	-0.7
1,533,664	+		DZA65_RS07360	0.30	-1.6
1,533,665	-		DZA65_RS07360	0.30	-1.5
1,533,665	-		DZA65_RS07360	0.30	+1.2
1,533,665	-		DZA65_RS07360	0.30	-1.3
1,533,665	-		DZA65_RS07360	0.30	+2.8
1,533,679	-		DZA65_RS07360	0.32	-0.4
1,533,762	+		DZA65_RS07360	0.44	+0.0
1,533,762	+		DZA65_RS07360	0.44	-0.8
1,533,762	+		DZA65_RS07360	0.44	-0.4
1,533,762	+				+1.9
1,533,762	+		DZA65_RS07360	0.44	-0.4
1,533,762	+		DZA65_RS07360	0.44	+0.2
1,533,763	-		DZA65_RS07360	0.44	-2.4
1,533,763	-		DZA65_RS07360	0.44	-0.1
1,533,911	+		DZA65_RS07360	0.66	-1.6
1,533,911	+		DZA65_RS07360	0.66	+1.7
1,533,912	-		DZA65_RS07360	0.66	+0.6
1,533,954	+		DZA65_RS07360	0.72	+1.2
1,534,009	-		DZA65_RS07360	0.80	+0.1
1,534,119	+				-0.4
1,534,119	+				+1.8
1,534,125	+				+0.0
1,534,125	+				+1.7
1,534,125	+				+6.7
1,534,125	+				+0.2
1,534,125	+				-0.5
1,534,126	-				+0.2
1,534,126	-				-2.2
1,534,126	-				+0.2
1,534,126	-				+0.8
1,534,126	-				-1.0
1,534,131	+				-1.6
1,534,157	+				+0.8
1,534,158	-				+1.7
1,534,394	+		DZA65_RS07365	0.28	+2.4
1,534,395	-		DZA65_RS07365	0.28	-0.8
1,534,395	-		DZA65_RS07365	0.28	-1.4
1,534,421	+		DZA65_RS07365	0.32	-0.2
1,534,432	-		DZA65_RS07365	0.33	+0.5
1,534,432	-		DZA65_RS07365	0.33	-2.8
1,534,448	+		DZA65_RS07365	0.35	-1.6
1,534,448	+		DZA65_RS07365	0.35	-0.1
1,534,448	+		DZA65_RS07365	0.35	-0.7
1,534,470	+		DZA65_RS07365	0.38	-0.2
1,534,470	+		DZA65_RS07365	0.38	+1.5
1,534,471	-		DZA65_RS07365	0.38	-0.4
1,534,471	-		DZA65_RS07365	0.38	+2.8
1,534,471	-		DZA65_RS07365	0.38	+1.8
1,534,492	+		DZA65_RS07365	0.41	-0.4
1,534,492	+		DZA65_RS07365	0.41	-2.4
1,534,492	+		DZA65_RS07365	0.41	+1.8
1,534,492	+		DZA65_RS07365	0.41	+2.8
1,534,493	-		DZA65_RS07365	0.41	+0.2
1,534,493	-		DZA65_RS07365	0.41	-0.7
1,534,525	+		DZA65_RS07365	0.45	+5.1
1,534,526	-		DZA65_RS07365	0.45	-1.5
1,534,606	+		DZA65_RS07365	0.56	-1.2
1,534,606	+		DZA65_RS07365	0.56	-0.4
1,534,607	-		DZA65_RS07365	0.56	+1.2
1,534,607	-		DZA65_RS07365	0.56	-1.6
1,534,607	-		DZA65_RS07365	0.56	+0.9
1,534,737	+		DZA65_RS07365	0.73	+0.5
1,534,738	-		DZA65_RS07365	0.73	-0.8
1,534,839	+		DZA65_RS07365	0.87	-0.1
1,534,840	-		DZA65_RS07365	0.87	-0.4
1,534,856	+		DZA65_RS07365	0.89	-2.1
1,534,856	+		DZA65_RS07365	0.89	+2.2
1,534,856	+		DZA65_RS07365	0.89	-1.6
1,534,856	+		DZA65_RS07365	0.89	-1.0
1,534,856	+		DZA65_RS07365	0.89	+0.2
1,534,856	+		DZA65_RS07365	0.89	+0.1
1,534,856	+		DZA65_RS07365	0.89	-0.3
1,534,856	+		DZA65_RS07365	0.89	-1.1
1,534,857	-		DZA65_RS07365	0.89	+0.8
1,534,857	-		DZA65_RS07365	0.89	-1.1
1,534,857	-		DZA65_RS07365	0.89	-0.5
1,534,857	-		DZA65_RS07365	0.89	-0.3
1,534,886	-				+1.3
1,534,886	-				-1.9
1,534,918	+				-1.0
1,534,918	+				-0.1
1,534,918	+				-0.6
1,534,918	+				+1.0
1,534,919	-				-0.1
1,534,919	-				+1.5
1,534,958	+				-0.8
1,534,959	-				+0.5
1,534,962	-				-1.1
1,534,962	-				+2.8
1,534,996	+				+2.7
1,534,996	+				-0.6
1,534,997	-				-1.4
1,534,999	+				-1.6
1,534,999	+				+0.6
1,534,999	+				-1.1
1,535,015	+				+2.6
1,535,016	-				+0.5
1,535,016	-				+1.7
1,535,016	-				+2.3
1,535,017	+				+1.2
1,535,018	-				+0.2
1,535,022	+				-1.2
1,535,022	+				-0.2
1,535,023	-				-1.4
1,535,023	-				+1.6
1,535,031	+				-0.2
1,535,056	-				-0.8
1,535,088	+				-1.6
1,535,088	+				-1.0
1,535,088	+				+1.5
1,535,089	-				-0.4
1,535,090	+				-2.5
1,535,090	+				+1.0
1,535,091	-				-0.7
1,535,091	-				+2.4
1,535,105	+				+0.2
1,535,105	+				-1.3
1,535,106	-				-0.1
1,535,186	+				-1.8
1,535,186	+				-3.3
1,535,207	+		DZA65_RS07370	0.12	-2.4
1,535,298	+		DZA65_RS07370	0.22	-0.1
1,535,298	+		DZA65_RS07370	0.22	-1.8
1,535,298	+		DZA65_RS07370	0.22	+2.2
1,535,298	+		DZA65_RS07370	0.22	-0.1
1,535,299	-		DZA65_RS07370	0.22	+1.6
1,535,299	-		DZA65_RS07370	0.22	+2.8
1,535,299	-		DZA65_RS07370	0.22	-1.6
1,535,299	-		DZA65_RS07370	0.22	-1.8
1,535,299	-		DZA65_RS07370	0.22	-0.4
1,535,299	-		DZA65_RS07370	0.22	+0.5
1,535,313	+		DZA65_RS07370	0.24	-1.8
1,535,313	+		DZA65_RS07370	0.24	-0.8
1,535,313	+		DZA65_RS07370	0.24	-2.3
1,535,313	+		DZA65_RS07370	0.24	-0.0
1,535,313	+		DZA65_RS07370	0.24	-1.5
1,535,314	-		DZA65_RS07370	0.24	-1.1
1,535,379	+		DZA65_RS07370	0.31	+1.2
1,535,379	+		DZA65_RS07370	0.31	-1.4
1,535,379	+		DZA65_RS07370	0.31	-0.1
1,535,379	+		DZA65_RS07370	0.31	-0.8
1,535,379	+		DZA65_RS07370	0.31	-0.8
1,535,380	-		DZA65_RS07370	0.31	+1.2
1,535,380	-		DZA65_RS07370	0.31	-1.8
1,535,380	-		DZA65_RS07370	0.31	+0.1
1,535,413	+		DZA65_RS07370	0.35	-3.0
1,535,413	+		DZA65_RS07370	0.35	+0.2
1,535,414	-		DZA65_RS07370	0.35	-0.4
1,535,414	-		DZA65_RS07370	0.35	+1.2
1,535,477	+		DZA65_RS07370	0.42	-0.5
1,535,477	+		DZA65_RS07370	0.42	-1.1
1,535,478	-		DZA65_RS07370	0.42	-1.1
1,535,478	-		DZA65_RS07370	0.42	+2.8
1,535,482	+		DZA65_RS07370	0.42	-0.4
1,535,483	-		DZA65_RS07370	0.43	-0.8
1,535,483	-		DZA65_RS07370	0.43	-0.5
1,535,483	-		DZA65_RS07370	0.43	+1.7
1,535,483	-		DZA65_RS07370	0.43	-0.5
1,535,483	-		DZA65_RS07370	0.43	+2.1
1,535,483	-		DZA65_RS07370	0.43	+2.5
1,535,510	+		DZA65_RS07370	0.46	-0.6
1,535,510	+		DZA65_RS07370	0.46	-1.1
1,535,510	+		DZA65_RS07370	0.46	-0.8
1,535,511	-		DZA65_RS07370	0.46	-1.4
1,535,524	+		DZA65_RS07370	0.47	+3.3
1,535,525	-		DZA65_RS07370	0.47	+0.2
1,535,525	-		DZA65_RS07370	0.47	+0.7
1,535,525	-		DZA65_RS07370	0.47	+2.5
1,535,525	-		DZA65_RS07370	0.47	-1.1
1,535,525	-		DZA65_RS07370	0.47	-0.4
1,535,527	+		DZA65_RS07370	0.47	-1.1
1,535,527	+		DZA65_RS07370	0.47	+0.2
1,535,527	+		DZA65_RS07370	0.47	+1.8
1,535,528	-		DZA65_RS07370	0.48	-0.4
1,535,528	-		DZA65_RS07370	0.48	-1.1
1,535,571	-		DZA65_RS07370	0.52	-1.4
1,535,571	-		DZA65_RS07370	0.52	-1.8
1,535,697	+		DZA65_RS07370	0.66	-2.1
1,535,697	+		DZA65_RS07370	0.66	-0.8
1,535,697	+		DZA65_RS07370	0.66	-1.1
1,535,697	+		DZA65_RS07370	0.66	+5.2
1,535,697	+		DZA65_RS07370	0.66	+3.9
1,535,697	+		DZA65_RS07370	0.66	+2.4
1,535,697	+		DZA65_RS07370	0.66	-1.9
1,535,697	+		DZA65_RS07370	0.66	-1.1
1,535,697	+		DZA65_RS07370	0.66	-1.8
1,535,697	+				-1.1
1,535,697	+		DZA65_RS07370	0.66	-1.1
1,535,697	+		DZA65_RS07370	0.66	-1.4
1,535,698	-		DZA65_RS07370	0.66	-0.4
1,535,698	-		DZA65_RS07370	0.66	-0.7
1,535,698	-		DZA65_RS07370	0.66	-1.0
1,535,698	-		DZA65_RS07370	0.66	-1.1
1,535,698	-		DZA65_RS07370	0.66	-1.4
1,535,698	-		DZA65_RS07370	0.66	+1.2
1,535,698	-		DZA65_RS07370	0.66	+0.5
1,535,698	-		DZA65_RS07370	0.66	-0.1
1,535,698	-		DZA65_RS07370	0.66	-0.8
1,535,698	-		DZA65_RS07370	0.66	-0.4
1,535,698	-		DZA65_RS07370	0.66	+0.3
1,535,698	-		DZA65_RS07370	0.66	+2.3
1,535,734	+		DZA65_RS07370	0.70	-1.5
1,535,802	+		DZA65_RS07370	0.78	-1.6
1,535,802	+		DZA65_RS07370	0.78	-0.0
1,535,816	+		DZA65_RS07370	0.80	-2.7
1,535,817	-		DZA65_RS07370	0.80	+2.2
1,535,890	-		DZA65_RS07370	0.88	+0.4
1,535,919	+				+1.6