Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07015

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07005 and DZA65_RS07010 are separated by 171 nucleotidesDZA65_RS07010 and DZA65_RS07015 overlap by 14 nucleotidesDZA65_RS07015 and DZA65_RS07020 overlap by 1 nucleotides DZA65_RS07005: DZA65_RS07005 - multidrug efflux pump-associated protein, AcrZ family, at 1,451,717 to 1,451,866 _RS07005 DZA65_RS07010: DZA65_RS07010 - molybdate ABC transporter substrate-binding protein, at 1,452,038 to 1,452,823 _RS07010 DZA65_RS07015: DZA65_RS07015 - molybdate ABC transporter permease subunit, at 1,452,810 to 1,453,499 _RS07015 DZA65_RS07020: DZA65_RS07020 - molybdenum ABC transporter ATP-binding protein ModC, at 1,453,499 to 1,454,557 _RS07020 Position (kb) 1452 1453 1454Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1451.811 kb on + strand, within DZA65_RS07005at 1451.811 kb on + strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.812 kb on - strand, within DZA65_RS07005at 1451.864 kb on + strandat 1451.865 kb on - strandat 1451.865 kb on - strandat 1451.925 kb on - strandat 1451.925 kb on - strandat 1451.957 kb on + strandat 1451.957 kb on + strandat 1451.981 kb on + strandat 1451.981 kb on + strandat 1451.982 kb on - strandat 1451.988 kb on + strandat 1451.989 kb on - strandat 1451.992 kb on + strandat 1451.993 kb on - strandat 1452.003 kb on + strandat 1452.011 kb on - strandat 1452.011 kb on - strandat 1452.011 kb on - strandat 1452.056 kb on + strandat 1452.056 kb on + strandat 1452.056 kb on + strandat 1452.057 kb on - strandat 1452.057 kb on - strandat 1452.057 kb on - strandat 1452.088 kb on + strandat 1452.101 kb on - strandat 1452.123 kb on + strand, within DZA65_RS07010at 1452.124 kb on - strand, within DZA65_RS07010at 1452.215 kb on + strandat 1452.302 kb on + strand, within DZA65_RS07010at 1452.302 kb on + strand, within DZA65_RS07010at 1452.302 kb on + strand, within DZA65_RS07010at 1452.302 kb on + strand, within DZA65_RS07010at 1452.303 kb on - strand, within DZA65_RS07010at 1452.303 kb on - strandat 1452.303 kb on - strand, within DZA65_RS07010at 1452.303 kb on - strandat 1452.303 kb on - strand, within DZA65_RS07010at 1452.341 kb on + strand, within DZA65_RS07010at 1452.342 kb on - strand, within DZA65_RS07010at 1452.415 kb on + strand, within DZA65_RS07010at 1452.491 kb on + strand, within DZA65_RS07010at 1452.491 kb on + strand, within DZA65_RS07010at 1452.491 kb on + strand, within DZA65_RS07010at 1452.491 kb on + strand, within DZA65_RS07010at 1452.491 kb on + strand, within DZA65_RS07010at 1452.491 kb on + strand, within DZA65_RS07010at 1452.492 kb on - strand, within DZA65_RS07010at 1452.492 kb on - strand, within DZA65_RS07010at 1452.492 kb on - strand, within DZA65_RS07010at 1452.492 kb on - strand, within DZA65_RS07010at 1452.585 kb on + strand, within DZA65_RS07010at 1452.586 kb on - strand, within DZA65_RS07010at 1452.676 kb on + strand, within DZA65_RS07010at 1452.676 kb on + strand, within DZA65_RS07010at 1452.706 kb on + strand, within DZA65_RS07010at 1452.752 kb on + strandat 1452.785 kb on - strandat 1452.791 kb on + strandat 1452.791 kb on + strandat 1452.792 kb on - strandat 1452.826 kb on - strandat 1452.855 kb on - strandat 1452.855 kb on - strandat 1452.988 kb on + strand, within DZA65_RS07015at 1453.012 kb on + strandat 1453.013 kb on - strand, within DZA65_RS07015at 1453.051 kb on - strand, within DZA65_RS07015at 1453.079 kb on + strand, within DZA65_RS07015at 1453.223 kb on + strand, within DZA65_RS07015at 1453.224 kb on - strand, within DZA65_RS07015at 1453.253 kb on + strand, within DZA65_RS07015at 1453.253 kb on + strand, within DZA65_RS07015at 1453.253 kb on + strand, within DZA65_RS07015at 1453.256 kb on + strand, within DZA65_RS07015at 1453.256 kb on + strand, within DZA65_RS07015at 1453.256 kb on + strand, within DZA65_RS07015at 1453.256 kb on + strand, within DZA65_RS07015at 1453.270 kb on + strand, within DZA65_RS07015at 1453.270 kb on + strand, within DZA65_RS07015at 1453.271 kb on - strand, within DZA65_RS07015at 1453.271 kb on - strand, within DZA65_RS07015at 1453.365 kb on + strandat 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.365 kb on + strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strandat 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.366 kb on - strand, within DZA65_RS07015at 1453.367 kb on + strand, within DZA65_RS07015at 1453.367 kb on + strand, within DZA65_RS07015at 1453.367 kb on + strand, within DZA65_RS07015at 1453.367 kb on + strand, within DZA65_RS07015at 1453.368 kb on - strand, within DZA65_RS07015at 1453.368 kb on - strand, within DZA65_RS07015at 1453.368 kb on - strand, within DZA65_RS07015at 1453.368 kb on - strand, within DZA65_RS07015at 1453.516 kb on + strandat 1453.517 kb on - strandat 1453.736 kb on + strand, within DZA65_RS07020at 1453.758 kb on + strand, within DZA65_RS07020at 1453.759 kb on - strand, within DZA65_RS07020at 1453.864 kb on + strand, within DZA65_RS07020at 1453.865 kb on - strand, within DZA65_RS07020at 1453.865 kb on - strand, within DZA65_RS07020at 1453.980 kb on + strand, within DZA65_RS07020at 1454.048 kb on + strand, within DZA65_RS07020at 1454.048 kb on + strand, within DZA65_RS07020at 1454.048 kb on + strand, within DZA65_RS07020at 1454.048 kb on + strand, within DZA65_RS07020at 1454.049 kb on - strand, within DZA65_RS07020at 1454.049 kb on - strand, within DZA65_RS07020at 1454.049 kb on - strand, within DZA65_RS07020at 1454.049 kb on - strand, within DZA65_RS07020at 1454.049 kb on - strand, within DZA65_RS07020at 1454.077 kb on - strand, within DZA65_RS07020at 1454.077 kb on - strand, within DZA65_RS07020at 1454.198 kb on - strand, within DZA65_RS07020at 1454.234 kb on + strand, within DZA65_RS07020at 1454.235 kb on - strand, within DZA65_RS07020at 1454.470 kb on + strandat 1454.470 kb on + strandat 1454.471 kb on - strandat 1454.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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1,451,811 + DZA65_RS07005 0.63 -1.1
1,451,811 + DZA65_RS07005 0.63 -0.8
1,451,812 - DZA65_RS07005 0.63 -1.6
1,451,812 - DZA65_RS07005 0.63 -1.1
1,451,812 - DZA65_RS07005 0.63 -2.9
1,451,812 - DZA65_RS07005 0.63 -1.1
1,451,812 - DZA65_RS07005 0.63 -0.8
1,451,812 - DZA65_RS07005 0.63 +0.0
1,451,812 - DZA65_RS07005 0.63 -0.2
1,451,812 - DZA65_RS07005 0.63 +0.4
1,451,864 + +0.4
1,451,865 - +0.2
1,451,865 - +2.2
1,451,925 - +0.6
1,451,925 - -0.8
1,451,957 + -1.0
1,451,957 + -3.5
1,451,981 + +2.6
1,451,981 + +1.6
1,451,982 - -1.9
1,451,988 + +0.9
1,451,989 - +0.0
1,451,992 + +0.5
1,451,993 - -1.6
1,452,003 + -1.4
1,452,011 - -0.4
1,452,011 - +0.2
1,452,011 - -1.1
1,452,056 + -1.1
1,452,056 + -0.2
1,452,056 + -0.8
1,452,057 - -0.4
1,452,057 - -0.4
1,452,057 - +0.6
1,452,088 + +0.0
1,452,101 - -1.0
1,452,123 + DZA65_RS07010 0.11 -1.4
1,452,124 - DZA65_RS07010 0.11 +1.2
1,452,215 + -2.1
1,452,302 + DZA65_RS07010 0.34 +0.3
1,452,302 + DZA65_RS07010 0.34 -0.1
1,452,302 + DZA65_RS07010 0.34 -1.1
1,452,302 + DZA65_RS07010 0.34 -2.1
1,452,303 - DZA65_RS07010 0.34 -0.8
1,452,303 - -1.1
1,452,303 - DZA65_RS07010 0.34 -2.6
1,452,303 - -1.1
1,452,303 - DZA65_RS07010 0.34 +0.2
1,452,341 + DZA65_RS07010 0.39 +1.2
1,452,342 - DZA65_RS07010 0.39 -0.8
1,452,415 + DZA65_RS07010 0.48 +0.9
1,452,491 + DZA65_RS07010 0.58 -1.8
1,452,491 + DZA65_RS07010 0.58 -0.9
1,452,491 + DZA65_RS07010 0.58 +0.2
1,452,491 + DZA65_RS07010 0.58 -0.4
1,452,491 + DZA65_RS07010 0.58 +1.5
1,452,491 + DZA65_RS07010 0.58 -1.5
1,452,492 - DZA65_RS07010 0.58 +1.0
1,452,492 - DZA65_RS07010 0.58 +2.0
1,452,492 - DZA65_RS07010 0.58 -1.8
1,452,492 - DZA65_RS07010 0.58 +1.4
1,452,585 + DZA65_RS07010 0.70 -0.4
1,452,586 - DZA65_RS07010 0.70 -2.1
1,452,676 + DZA65_RS07010 0.81 +0.2
1,452,676 + DZA65_RS07010 0.81 -3.4
1,452,706 + DZA65_RS07010 0.85 +0.0
1,452,752 + +0.8
1,452,785 - -0.1
1,452,791 + -1.8
1,452,791 + -2.4
1,452,792 - -2.0
1,452,826 - -1.0
1,452,855 - +0.2
1,452,855 - +1.2
1,452,988 + DZA65_RS07015 0.26 -0.4
1,453,012 + -0.4
1,453,013 - DZA65_RS07015 0.29 -1.4
1,453,051 - DZA65_RS07015 0.35 -1.8
1,453,079 + DZA65_RS07015 0.39 -0.1
1,453,223 + DZA65_RS07015 0.60 +0.9
1,453,224 - DZA65_RS07015 0.60 +0.8
1,453,253 + DZA65_RS07015 0.64 -2.4
1,453,253 + DZA65_RS07015 0.64 -2.5
1,453,253 + DZA65_RS07015 0.64 +0.7
1,453,256 + DZA65_RS07015 0.65 -2.0
1,453,256 + DZA65_RS07015 0.65 -2.0
1,453,256 + DZA65_RS07015 0.65 -1.4
1,453,256 + DZA65_RS07015 0.65 -0.8
1,453,270 + DZA65_RS07015 0.67 +2.4
1,453,270 + DZA65_RS07015 0.67 -2.0
1,453,271 - DZA65_RS07015 0.67 -0.8
1,453,271 - DZA65_RS07015 0.67 -0.5
1,453,365 + +0.2
1,453,365 + DZA65_RS07015 0.80 -0.4
1,453,365 + DZA65_RS07015 0.80 +0.1
1,453,365 + DZA65_RS07015 0.80 -1.1
1,453,365 + DZA65_RS07015 0.80 -0.8
1,453,365 + DZA65_RS07015 0.80 +0.8
1,453,365 + DZA65_RS07015 0.80 -0.8
1,453,365 + DZA65_RS07015 0.80 -2.0
1,453,365 + DZA65_RS07015 0.80 +1.8
1,453,365 + DZA65_RS07015 0.80 +0.6
1,453,365 + DZA65_RS07015 0.80 -3.2
1,453,365 + DZA65_RS07015 0.80 -0.2
1,453,365 + DZA65_RS07015 0.80 -1.1
1,453,366 - DZA65_RS07015 0.81 -1.6
1,453,366 - DZA65_RS07015 0.81 -1.4
1,453,366 - DZA65_RS07015 0.81 -2.4
1,453,366 - DZA65_RS07015 0.81 -2.1
1,453,366 - DZA65_RS07015 0.81 -0.8
1,453,366 - -1.4
1,453,366 - DZA65_RS07015 0.81 -1.6
1,453,366 - DZA65_RS07015 0.81 +0.4
1,453,366 - DZA65_RS07015 0.81 -0.8
1,453,366 - DZA65_RS07015 0.81 -0.8
1,453,366 - DZA65_RS07015 0.81 -1.1
1,453,366 - DZA65_RS07015 0.81 -1.4
1,453,366 - DZA65_RS07015 0.81 +0.2
1,453,366 - DZA65_RS07015 0.81 +0.2
1,453,366 - DZA65_RS07015 0.81 -1.2
1,453,366 - DZA65_RS07015 0.81 -0.8
1,453,367 + DZA65_RS07015 0.81 -1.4
1,453,367 + DZA65_RS07015 0.81 -2.2
1,453,367 + DZA65_RS07015 0.81 -0.8
1,453,367 + DZA65_RS07015 0.81 -1.1
1,453,368 - DZA65_RS07015 0.81 -1.1
1,453,368 - DZA65_RS07015 0.81 -1.1
1,453,368 - DZA65_RS07015 0.81 +1.0
1,453,368 - DZA65_RS07015 0.81 -1.4
1,453,516 + -1.4
1,453,517 - -2.1
1,453,736 + DZA65_RS07020 0.22 -0.4
1,453,758 + DZA65_RS07020 0.24 -2.3
1,453,759 - DZA65_RS07020 0.25 +0.4
1,453,864 + DZA65_RS07020 0.34 +0.4
1,453,865 - DZA65_RS07020 0.35 -0.1
1,453,865 - DZA65_RS07020 0.35 -1.4
1,453,980 + DZA65_RS07020 0.45 -2.5
1,454,048 + DZA65_RS07020 0.52 -1.1
1,454,048 + DZA65_RS07020 0.52 +0.0
1,454,048 + DZA65_RS07020 0.52 +1.9
1,454,048 + DZA65_RS07020 0.52 -0.9
1,454,049 - DZA65_RS07020 0.52 -1.8
1,454,049 - DZA65_RS07020 0.52 -1.7
1,454,049 - DZA65_RS07020 0.52 +0.6
1,454,049 - DZA65_RS07020 0.52 -1.0
1,454,049 - DZA65_RS07020 0.52 -1.1
1,454,077 - DZA65_RS07020 0.55 -2.3
1,454,077 - DZA65_RS07020 0.55 -1.0
1,454,198 - DZA65_RS07020 0.66 +1.6
1,454,234 + DZA65_RS07020 0.69 -0.1
1,454,235 - DZA65_RS07020 0.69 -0.8
1,454,470 + -1.4
1,454,470 + +0.4
1,454,471 - +2.9
1,454,471 - -1.7

Or see this region's nucleotide sequence