Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06230

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,291,286	+		DZA65_RS06225	0.79	-0.9
1,291,286	+		DZA65_RS06225	0.79	+0.1
1,291,287	-		DZA65_RS06225	0.79	+0.7
1,291,287	-		DZA65_RS06225	0.79	-1.7
1,291,287	-		DZA65_RS06225	0.79	-0.5
1,291,287	-		DZA65_RS06225	0.79	-0.2
1,291,287	-		DZA65_RS06225	0.79	+1.3
1,291,330	+		DZA65_RS06225	0.81	-1.3
1,291,330	+		DZA65_RS06225	0.81	-0.7
1,291,330	+		DZA65_RS06225	0.81	-1.0
1,291,330	+		DZA65_RS06225	0.81	+1.5
1,291,330	+		DZA65_RS06225	0.81	-1.8
1,291,330	+		DZA65_RS06225	0.81	-0.3
1,291,331	-		DZA65_RS06225	0.81	-1.5
1,291,331	-		DZA65_RS06225	0.81	-0.7
1,291,331	-		DZA65_RS06225	0.81	+0.5
1,291,331	-		DZA65_RS06225	0.81	+2.7
1,291,331	-		DZA65_RS06225	0.81	+0.8
1,291,331	-		DZA65_RS06225	0.81	+1.3
1,291,331	-		DZA65_RS06225	0.81	-0.3
1,291,548	+				-0.7
1,291,549	-		DZA65_RS06225	0.88	+0.3
1,291,549	-		DZA65_RS06225	0.88	+0.8
1,291,571	-		DZA65_RS06225	0.89	-2.3
1,291,678	+				+1.9
1,291,758	+				-2.5
1,291,862	+				-2.3
1,291,863	-				-2.8
1,291,863	-				-0.3
1,291,863	-				-0.3
1,291,876	+				-1.7
1,291,876	+				-1.8
1,291,876	+				-0.4
1,291,876	+				-0.3
1,291,876	+				-1.0
1,291,876	+				+1.4
1,291,876	+				-0.6
1,291,876	+				-2.9
1,291,877	-				-1.3
1,291,877	-				+0.7
1,291,877	-				+1.3
1,291,877	-				+0.7
1,291,877	-				-0.7
1,291,879	+				-0.3
1,291,879	+				-2.0
1,291,879	+				+2.0
1,291,879	+				-0.8
1,291,879	+				-0.7
1,291,879	+				-1.7
1,291,879	+				-0.7
1,291,880	-				+2.5
1,291,880	-				-0.7
1,291,880	-				+3.7
1,291,883	-				-1.4
1,291,883	-				+0.3
1,291,883	-				-1.5
1,291,883	-				-2.0
1,291,940	+				-2.0
1,291,946	+				+0.3
1,291,946	+				-1.5
1,291,946	+				-1.5
1,291,946	+				-2.5
1,291,946	+				-0.3
1,291,946	+				-3.6
1,291,946	+				+0.3
1,291,947	-				-1.8
1,291,947	-				-1.0
1,291,947	-				+2.7
1,291,947	-				-0.7
1,291,953	+				-0.3
1,292,005	+				-2.6
1,292,006	-				-0.3
1,292,057	+		DZA65_RS06230	0.13	+1.5
1,292,057	+		DZA65_RS06230	0.13	-1.6
1,292,058	-		DZA65_RS06230	0.14	+0.8
1,292,058	-		DZA65_RS06230	0.14	-0.3
1,292,058	-		DZA65_RS06230	0.14	-1.9
1,292,114	+		DZA65_RS06230	0.27	-0.7
1,292,115	-		DZA65_RS06230	0.27	+0.3
1,292,115	-		DZA65_RS06230	0.27	+1.5
1,292,115	-		DZA65_RS06230	0.27	-1.0
1,292,128	+		DZA65_RS06230	0.30	-3.1
1,292,128	+		DZA65_RS06230	0.30	-2.0
1,292,128	+		DZA65_RS06230	0.30	+0.3
1,292,128	+				+0.9
1,292,129	-		DZA65_RS06230	0.30	-2.0
1,292,129	-		DZA65_RS06230	0.30	-1.5
1,292,129	-		DZA65_RS06230	0.30	-0.8
1,292,293	+		DZA65_RS06230	0.69	+0.3
1,292,293	+		DZA65_RS06230	0.69	-0.3
1,292,294	-		DZA65_RS06230	0.70	-2.1
1,292,294	-		DZA65_RS06230	0.70	-1.1
1,292,294	-		DZA65_RS06230	0.70	-0.7
1,292,294	-		DZA65_RS06230	0.70	+1.4
1,292,446	+				-0.3
1,292,446	+				+0.3
1,292,446	+				-0.3
1,292,446	+				-1.7
1,292,446	+				-1.0
1,292,465	+				-1.3
1,292,465	+				-1.5
1,292,465	+				-0.9
1,292,466	-				-1.3
1,292,466	-				+3.3
1,292,466	-				-1.3
1,292,466	-				+0.5
1,292,494	+				+1.3
1,292,494	+				+1.9
1,292,494	+				+2.6
1,292,494	+				-0.7
1,292,494	+				+1.6
1,292,494	+				-0.1
1,292,495	-				-0.3
1,292,495	-				-1.3
1,292,495	-				-2.0
1,292,495	-				-2.0
1,292,547	+				-2.8
1,292,547	+				-1.5
1,292,547	+				+3.1
1,292,547	+				+0.4
1,292,673	+		DZA65_RS06235	0.34	-0.1
1,292,673	+		DZA65_RS06235	0.34	+2.4
1,292,673	+		DZA65_RS06235	0.34	-0.7
1,292,673	+		DZA65_RS06235	0.34	+1.6
1,292,673	+		DZA65_RS06235	0.34	-0.7
1,292,673	+		DZA65_RS06235	0.34	-1.7
1,292,674	-		DZA65_RS06235	0.34	-0.5
1,292,674	-		DZA65_RS06235	0.34	+1.3
1,292,674	-		DZA65_RS06235	0.34	-0.7
1,292,674	-		DZA65_RS06235	0.34	-1.5
1,292,674	-		DZA65_RS06235	0.34	+1.2
1,292,674	-		DZA65_RS06235	0.34	-1.4
1,292,674	-		DZA65_RS06235	0.34	-1.5
1,292,676	+		DZA65_RS06235	0.34	+2.1
1,292,676	+				+0.0
1,292,676	+		DZA65_RS06235	0.34	-0.7
1,292,676	+		DZA65_RS06235	0.34	-0.7
1,292,676	+		DZA65_RS06235	0.34	-0.7
1,292,676	+		DZA65_RS06235	0.34	+3.2
1,292,676	+		DZA65_RS06235	0.34	+2.7
1,292,677	-		DZA65_RS06235	0.34	+0.3
1,292,677	-		DZA65_RS06235	0.34	+1.1
1,292,677	-		DZA65_RS06235	0.34	+1.5
1,292,677	-		DZA65_RS06235	0.34	+1.3
1,292,677	-		DZA65_RS06235	0.34	-1.3
1,292,677	-		DZA65_RS06235	0.34	+4.5
1,292,677	-		DZA65_RS06235	0.34	+1.5
1,292,677	-		DZA65_RS06235	0.34	+0.1
1,292,677	-		DZA65_RS06235	0.34	-1.5
1,292,677	-		DZA65_RS06235	0.34	+0.7
1,292,974	+				-1.0
1,292,974	+				-1.8
1,292,974	+				-1.8
1,292,974	+				+0.2
1,292,974	+				+0.5
1,292,974	+				-1.3
1,293,112	+		DZA65_RS06240	0.15	+0.3
1,293,112	+		DZA65_RS06240	0.15	-0.3
1,293,113	-		DZA65_RS06240	0.15	-2.8
1,293,113	-		DZA65_RS06240	0.15	+0.7
1,293,130	+		DZA65_RS06240	0.17	+4.2
1,293,130	+		DZA65_RS06240	0.17	+1.5
1,293,130	+		DZA65_RS06240	0.17	+0.3
1,293,131	-		DZA65_RS06240	0.17	+1.2
1,293,131	-		DZA65_RS06240	0.17	-1.7
1,293,146	+		DZA65_RS06240	0.19	-1.3
1,293,146	+		DZA65_RS06240	0.19	-1.8
1,293,146	+		DZA65_RS06240	0.19	-1.8
1,293,332	+		DZA65_RS06240	0.39	-1.0
1,293,333	-		DZA65_RS06240	0.39	+1.1