Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03670 and DZA65_RS03675 are separated by 806 nucleotides DZA65_RS03675 and DZA65_RS03680 are separated by 210 nucleotides
DZA65_RS03670: DZA65_RS03670 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 772,225 to 773,145
_RS03670
DZA65_RS03675: DZA65_RS03675 - NCS2 family permease, at 773,952 to 775,319
_RS03675
DZA65_RS03680: DZA65_RS03680 - Na+/H+ antiporter, at 775,530 to 777,176
_RS03680
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 772.970 kb on - strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 773.035 kb on + strand, within DZA65_RS03670 at 773.036 kb on - strand, within DZA65_RS03670 at 773.083 kb on + strand at 773.087 kb on + strand at 773.087 kb on + strand at 773.088 kb on - strand at 773.088 kb on - strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.191 kb on + strand at 773.191 kb on + strand at 773.191 kb on + strand at 773.192 kb on - strand at 773.235 kb on + strand at 773.292 kb on + strand at 773.292 kb on + strand at 773.293 kb on - strand at 773.293 kb on - strand at 773.293 kb on - strand at 773.317 kb on + strand at 773.317 kb on + strand at 773.317 kb on + strand at 773.318 kb on - strand at 773.318 kb on - strand at 773.326 kb on + strand at 773.327 kb on - strand at 773.327 kb on - strand at 773.327 kb on - strand at 773.340 kb on - strand at 773.340 kb on - strand at 773.402 kb on + strand at 773.402 kb on + strand at 773.403 kb on - strand at 773.403 kb on - strand at 773.403 kb on - strand at 773.422 kb on + strand at 773.423 kb on - strand at 773.426 kb on + strand at 773.427 kb on - strand at 773.454 kb on + strand at 773.454 kb on + strand at 773.454 kb on + strand at 773.455 kb on - strand at 773.501 kb on + strand at 773.570 kb on - strand at 773.570 kb on - strand at 773.672 kb on + strand at 773.673 kb on - strand at 773.704 kb on + strand at 773.705 kb on - strand at 773.849 kb on - strand at 773.885 kb on - strand at 773.894 kb on + strand at 773.900 kb on + strand at 773.900 kb on + strand at 773.901 kb on - strand at 773.926 kb on - strand at 773.946 kb on + strand at 773.947 kb on - strand at 773.947 kb on - strand at 774.023 kb on + strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.091 kb on - strand, within DZA65_RS03675 at 774.122 kb on + strand, within DZA65_RS03675 at 774.123 kb on - strand, within DZA65_RS03675 at 774.281 kb on + strand, within DZA65_RS03675 at 774.281 kb on + strand, within DZA65_RS03675 at 774.282 kb on - strand, within DZA65_RS03675 at 774.282 kb on - strand, within DZA65_RS03675 at 774.282 kb on - strand at 774.282 kb on - strand, within DZA65_RS03675 at 774.314 kb on + strand, within DZA65_RS03675 at 774.314 kb on + strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.325 kb on + strand, within DZA65_RS03675 at 774.325 kb on + strand, within DZA65_RS03675 at 774.325 kb on + strand, within DZA65_RS03675 at 774.332 kb on + strand, within DZA65_RS03675 at 774.434 kb on + strand, within DZA65_RS03675 at 774.434 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.713 kb on + strand, within DZA65_RS03675 at 774.714 kb on - strand at 774.845 kb on + strand, within DZA65_RS03675 at 774.846 kb on - strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.928 kb on - strand, within DZA65_RS03675 at 775.032 kb on + strand, within DZA65_RS03675 at 775.032 kb on + strand, within DZA65_RS03675 at 775.033 kb on - strand, within DZA65_RS03675 at 775.048 kb on - strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.147 kb on + strand, within DZA65_RS03675 at 775.148 kb on - strand, within DZA65_RS03675 at 775.156 kb on + strand, within DZA65_RS03675 at 775.175 kb on + strand, within DZA65_RS03675 at 775.175 kb on + strand, within DZA65_RS03675 at 775.175 kb on + strand, within DZA65_RS03675 at 775.176 kb on - strand, within DZA65_RS03675 at 775.178 kb on + strand, within DZA65_RS03675 at 775.178 kb on + strand, within DZA65_RS03675 at 775.179 kb on - strand, within DZA65_RS03675 at 775.179 kb on - strand, within DZA65_RS03675 at 775.179 kb on - strand, within DZA65_RS03675 at 775.267 kb on + strand at 775.267 kb on + strand at 775.267 kb on + strand at 775.268 kb on - strand at 775.271 kb on + strand at 775.271 kb on + strand at 775.272 kb on - strand at 775.296 kb on + strand at 775.297 kb on - strand at 775.317 kb on + strand at 775.318 kb on - strand at 775.330 kb on + strand at 775.331 kb on - strand at 775.370 kb on - strand at 775.426 kb on + strand at 775.506 kb on + strand at 775.507 kb on - strand at 775.507 kb on - strand at 775.507 kb on - strand at 775.538 kb on - strand at 775.600 kb on + strand at 775.600 kb on + strand at 775.601 kb on - strand at 775.601 kb on - strand at 775.701 kb on - strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.773 kb on - strand, within DZA65_RS03680 at 775.773 kb on - strand, within DZA65_RS03680 at 775.773 kb on - strand, within DZA65_RS03680 at 775.814 kb on + strand, within DZA65_RS03680 at 775.815 kb on - strand, within DZA65_RS03680 at 775.972 kb on + strand, within DZA65_RS03680 at 775.972 kb on + strand, within DZA65_RS03680 at 775.973 kb on - strand, within DZA65_RS03680 at 775.973 kb on - strand, within DZA65_RS03680 at 776.086 kb on + strand, within DZA65_RS03680 at 776.087 kb on - strand, within DZA65_RS03680 at 776.136 kb on + strand, within DZA65_RS03680 at 776.136 kb on + strand, within DZA65_RS03680 at 776.137 kb on - strand, within DZA65_RS03680 at 776.137 kb on - strand, within DZA65_RS03680 at 776.197 kb on + strand, within DZA65_RS03680 at 776.198 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.226 kb on + strand, within DZA65_RS03680 at 776.227 kb on - strand, within DZA65_RS03680 at 776.288 kb on + strand, within DZA65_RS03680 at 776.288 kb on + strand, within DZA65_RS03680 at 776.289 kb on - strand, within DZA65_RS03680
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 772,970 - DZA65_RS03670 0.81 -2.1 772,971 + DZA65_RS03670 0.81 -0.4 772,971 + DZA65_RS03670 0.81 -1.2 772,971 + DZA65_RS03670 0.81 +2.0 772,971 + DZA65_RS03670 0.81 +0.4 772,971 + DZA65_RS03670 0.81 -1.7 772,971 + DZA65_RS03670 0.81 +1.4 772,972 - DZA65_RS03670 0.81 -1.2 772,972 - DZA65_RS03670 0.81 +1.4 772,972 - DZA65_RS03670 0.81 -0.6 773,035 + DZA65_RS03670 0.88 -0.2 773,036 - DZA65_RS03670 0.88 -1.3 773,083 + -1.0 773,087 + +0.0 773,087 + -3.3 773,088 - -1.6 773,088 - -1.0 773,188 + -2.6 773,188 + +0.6 773,188 + +0.4 773,188 + -3.4 773,189 - -0.6 773,189 - +0.8 773,189 - -0.6 773,189 - +1.0 773,191 + +1.1 773,191 + +0.1 773,191 + -2.2 773,192 - -1.2 773,235 + -0.2 773,292 + +0.4 773,292 + +2.4 773,293 - -0.6 773,293 - +1.4 773,293 - -1.0 773,317 + -3.2 773,317 + -1.0 773,317 + -1.7 773,318 - +0.4 773,318 - +0.6 773,326 + +0.1 773,327 - -1.0 773,327 - -0.4 773,327 - +3.8 773,340 - -1.0 773,340 - +2.1 773,402 + +0.6 773,402 + -2.8 773,403 - +2.0 773,403 - +1.4 773,403 - -0.3 773,422 + -1.2 773,423 - -2.2 773,426 + -1.0 773,427 - +2.7 773,454 + -0.6 773,454 + -0.6 773,454 + -1.2 773,455 - -1.4 773,501 + -2.9 773,570 - +1.4 773,570 - +0.4 773,672 + +0.4 773,673 - +1.4 773,704 + -1.0 773,705 - -0.2 773,849 - -1.5 773,885 - -1.0 773,894 + -1.8 773,900 + -0.6 773,900 + +1.9 773,901 - +0.0 773,926 - -2.0 773,946 + -0.6 773,947 - -0.2 773,947 - -0.1 774,023 + +2.6 774,024 - -1.2 774,024 - -1.0 774,024 - +2.3 774,024 - +0.0 774,024 - +0.4 774,024 - -0.2 774,091 - DZA65_RS03675 0.10 +2.6 774,122 + DZA65_RS03675 0.12 -0.8 774,123 - DZA65_RS03675 0.12 -0.2 774,281 + DZA65_RS03675 0.24 -2.5 774,281 + DZA65_RS03675 0.24 -1.4 774,282 - DZA65_RS03675 0.24 +0.8 774,282 - DZA65_RS03675 0.24 -1.0 774,282 - -0.6 774,282 - DZA65_RS03675 0.24 +5.1 774,314 + DZA65_RS03675 0.26 -0.8 774,314 + DZA65_RS03675 0.26 +2.8 774,315 - DZA65_RS03675 0.27 +0.1 774,315 - DZA65_RS03675 0.27 -1.2 774,315 - DZA65_RS03675 0.27 +0.4 774,315 - DZA65_RS03675 0.27 -2.2 774,315 - DZA65_RS03675 0.27 +2.6 774,315 - DZA65_RS03675 0.27 -1.8 774,325 + DZA65_RS03675 0.27 -0.3 774,325 + DZA65_RS03675 0.27 +2.0 774,325 + DZA65_RS03675 0.27 -0.2 774,332 + DZA65_RS03675 0.28 +0.7 774,434 + DZA65_RS03675 0.35 -0.0 774,434 + DZA65_RS03675 0.35 -1.4 774,645 + DZA65_RS03675 0.51 -1.4 774,645 + DZA65_RS03675 0.51 -1.0 774,645 + DZA65_RS03675 0.51 -2.7 774,645 + DZA65_RS03675 0.51 -0.4 774,645 + DZA65_RS03675 0.51 +1.8 774,646 - DZA65_RS03675 0.51 +1.4 774,646 - DZA65_RS03675 0.51 +1.9 774,646 - DZA65_RS03675 0.51 +1.4 774,646 - DZA65_RS03675 0.51 +0.4 774,646 - DZA65_RS03675 0.51 -0.0 774,713 + DZA65_RS03675 0.56 -1.0 774,714 - -1.0 774,845 + DZA65_RS03675 0.65 -0.5 774,846 - DZA65_RS03675 0.65 -1.0 774,927 + DZA65_RS03675 0.71 -1.6 774,927 + DZA65_RS03675 0.71 +0.0 774,927 + DZA65_RS03675 0.71 -2.9 774,927 + DZA65_RS03675 0.71 +1.3 774,928 - DZA65_RS03675 0.71 -0.2 775,032 + DZA65_RS03675 0.79 -2.3 775,032 + DZA65_RS03675 0.79 +1.1 775,033 - DZA65_RS03675 0.79 -1.8 775,048 - DZA65_RS03675 0.80 -2.1 775,071 + DZA65_RS03675 0.82 -1.8 775,071 + DZA65_RS03675 0.82 -2.4 775,071 + DZA65_RS03675 0.82 -1.2 775,071 + DZA65_RS03675 0.82 +0.3 775,071 + DZA65_RS03675 0.82 -1.0 775,071 + DZA65_RS03675 0.82 -2.2 775,071 + DZA65_RS03675 0.82 +0.7 775,071 + DZA65_RS03675 0.82 -2.2 775,071 + DZA65_RS03675 0.82 -0.4 775,071 + DZA65_RS03675 0.82 -1.4 775,072 - DZA65_RS03675 0.82 -0.2 775,072 - DZA65_RS03675 0.82 +0.8 775,072 - DZA65_RS03675 0.82 +1.0 775,072 - DZA65_RS03675 0.82 -2.8 775,072 - DZA65_RS03675 0.82 +1.4 775,072 - DZA65_RS03675 0.82 -1.8 775,072 - DZA65_RS03675 0.82 -2.7 775,072 - DZA65_RS03675 0.82 -1.4 775,072 - DZA65_RS03675 0.82 -1.1 775,072 - DZA65_RS03675 0.82 -0.2 775,072 - DZA65_RS03675 0.82 -1.1 775,072 - DZA65_RS03675 0.82 +3.8 775,072 - DZA65_RS03675 0.82 -1.2 775,072 - DZA65_RS03675 0.82 -1.8 775,072 - DZA65_RS03675 0.82 -1.0 775,147 + DZA65_RS03675 0.87 -1.8 775,148 - DZA65_RS03675 0.87 +3.6 775,156 + DZA65_RS03675 0.88 -2.0 775,175 + DZA65_RS03675 0.89 -2.3 775,175 + DZA65_RS03675 0.89 -0.2 775,175 + DZA65_RS03675 0.89 +0.4 775,176 - DZA65_RS03675 0.89 -1.4 775,178 + DZA65_RS03675 0.90 -1.4 775,178 + DZA65_RS03675 0.90 -1.0 775,179 - DZA65_RS03675 0.90 -1.4 775,179 - DZA65_RS03675 0.90 -0.0 775,179 - DZA65_RS03675 0.90 -2.3 775,267 + +0.6 775,267 + -2.2 775,267 + -0.7 775,268 - +0.4 775,271 + +2.4 775,271 + -1.0 775,272 - +1.0 775,296 + +0.4 775,297 - -3.2 775,317 + -0.6 775,318 - -1.5 775,330 + +4.0 775,331 - -1.8 775,370 - -0.6 775,426 + -1.1 775,506 + +0.4 775,507 - -1.6 775,507 - +0.3 775,507 - +2.2 775,538 - +0.1 775,600 + +5.2 775,600 + -1.1 775,601 - +1.0 775,601 - -1.8 775,701 - DZA65_RS03680 0.10 +0.0 775,772 + DZA65_RS03680 0.15 +3.2 775,772 + DZA65_RS03680 0.15 +2.0 775,772 + DZA65_RS03680 0.15 -1.6 775,772 + DZA65_RS03680 0.15 -0.6 775,773 - DZA65_RS03680 0.15 +3.0 775,773 - DZA65_RS03680 0.15 -0.6 775,773 - DZA65_RS03680 0.15 +0.4 775,814 + DZA65_RS03680 0.17 +0.9 775,815 - DZA65_RS03680 0.17 -1.2 775,972 + DZA65_RS03680 0.27 -1.0 775,972 + DZA65_RS03680 0.27 -2.0 775,973 - DZA65_RS03680 0.27 +0.1 775,973 - DZA65_RS03680 0.27 +6.1 776,086 + DZA65_RS03680 0.34 +0.0 776,087 - DZA65_RS03680 0.34 -1.4 776,136 + DZA65_RS03680 0.37 -2.3 776,136 + DZA65_RS03680 0.37 -1.4 776,137 - DZA65_RS03680 0.37 -0.2 776,137 - DZA65_RS03680 0.37 +4.1 776,197 + DZA65_RS03680 0.40 +3.2 776,198 - DZA65_RS03680 0.41 -0.6 776,201 - DZA65_RS03680 0.41 -1.2 776,201 - DZA65_RS03680 0.41 +1.4 776,201 - DZA65_RS03680 0.41 -1.0 776,201 - DZA65_RS03680 0.41 -1.2 776,226 + DZA65_RS03680 0.42 +2.4 776,227 - DZA65_RS03680 0.42 +1.7 776,288 + DZA65_RS03680 0.46 -0.6 776,288 + DZA65_RS03680 0.46 +0.8 776,289 - DZA65_RS03680 0.46 -1.4
Or see this region's nucleotide sequence