Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06270

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,302,187	+				-1.4
1,302,187	+				-1.0
1,302,187	+				-0.3
1,302,188	-				+0.7
1,302,249	-				+0.4
1,302,266	+				-0.4
1,302,267	-				+0.0
1,302,267	-				+1.8
1,302,267	-				-0.5
1,302,329	-				+0.2
1,302,367	+				-1.1
1,302,367	+				-0.7
1,302,367	+				-0.8
1,302,367	+				-1.7
1,302,367	+				+0.0
1,302,367	+				+0.8
1,302,367	+				+2.2
1,302,367	+				-1.3
1,302,367	+				+2.9
1,302,367	+				-2.0
1,302,367	+				-1.3
1,302,367	+				-1.4
1,302,367	+				+2.7
1,302,367	+				-1.3
1,302,368	-				-1.3
1,302,368	-				-2.3
1,302,368	-				+0.0
1,302,368	-				-1.0
1,302,368	-				+3.2
1,302,368	-				-0.6
1,302,368	-				-0.7
1,302,368	-				+0.5
1,302,368	-				-1.3
1,302,368	-				-0.3
1,302,368	-				+0.8
1,302,503	+				-1.0
1,302,503	+				-1.3
1,302,503	+				-2.3
1,302,503	+				-1.3
1,302,504	-				-1.1
1,302,504	-				+4.7
1,302,505	+				-0.4
1,302,505	+				-0.5
1,302,505	+				-1.5
1,302,505	+				-2.0
1,302,505	+				+0.3
1,302,505	+				-1.5
1,302,506	-				+1.0
1,302,506	-				-0.1
1,302,506	-				+1.0
1,302,515	-				+0.9
1,302,543	-				-1.7
1,302,659	+		DZA65_RS06270	0.12	+3.3
1,302,659	+		DZA65_RS06270	0.12	+0.6
1,302,660	-		DZA65_RS06270	0.12	+1.3
1,302,660	-		DZA65_RS06270	0.12	+0.3
1,302,660	-		DZA65_RS06270	0.12	-0.3
1,302,734	+		DZA65_RS06270	0.15	-1.7
1,302,734	+		DZA65_RS06270	0.15	-0.7
1,302,734	+		DZA65_RS06270	0.15	-1.7
1,302,734	+		DZA65_RS06270	0.15	+1.4
1,302,742	+		DZA65_RS06270	0.15	+0.1
1,302,742	+		DZA65_RS06270	0.15	-0.0
1,302,743	-		DZA65_RS06270	0.15	-0.6
1,302,942	-		DZA65_RS06270	0.22	+1.3
1,302,942	-		DZA65_RS06270	0.22	-2.6
1,302,958	-		DZA65_RS06270	0.22	+1.7
1,302,958	-		DZA65_RS06270	0.22	+1.2
1,302,958	-		DZA65_RS06270	0.22	-1.5
1,302,959	+		DZA65_RS06270	0.23	-1.7
1,302,959	+		DZA65_RS06270	0.23	-2.6
1,302,959	+		DZA65_RS06270	0.23	+0.9
1,302,959	+		DZA65_RS06270	0.23	+1.1
1,302,959	+		DZA65_RS06270	0.23	-1.3
1,302,959	+		DZA65_RS06270	0.23	+3.3
1,302,959	+		DZA65_RS06270	0.23	+0.0
1,302,960	-		DZA65_RS06270	0.23	+0.3
1,302,960	-		DZA65_RS06270	0.23	-0.3
1,302,960	-		DZA65_RS06270	0.23	-2.7
1,302,960	-		DZA65_RS06270	0.23	-1.2
1,302,960	-				-1.5
1,302,960	-		DZA65_RS06270	0.23	-1.0
1,302,960	-		DZA65_RS06270	0.23	-0.3
1,303,021	+		DZA65_RS06270	0.25	-1.5
1,303,021	+		DZA65_RS06270	0.25	+0.6
1,303,021	+		DZA65_RS06270	0.25	-0.8
1,303,021	+		DZA65_RS06270	0.25	-1.3
1,303,021	+		DZA65_RS06270	0.25	-0.7
1,303,021	+		DZA65_RS06270	0.25	+1.9
1,303,021	+		DZA65_RS06270	0.25	-2.0
1,303,022	-		DZA65_RS06270	0.25	+2.6
1,303,022	-		DZA65_RS06270	0.25	+0.6
1,303,022	-		DZA65_RS06270	0.25	-0.7
1,303,022	-		DZA65_RS06270	0.25	+0.9
1,303,022	-		DZA65_RS06270	0.25	-1.3
1,303,022	-		DZA65_RS06270	0.25	+0.3
1,303,022	-		DZA65_RS06270	0.25	-2.0
1,303,056	+		DZA65_RS06270	0.26	-1.8
1,303,142	+		DZA65_RS06270	0.29	-0.3
1,303,142	+		DZA65_RS06270	0.29	+1.7
1,303,142	+		DZA65_RS06270	0.29	+1.7
1,303,142	+		DZA65_RS06270	0.29	-1.7
1,303,142	+		DZA65_RS06270	0.29	+2.6
1,303,142	+		DZA65_RS06270	0.29	-2.3
1,303,142	+		DZA65_RS06270	0.29	-1.1
1,303,143	-		DZA65_RS06270	0.29	+0.3
1,303,143	-		DZA65_RS06270	0.29	-1.5
1,303,143	-		DZA65_RS06270	0.29	-0.7
1,303,143	-		DZA65_RS06270	0.29	-2.7
1,303,143	-		DZA65_RS06270	0.29	-1.8
1,303,143	-		DZA65_RS06270	0.29	-1.3
1,303,199	-		DZA65_RS06270	0.31	-0.3
1,303,199	-		DZA65_RS06270	0.31	-1.3
1,303,217	+		DZA65_RS06270	0.32	+2.3
1,303,217	+		DZA65_RS06270	0.32	-1.0
1,303,218	-				-0.7
1,303,218	-		DZA65_RS06270	0.32	+0.2
1,303,218	-		DZA65_RS06270	0.32	-1.6
1,303,256	-		DZA65_RS06270	0.33	-0.9
1,303,256	-		DZA65_RS06270	0.33	+2.3
1,303,297	+		DZA65_RS06270	0.34	-1.5
1,303,298	-		DZA65_RS06270	0.34	+4.1
1,303,456	+		DZA65_RS06270	0.40	-2.0
1,303,457	-		DZA65_RS06270	0.40	-1.0
1,303,480	+		DZA65_RS06270	0.41	-1.8
1,303,480	+		DZA65_RS06270	0.41	+1.7
1,303,480	+		DZA65_RS06270	0.41	-1.8
1,303,480	+		DZA65_RS06270	0.41	+0.7
1,303,480	+		DZA65_RS06270	0.41	-0.3
1,303,480	+		DZA65_RS06270	0.41	-0.3
1,303,481	-		DZA65_RS06270	0.41	+0.3
1,303,481	-		DZA65_RS06270	0.41	-0.7
1,303,481	-		DZA65_RS06270	0.41	+0.6
1,303,484	+		DZA65_RS06270	0.41	+0.8
1,303,484	+		DZA65_RS06270	0.41	+0.7
1,303,484	+		DZA65_RS06270	0.41	-0.1
1,303,485	-		DZA65_RS06270	0.41	+0.3
1,303,485	-		DZA65_RS06270	0.41	-0.3
1,303,502	+		DZA65_RS06270	0.41	-1.0
1,303,502	+		DZA65_RS06270	0.41	-1.0
1,303,502	+		DZA65_RS06270	0.41	+1.1
1,303,502	+		DZA65_RS06270	0.41	-1.0
1,303,502	+		DZA65_RS06270	0.41	+4.3
1,303,502	+		DZA65_RS06270	0.41	+0.4
1,303,502	+		DZA65_RS06270	0.41	+2.3
1,303,502	+		DZA65_RS06270	0.41	+1.3
1,303,503	-		DZA65_RS06270	0.42	-0.3
1,303,503	-		DZA65_RS06270	0.42	-1.7
1,303,503	-		DZA65_RS06270	0.42	+1.2
1,303,503	-		DZA65_RS06270	0.42	-0.8
1,303,503	-		DZA65_RS06270	0.42	-0.3
1,303,758	+		DZA65_RS06270	0.50	-1.3
1,303,758	+		DZA65_RS06270	0.50	-1.1
1,303,759	-		DZA65_RS06270	0.50	-2.4
1,303,772	+		DZA65_RS06270	0.51	+4.5
1,303,772	+		DZA65_RS06270	0.51	-0.9
1,303,773	-		DZA65_RS06270	0.51	+0.3
1,303,773	-		DZA65_RS06270	0.51	+0.2
1,303,773	-		DZA65_RS06270	0.51	-1.7
1,303,908	+		DZA65_RS06270	0.56	-1.3
1,303,908	+		DZA65_RS06270	0.56	-3.0
1,303,908	+				-0.5
1,303,908	+		DZA65_RS06270	0.56	+2.0
1,303,908	+		DZA65_RS06270	0.56	-2.0
1,303,909	-		DZA65_RS06270	0.56	-0.7
1,303,909	-		DZA65_RS06270	0.56	-0.3
1,303,963	-		DZA65_RS06270	0.58	-0.7
1,303,978	+		DZA65_RS06270	0.58	-0.5
1,303,978	+		DZA65_RS06270	0.58	-0.4
1,303,979	-		DZA65_RS06270	0.58	+0.7
1,303,979	-		DZA65_RS06270	0.58	-0.7
1,303,982	+		DZA65_RS06270	0.58	-2.5
1,303,982	+		DZA65_RS06270	0.58	+1.2
1,303,983	-		DZA65_RS06270	0.58	+2.7
1,303,983	-		DZA65_RS06270	0.58	+2.0
1,303,983	-		DZA65_RS06270	0.58	+0.3
1,304,018	+		DZA65_RS06270	0.59	+1.1
1,304,018	+		DZA65_RS06270	0.59	-2.0
1,304,018	+		DZA65_RS06270	0.59	-0.7
1,304,018	+		DZA65_RS06270	0.59	-2.4
1,304,018	+		DZA65_RS06270	0.59	+3.5
1,304,019	-		DZA65_RS06270	0.60	+1.3
1,304,019	-		DZA65_RS06270	0.60	-0.8
1,304,019	-		DZA65_RS06270	0.60	-2.0
1,304,024	+		DZA65_RS06270	0.60	+0.6
1,304,024	+		DZA65_RS06270	0.60	-1.5
1,304,024	+		DZA65_RS06270	0.60	-0.8
1,304,024	+		DZA65_RS06270	0.60	-1.5
1,304,024	+		DZA65_RS06270	0.60	+1.7
1,304,024	+		DZA65_RS06270	0.60	+1.2
1,304,025	-		DZA65_RS06270	0.60	-1.3
1,304,025	-		DZA65_RS06270	0.60	-1.0
1,304,025	-		DZA65_RS06270	0.60	-0.7
1,304,025	-		DZA65_RS06270	0.60	-0.3
1,304,025	-		DZA65_RS06270	0.60	+0.3
1,304,025	-		DZA65_RS06270	0.60	+0.3
1,304,025	-		DZA65_RS06270	0.60	+6.2
1,304,025	-		DZA65_RS06270	0.60	+0.2
1,304,025	-		DZA65_RS06270	0.60	-0.7
1,304,025	-		DZA65_RS06270	0.60	-1.7
1,304,025	-		DZA65_RS06270	0.60	-0.3
1,304,025	-		DZA65_RS06270	0.60	-0.5
1,304,025	-		DZA65_RS06270	0.60	-0.3
1,304,025	-		DZA65_RS06270	0.60	-0.8
1,304,025	-		DZA65_RS06270	0.60	-1.7
1,304,067	+		DZA65_RS06270	0.61	+0.0
1,304,082	+		DZA65_RS06270	0.62	-2.1
1,304,083	-		DZA65_RS06270	0.62	+0.9
1,304,101	+		DZA65_RS06270	0.62	-0.8
1,304,131	+		DZA65_RS06270	0.63	+2.1
1,304,131	+		DZA65_RS06270	0.63	-2.0
1,304,131	+		DZA65_RS06270	0.63	+0.9
1,304,132	-				+2.1
1,304,132	-		DZA65_RS06270	0.63	-0.3
1,304,132	-		DZA65_RS06270	0.63	+3.1
1,304,132	-		DZA65_RS06270	0.63	-0.7
1,304,132	-		DZA65_RS06270	0.63	+2.1
1,304,132	-		DZA65_RS06270	0.63	+1.3
1,304,165	+		DZA65_RS06270	0.65	-0.5
1,304,218	-		DZA65_RS06270	0.66	+3.7
1,304,444	+		DZA65_RS06270	0.74	+0.7
1,304,445	-		DZA65_RS06270	0.74	+0.3
1,304,445	-		DZA65_RS06270	0.74	+0.3
1,304,480	+				-1.7
1,304,481	-		DZA65_RS06270	0.76	-0.7
1,304,525	+		DZA65_RS06270	0.77	+1.3
1,304,548	+		DZA65_RS06270	0.78	-1.3
1,304,601	-		DZA65_RS06270	0.80	-1.3
1,304,617	+		DZA65_RS06270	0.80	-0.3
1,304,669	+		DZA65_RS06270	0.82	+3.0
1,304,669	+		DZA65_RS06270	0.82	-0.7
1,304,669	+		DZA65_RS06270	0.82	-0.3
1,304,669	+		DZA65_RS06270	0.82	+0.0
1,304,670	-		DZA65_RS06270	0.82	+1.1
1,304,670	-		DZA65_RS06270	0.82	-0.7
1,304,674	+		DZA65_RS06270	0.82	+2.2
1,304,675	-		DZA65_RS06270	0.82	-0.7
1,304,713	+		DZA65_RS06270	0.84	-0.8
1,304,713	+		DZA65_RS06270	0.84	-0.0
1,304,713	+		DZA65_RS06270	0.84	-0.3
1,304,713	+		DZA65_RS06270	0.84	+0.9
1,304,713	+		DZA65_RS06270	0.84	-0.1
1,304,713	+		DZA65_RS06270	0.84	-1.3
1,304,713	+		DZA65_RS06270	0.84	-1.8
1,304,713	+		DZA65_RS06270	0.84	+4.8
1,304,713	+		DZA65_RS06270	0.84	+1.0
1,304,713	+		DZA65_RS06270	0.84	+3.0
1,304,713	+		DZA65_RS06270	0.84	-1.5
1,304,713	+		DZA65_RS06270	0.84	-0.0
1,304,714	-		DZA65_RS06270	0.84	-1.4
1,304,714	-		DZA65_RS06270	0.84	+0.7
1,304,714	-		DZA65_RS06270	0.84	-0.3
1,304,714	-		DZA65_RS06270	0.84	+1.0
1,304,714	-		DZA65_RS06270	0.84	-1.4
1,304,714	-		DZA65_RS06270	0.84	-1.5
1,304,714	-		DZA65_RS06270	0.84	+0.7
1,304,771	+		DZA65_RS06270	0.86	-1.7
1,304,772	-		DZA65_RS06270	0.86	-0.3
1,304,772	-		DZA65_RS06270	0.86	-1.0
1,304,772	-		DZA65_RS06270	0.86	+0.0
1,304,772	-		DZA65_RS06270	0.86	+1.4
1,304,794	+		DZA65_RS06270	0.87	-1.3
1,304,794	+		DZA65_RS06270	0.87	+0.2
1,304,794	+				+0.3
1,304,794	+		DZA65_RS06270	0.87	-0.7
1,304,795	-		DZA65_RS06270	0.87	-0.7
1,305,083	-				-2.5
1,305,112	+				-0.3
1,305,113	-				+2.1
1,305,134	+				-1.3
1,305,135	-				+0.2
1,305,135	-				+1.5
1,305,137	+				+1.0
1,305,137	+				-0.1
1,305,137	+				-0.3
1,305,138	-				-1.0
1,305,138	-				-1.0
1,305,138	-				-2.0
1,305,142	+				+3.9
1,305,143	-				-1.5
1,305,143	-				+1.1
1,305,143	-				-0.3
1,305,177	-				-2.0
1,305,261	+				-0.7
1,305,261	+				-1.5
1,305,261	+				-1.0
1,305,261	+				-1.3
1,305,261	+				+2.5
1,305,262	-				-1.0
1,305,262	-				-1.0
1,305,262	-				+4.4
1,305,262	-				-1.0
1,305,262	-				-1.8
1,305,334	+		DZA65_RS06275	0.17	-0.7
1,305,334	+		DZA65_RS06275	0.17	+1.2
1,305,335	-		DZA65_RS06275	0.18	-1.8
1,305,395	+		DZA65_RS06275	0.27	-0.7
1,305,396	-		DZA65_RS06275	0.27	+0.3
1,305,617	+		DZA65_RS06275	0.61	+0.3
1,305,617	+		DZA65_RS06275	0.61	+1.8
1,305,617	+		DZA65_RS06275	0.61	-2.4
1,305,617	+		DZA65_RS06275	0.61	-0.7
1,305,618	-		DZA65_RS06275	0.61	-0.4
1,305,654	+		DZA65_RS06275	0.67	+0.3
1,305,654	+		DZA65_RS06275	0.67	-1.5
1,305,655	-		DZA65_RS06275	0.67	+1.7
1,305,655	-		DZA65_RS06275	0.67	-0.3
1,305,655	-		DZA65_RS06275	0.67	+1.9
1,305,668	-		DZA65_RS06275	0.69	-0.3
1,305,681	+		DZA65_RS06275	0.71	+0.7
1,305,681	+		DZA65_RS06275	0.71	+1.8
1,305,681	+		DZA65_RS06275	0.71	+0.3
1,305,685	+		DZA65_RS06275	0.71	-1.3
1,305,685	+		DZA65_RS06275	0.71	+0.4
1,305,686	-		DZA65_RS06275	0.71	+0.3
1,305,686	-				+0.7
1,305,686	-		DZA65_RS06275	0.71	+1.0
1,305,701	+		DZA65_RS06275	0.74	-3.0
1,305,701	+		DZA65_RS06275	0.74	+1.3
1,305,710	-		DZA65_RS06275	0.75	+1.9
1,305,784	+		DZA65_RS06275	0.86	+0.1
1,305,814	+				+1.2
1,305,815	-				-2.1
1,305,832	+				+1.3
1,305,832	+				-0.1
1,305,833	-				-0.5
1,305,833	-				-2.6
1,305,850	+				+1.6
1,305,850	+				+3.3
1,305,850	+				-0.7
1,305,854	+				+1.2
1,305,854	+				-1.0
1,305,855	-				+0.0
1,305,879	+				-1.6
1,305,880	-				-1.5
1,305,880	-				-0.3
1,305,885	+				-1.0
1,305,885	+				-1.0
1,305,885	+				-0.3
1,305,886	-				-1.3
1,305,886	-				-2.5
1,305,886	-				+0.3
1,305,950	+				-0.3
1,305,950	+				-0.7
1,305,951	-				-1.4
1,305,951	-				+2.1
1,305,973	+				-0.3
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1,305,974	-				-0.6
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1,305,976	+				-0.0
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1,305,977	-				-1.4
1,305,998	+				-0.5
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1,305,998	+				+0.9
1,305,999	-				-1.3
1,305,999	-				-0.3
1,305,999	-				-1.0
1,305,999	-				+1.3
1,306,096	+				+0.9
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1,306,096	+				+1.5
1,306,096	+				+1.6
1,306,096	+				-0.8
1,306,096	+				-2.3
1,306,097	-				-1.3
1,306,097	-				-0.5
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1,306,097	-				-2.0
1,306,097	-				-2.1
1,306,097	-				-1.5
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1,306,097	-				-1.8
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1,306,099	-				-0.7
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1,306,101	-				+1.7
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1,306,147	-		DZA65_RS06280	0.10	-0.7
1,306,161	-		DZA65_RS06280	0.11	-1.8
1,306,173	+		DZA65_RS06280	0.11	-0.1
1,306,173	+		DZA65_RS06280	0.11	+2.1
1,306,173	+		DZA65_RS06280	0.11	+1.0
1,306,173	+		DZA65_RS06280	0.11	-0.3
1,306,173	+		DZA65_RS06280	0.11	-0.3
1,306,173	+		DZA65_RS06280	0.11	-1.5
1,306,174	-		DZA65_RS06280	0.11	-0.3
1,306,174	-		DZA65_RS06280	0.11	-1.5