Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04450

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04445 and DZA65_RS04450 are separated by 62 nucleotidesDZA65_RS04450 and DZA65_RS04455 are separated by 62 nucleotides DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652 _RS04445 DZA65_RS04450: DZA65_RS04450 - FMN-binding protein, at 928,715 to 929,065 _RS04450 DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507 _RS04455 Position (kb) 928 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 927.739 kb on + strand, within DZA65_RS04445at 927.740 kb on - strand, within DZA65_RS04445at 927.740 kb on - strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strandat 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.813 kb on + strand, within DZA65_RS04445at 927.813 kb on + strand, within DZA65_RS04445at 927.814 kb on - strand, within DZA65_RS04445at 927.814 kb on - strand, within DZA65_RS04445at 927.916 kb on + strand, within DZA65_RS04445at 927.916 kb on + strand, within DZA65_RS04445at 927.916 kb on + strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.961 kb on - strand, within DZA65_RS04445at 927.974 kb on + strand, within DZA65_RS04445at 927.975 kb on - strand, within DZA65_RS04445at 927.975 kb on - strand, within DZA65_RS04445at 927.975 kb on - strand, within DZA65_RS04445at 927.981 kb on + strand, within DZA65_RS04445at 927.982 kb on - strand, within DZA65_RS04445at 927.982 kb on - strand, within DZA65_RS04445at 927.982 kb on - strand, within DZA65_RS04445at 928.076 kb on + strand, within DZA65_RS04445at 928.077 kb on - strand, within DZA65_RS04445at 928.077 kb on - strand, within DZA65_RS04445at 928.077 kb on - strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.192 kb on + strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.193 kb on - strand, within DZA65_RS04445at 928.291 kb on + strand, within DZA65_RS04445at 928.292 kb on - strand, within DZA65_RS04445at 928.292 kb on - strand, within DZA65_RS04445at 928.329 kb on + strand, within DZA65_RS04445at 928.329 kb on + strand, within DZA65_RS04445at 928.329 kb on + strand, within DZA65_RS04445at 928.329 kb on + strand, within DZA65_RS04445at 928.330 kb on - strand, within DZA65_RS04445at 928.330 kb on - strand, within DZA65_RS04445at 928.330 kb on - strand, within DZA65_RS04445at 928.330 kb on - strand, within DZA65_RS04445at 928.330 kb on - strand, within DZA65_RS04445at 928.458 kb on - strand, within DZA65_RS04445at 928.548 kb on - strandat 928.617 kb on + strandat 928.653 kb on - strandat 928.653 kb on - strandat 928.655 kb on + strandat 928.655 kb on + strandat 928.655 kb on + strandat 928.655 kb on + strandat 928.656 kb on - strandat 928.656 kb on - strandat 928.656 kb on - strandat 928.672 kb on - strandat 928.672 kb on - strandat 928.737 kb on + strandat 928.972 kb on - strand, within DZA65_RS04450at 929.065 kb on + strandat 929.065 kb on + strandat 929.066 kb on - strandat 929.066 kb on - strandat 929.066 kb on - strandat 929.089 kb on - strandat 929.097 kb on - strandat 929.099 kb on + strandat 929.099 kb on + strandat 929.100 kb on - strandat 929.103 kb on + strandat 929.104 kb on - strandat 929.104 kb on - strandat 929.104 kb on - strandat 929.146 kb on + strandat 929.146 kb on + strandat 929.146 kb on + strandat 929.147 kb on - strandat 929.147 kb on - strandat 929.147 kb on - strandat 929.147 kb on - strandat 929.149 kb on + strandat 929.149 kb on + strandat 929.149 kb on + strandat 929.149 kb on + strandat 929.149 kb on + strandat 929.149 kb on + strandat 929.149 kb on + strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.150 kb on - strandat 929.704 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.726 kb on + strand, within DZA65_RS04455at 929.727 kb on - strand, within DZA65_RS04455at 929.727 kb on - strand, within DZA65_RS04455at 929.727 kb on - strand, within DZA65_RS04455at 929.727 kb on - strand, within DZA65_RS04455at 929.727 kb on - strand, within DZA65_RS04455at 929.727 kb on - strand, within DZA65_RS04455at 929.727 kb on - strand, within DZA65_RS04455at 929.777 kb on + strand, within DZA65_RS04455at 929.778 kb on - strand, within DZA65_RS04455at 929.795 kb on + strand, within DZA65_RS04455at 929.796 kb on - strand, within DZA65_RS04455at 929.796 kb on - strand, within DZA65_RS04455at 929.934 kb on + strand, within DZA65_RS04455at 929.935 kb on - strand, within DZA65_RS04455at 929.935 kb on - strand, within DZA65_RS04455at 929.973 kb on - strand, within DZA65_RS04455

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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927,739 + DZA65_RS04445 0.42 -1.2
927,740 - DZA65_RS04445 0.42 +1.8
927,740 - DZA65_RS04445 0.42 -1.0
927,810 + DZA65_RS04445 0.46 -1.7
927,810 + DZA65_RS04445 0.46 -1.0
927,810 + DZA65_RS04445 0.46 +0.6
927,810 + DZA65_RS04445 0.46 -1.6
927,810 + DZA65_RS04445 0.46 +0.8
927,810 + DZA65_RS04445 0.46 -1.8
927,810 + DZA65_RS04445 0.46 -2.2
927,810 + DZA65_RS04445 0.46 +3.2
927,810 + DZA65_RS04445 0.46 +2.9
927,810 + -1.0
927,811 - DZA65_RS04445 0.46 -1.0
927,811 - DZA65_RS04445 0.46 -1.2
927,811 - DZA65_RS04445 0.46 +0.8
927,811 - DZA65_RS04445 0.46 +2.5
927,811 - DZA65_RS04445 0.46 -1.0
927,811 - DZA65_RS04445 0.46 +0.3
927,811 - DZA65_RS04445 0.46 -0.2
927,811 - DZA65_RS04445 0.46 +0.3
927,811 - DZA65_RS04445 0.46 -1.1
927,811 - DZA65_RS04445 0.46 +1.3
927,811 - DZA65_RS04445 0.46 -1.7
927,811 - DZA65_RS04445 0.46 +0.3
927,811 - DZA65_RS04445 0.46 -0.1
927,811 - DZA65_RS04445 0.46 -1.0
927,811 - DZA65_RS04445 0.46 -0.7
927,813 + DZA65_RS04445 0.47 -0.5
927,813 + DZA65_RS04445 0.47 +3.3
927,814 - DZA65_RS04445 0.47 -0.5
927,814 - DZA65_RS04445 0.47 +1.2
927,916 + DZA65_RS04445 0.53 -0.2
927,916 + DZA65_RS04445 0.53 -1.7
927,916 + DZA65_RS04445 0.53 -0.7
927,917 - DZA65_RS04445 0.53 -1.7
927,917 - DZA65_RS04445 0.53 +0.3
927,917 - DZA65_RS04445 0.53 +1.1
927,917 - DZA65_RS04445 0.53 +2.9
927,917 - DZA65_RS04445 0.53 +0.0
927,917 - DZA65_RS04445 0.53 +0.2
927,961 - DZA65_RS04445 0.56 -1.7
927,974 + DZA65_RS04445 0.57 -0.7
927,975 - DZA65_RS04445 0.57 -1.0
927,975 - DZA65_RS04445 0.57 -0.4
927,975 - DZA65_RS04445 0.57 +0.2
927,981 + DZA65_RS04445 0.57 -2.7
927,982 - DZA65_RS04445 0.57 -0.7
927,982 - DZA65_RS04445 0.57 -2.1
927,982 - DZA65_RS04445 0.57 +2.7
928,076 + DZA65_RS04445 0.63 +2.5
928,077 - DZA65_RS04445 0.63 -2.7
928,077 - DZA65_RS04445 0.63 +4.1
928,077 - DZA65_RS04445 0.63 -1.2
928,192 + DZA65_RS04445 0.71 +2.2
928,192 + DZA65_RS04445 0.71 -1.2
928,192 + DZA65_RS04445 0.71 -2.0
928,192 + DZA65_RS04445 0.71 +2.9
928,192 + DZA65_RS04445 0.71 +3.3
928,192 + DZA65_RS04445 0.71 +1.7
928,192 + DZA65_RS04445 0.71 -0.1
928,192 + DZA65_RS04445 0.71 +0.3
928,192 + DZA65_RS04445 0.71 -1.0
928,193 - DZA65_RS04445 0.71 -0.7
928,193 - DZA65_RS04445 0.71 +0.8
928,193 - DZA65_RS04445 0.71 -2.9
928,193 - DZA65_RS04445 0.71 +3.6
928,193 - DZA65_RS04445 0.71 -2.4
928,193 - DZA65_RS04445 0.71 -0.7
928,193 - DZA65_RS04445 0.71 -1.1
928,193 - DZA65_RS04445 0.71 -2.0
928,193 - DZA65_RS04445 0.71 +0.3
928,291 + DZA65_RS04445 0.77 -1.2
928,292 - DZA65_RS04445 0.77 -1.0
928,292 - DZA65_RS04445 0.77 +1.3
928,329 + DZA65_RS04445 0.79 -1.2
928,329 + DZA65_RS04445 0.79 -0.8
928,329 + DZA65_RS04445 0.79 -0.1
928,329 + DZA65_RS04445 0.79 -0.5
928,330 - DZA65_RS04445 0.79 +0.8
928,330 - DZA65_RS04445 0.79 -1.1
928,330 - DZA65_RS04445 0.79 -2.8
928,330 - DZA65_RS04445 0.79 +0.3
928,330 - DZA65_RS04445 0.79 -0.7
928,458 - DZA65_RS04445 0.88 -0.4
928,548 - -3.3
928,617 + -0.7
928,653 - +1.3
928,653 - +1.4
928,655 + -1.7
928,655 + -0.7
928,655 + +3.3
928,655 + -1.0
928,656 - +0.3
928,656 - -0.4
928,656 - -2.8
928,672 - -2.8
928,672 - +1.2
928,737 + -1.6
928,972 - DZA65_RS04450 0.73 +2.3
929,065 + -1.2
929,065 + +2.6
929,066 - -0.5
929,066 - +1.0
929,066 - +1.6
929,089 - -0.2
929,097 - +0.0
929,099 + +1.4
929,099 + -1.1
929,100 - -1.2
929,103 + -2.7
929,104 - -0.7
929,104 - +1.9
929,104 - -1.5
929,146 + -1.1
929,146 + -1.7
929,146 + -1.2
929,147 - -2.2
929,147 - -2.2
929,147 - -1.2
929,147 - -0.7
929,149 + -1.7
929,149 + -1.5
929,149 + -0.1
929,149 + -0.7
929,149 + -2.1
929,149 + +2.7
929,149 + -0.2
929,150 - +0.9
929,150 - +1.3
929,150 - +1.6
929,150 - +0.5
929,150 - -0.2
929,150 - -1.2
929,150 - -1.8
929,150 - +1.8
929,150 - +0.1
929,150 - -0.7
929,150 - -1.2
929,150 - +1.5
929,150 - -1.0
929,150 - +0.1
929,150 - +0.3
929,704 + DZA65_RS04455 0.42 +0.3
929,726 + DZA65_RS04455 0.43 +3.2
929,726 + DZA65_RS04455 0.43 +2.2
929,726 + DZA65_RS04455 0.43 +3.6
929,726 + DZA65_RS04455 0.43 -0.2
929,726 + DZA65_RS04455 0.43 -0.7
929,726 + DZA65_RS04455 0.43 -0.7
929,726 + DZA65_RS04455 0.43 -1.0
929,726 + DZA65_RS04455 0.43 -0.2
929,727 - DZA65_RS04455 0.43 -1.7
929,727 - DZA65_RS04455 0.43 -2.2
929,727 - DZA65_RS04455 0.43 -1.8
929,727 - DZA65_RS04455 0.43 -0.9
929,727 - DZA65_RS04455 0.43 +1.6
929,727 - DZA65_RS04455 0.43 -1.7
929,727 - DZA65_RS04455 0.43 +1.8
929,777 + DZA65_RS04455 0.47 -1.7
929,778 - DZA65_RS04455 0.47 -0.0
929,795 + DZA65_RS04455 0.48 -1.2
929,796 - DZA65_RS04455 0.48 +1.9
929,796 - DZA65_RS04455 0.48 -1.0
929,934 + DZA65_RS04455 0.58 +0.9
929,935 - DZA65_RS04455 0.58 -1.0
929,935 - DZA65_RS04455 0.58 -0.2
929,973 - DZA65_RS04455 0.61 +1.0

Or see this region's nucleotide sequence