Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06960

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,439,782	+		DZA65_RS06950	0.19	+0.2
1,439,783	-		DZA65_RS06950	0.20	-0.2
1,439,783	-		DZA65_RS06950	0.20	-0.4
1,439,840	+		DZA65_RS06950	0.27	-0.1
1,439,841	-		DZA65_RS06950	0.28	-1.0
1,439,841	-		DZA65_RS06950	0.28	+0.2
1,439,842	+		DZA65_RS06950	0.28	+0.2
1,439,842	+		DZA65_RS06950	0.28	+1.4
1,439,842	+		DZA65_RS06950	0.28	-0.3
1,439,843	-		DZA65_RS06950	0.28	-1.8
1,439,843	-		DZA65_RS06950	0.28	+0.2
1,439,843	-		DZA65_RS06950	0.28	+0.2
1,439,888	-		DZA65_RS06950	0.34	-0.8
1,439,896	+		DZA65_RS06950	0.35	-2.0
1,439,896	+		DZA65_RS06950	0.35	-1.1
1,439,897	-		DZA65_RS06950	0.35	+2.5
1,439,897	-		DZA65_RS06950	0.35	-0.8
1,439,897	-		DZA65_RS06950	0.35	-1.5
1,440,016	+		DZA65_RS06950	0.52	-1.1
1,440,016	+		DZA65_RS06950	0.52	-0.1
1,440,017	-		DZA65_RS06950	0.52	+0.5
1,440,017	-		DZA65_RS06950	0.52	-0.4
1,440,017	-		DZA65_RS06950	0.52	-1.4
1,440,017	-		DZA65_RS06950	0.52	-1.4
1,440,143	+		DZA65_RS06950	0.69	-1.1
1,440,144	-		DZA65_RS06950	0.69	+1.4
1,440,144	-		DZA65_RS06950	0.69	-0.6
1,440,177	+		DZA65_RS06950	0.74	+1.2
1,440,177	+		DZA65_RS06950	0.74	-1.1
1,440,177	+				-0.4
1,440,177	+		DZA65_RS06950	0.74	-2.8
1,440,178	-		DZA65_RS06950	0.74	-0.8
1,440,178	-		DZA65_RS06950	0.74	+0.2
1,440,178	-				-0.4
1,440,181	+		DZA65_RS06950	0.74	-0.4
1,440,181	+		DZA65_RS06950	0.74	+0.2
1,440,181	+		DZA65_RS06950	0.74	-0.8
1,440,182	-		DZA65_RS06950	0.75	-1.1
1,440,182	-		DZA65_RS06950	0.75	-0.4
1,440,182	-		DZA65_RS06950	0.75	+3.7
1,440,182	-		DZA65_RS06950	0.75	-2.8
1,440,182	-		DZA65_RS06950	0.75	-2.0
1,440,182	-		DZA65_RS06950	0.75	-1.4
1,440,220	-		DZA65_RS06950	0.80	+2.7
1,440,253	+		DZA65_RS06950	0.84	-0.4
1,440,253	+		DZA65_RS06950	0.84	-1.5
1,440,253	+		DZA65_RS06950	0.84	-1.6
1,440,253	+		DZA65_RS06950	0.84	-1.1
1,440,254	-		DZA65_RS06950	0.84	-0.8
1,440,254	-		DZA65_RS06950	0.84	-1.5
1,440,254	-		DZA65_RS06950	0.84	-1.6
1,440,271	+		DZA65_RS06950	0.87	-0.1
1,440,271	+		DZA65_RS06950	0.87	+0.9
1,440,271	+		DZA65_RS06950	0.87	-2.0
1,440,271	+		DZA65_RS06950	0.87	-0.8
1,440,272	-		DZA65_RS06950	0.87	+1.8
1,440,272	-		DZA65_RS06950	0.87	+1.3
1,440,272	-		DZA65_RS06950	0.87	-2.7
1,440,272	-		DZA65_RS06950	0.87	-0.8
1,440,272	-		DZA65_RS06950	0.87	-0.8
1,440,362	+				-1.8
1,440,363	-				-0.5
1,440,363	-				+1.4
1,440,364	+				-0.4
1,440,364	+				-0.7
1,440,365	-				-1.4
1,440,410	-				-0.2
1,440,424	+				-0.8
1,440,424	+				+1.5
1,440,424	+				+4.3
1,440,424	+				-0.8
1,440,425	-				-1.1
1,440,425	-				-1.1
1,440,425	-				+2.3
1,440,425	-				-0.8
1,440,432	+				-1.8
1,440,432	+				-0.3
1,440,433	-				+0.2
1,440,433	-				-0.4
1,440,451	+				-0.4
1,440,451	+				-1.4
1,440,466	+				-1.1
1,440,519	+				-1.1
1,440,520	-				+0.5
1,440,520	-				+1.9
1,440,646	+				-2.6
1,440,646	+				-0.8
1,440,646	+				+1.4
1,440,646	+				-2.4
1,440,646	+				+0.6
1,440,646	+				+2.2
1,440,651	-				+0.4
1,440,675	+				-0.1
1,440,675	+				-0.4
1,440,675	+				-2.4
1,440,675	+				+2.6
1,440,676	-				+2.5
1,440,676	-				+0.9
1,440,677	+				-3.1
1,440,677	+				-0.2
1,440,677	+				+3.2
1,440,678	-				+2.1
1,440,678	-				-2.8
1,440,694	+				+0.6
1,440,694	+				+2.6
1,440,694	+				-1.2
1,440,695	-				+0.5
1,440,728	-				+0.6
1,440,781	-				+1.2
1,440,788	-				+2.6
1,440,788	-				-2.1
1,440,819	+				-0.4
1,440,819	+				+0.0
1,440,887	+		DZA65_RS06960	0.10	+0.5
1,440,887	+		DZA65_RS06960	0.10	+0.2
1,440,888	-		DZA65_RS06960	0.10	-0.7
1,440,888	-		DZA65_RS06960	0.10	-1.6
1,440,888	-		DZA65_RS06960	0.10	+0.6
1,440,888	-		DZA65_RS06960	0.10	+0.2
1,440,891	+		DZA65_RS06960	0.10	-0.4
1,440,892	-		DZA65_RS06960	0.11	-0.0
1,440,892	-		DZA65_RS06960	0.11	-0.9
1,440,892	-		DZA65_RS06960	0.11	-1.4
1,440,979	-		DZA65_RS06960	0.19	-1.1
1,440,994	+		DZA65_RS06960	0.20	-0.6
1,440,995	-		DZA65_RS06960	0.20	+2.5
1,441,060	+		DZA65_RS06960	0.26	-0.2
1,441,061	-		DZA65_RS06960	0.27	-2.2
1,441,061	-		DZA65_RS06960	0.27	+2.3
1,441,077	+		DZA65_RS06960	0.28	-1.4
1,441,234	+		DZA65_RS06960	0.43	-0.8
1,441,234	+		DZA65_RS06960	0.43	+0.5
1,441,234	+		DZA65_RS06960	0.43	-0.8
1,441,235	-		DZA65_RS06960	0.43	-0.4
1,441,235	-		DZA65_RS06960	0.43	+0.4
1,441,275	+		DZA65_RS06960	0.47	-0.2
1,441,276	-		DZA65_RS06960	0.47	+0.5
1,441,278	+		DZA65_RS06960	0.47	+0.6
1,441,278	+		DZA65_RS06960	0.47	+0.2
1,441,278	+		DZA65_RS06960	0.47	-0.6
1,441,473	+		DZA65_RS06960	0.66	-0.8
1,441,473	+		DZA65_RS06960	0.66	+0.2
1,441,474	-		DZA65_RS06960	0.66	-1.6
1,441,474	-		DZA65_RS06960	0.66	-1.1
1,441,474	-		DZA65_RS06960	0.66	-1.0
1,441,502	-		DZA65_RS06960	0.68	-1.8
1,441,502	-		DZA65_RS06960	0.68	-2.7
1,441,502	-		DZA65_RS06960	0.68	-2.0
1,441,622	+		DZA65_RS06960	0.80	-1.0
1,441,622	+		DZA65_RS06960	0.80	-2.0
1,441,622	+		DZA65_RS06960	0.80	+0.5
1,441,623	-		DZA65_RS06960	0.80	-2.1
1,441,623	-		DZA65_RS06960	0.80	-1.6
1,441,623	-		DZA65_RS06960	0.80	-0.5
1,441,647	+		DZA65_RS06960	0.82	+0.4
1,441,736	+				+0.3
1,441,736	+				-1.4
1,441,737	-				+0.9
1,441,739	-				-1.1
1,441,897	-				+3.0
1,441,898	+				-0.8
1,441,898	+				+0.2
1,441,899	-				+1.4
1,441,899	-				-0.4
1,441,899	-				-0.8
1,441,908	-				-1.4
1,442,019	+				-1.1
1,442,021	+				+0.2
1,442,021	+				-1.6
1,442,021	+				-2.0
1,442,021	+				+1.8
1,442,021	+				+1.4
1,442,021	+				-1.4
1,442,021	+				-2.0
1,442,021	+				-0.4
1,442,021	+				+0.2
1,442,021	+				-1.6
1,442,027	-				-0.7
1,442,035	+				+1.1
1,442,035	+				+1.8
1,442,036	-				-0.7
1,442,036	-				-2.1
1,442,803	-				+1.7
1,442,803	-				+1.2
1,442,805	-				+0.5
1,442,805	-				-0.5
1,442,805	-				+0.7