Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02300 and DZA65_RS02305 are separated by 34 nucleotides DZA65_RS02305 and DZA65_RS02310 are separated by 75 nucleotides DZA65_RS02310 and DZA65_RS02315 are separated by 688 nucleotides
DZA65_RS02300: DZA65_RS02300 - type-1Ba cytolytic delta-endotoxin, at 497,207 to 497,818
_RS02300
DZA65_RS02305: DZA65_RS02305 - type-2Aa cytolytic delta-endotoxin, at 497,853 to 498,452
_RS02305
DZA65_RS02310: DZA65_RS02310 - delta-endotoxin CytB, at 498,528 to 499,163
_RS02310
DZA65_RS02315: DZA65_RS02315 - ABC transporter substrate-binding protein, at 499,852 to 501,399
_RS02315
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 497.612 kb on - strand, within DZA65_RS02300 at 497.756 kb on + strand, within DZA65_RS02300 at 497.810 kb on + strand at 497.831 kb on + strand at 497.831 kb on + strand at 497.832 kb on - strand at 497.832 kb on - strand at 497.833 kb on + strand at 497.834 kb on - strand at 497.849 kb on - strand at 497.855 kb on - strand at 497.885 kb on + strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.957 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.043 kb on + strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.082 kb on + strand, within DZA65_RS02305 at 498.083 kb on - strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand at 498.169 kb on - strand, within DZA65_RS02305 at 498.224 kb on + strand at 498.224 kb on + strand, within DZA65_RS02305 at 498.237 kb on + strand, within DZA65_RS02305 at 498.238 kb on - strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.266 kb on + strand, within DZA65_RS02305 at 498.289 kb on - strand, within DZA65_RS02305 at 498.324 kb on - strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.345 kb on - strand, within DZA65_RS02305 at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.444 kb on - strand at 498.444 kb on - strand at 498.464 kb on - strand at 498.486 kb on + strand at 498.577 kb on + strand at 498.578 kb on - strand at 498.578 kb on - strand at 498.587 kb on + strand at 498.635 kb on + strand, within DZA65_RS02310 at 498.650 kb on + strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.713 kb on + strand, within DZA65_RS02310 at 498.714 kb on - strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310 at 499.119 kb on + strand at 499.119 kb on + strand at 499.123 kb on - strand at 499.123 kb on - strand at 499.170 kb on - strand at 499.200 kb on + strand at 499.201 kb on - strand at 499.422 kb on + strand at 499.444 kb on + strand at 499.444 kb on + strand at 499.444 kb on + strand at 499.445 kb on - strand at 499.445 kb on - strand at 499.487 kb on + strand at 499.512 kb on + strand at 499.548 kb on + strand at 499.548 kb on + strand at 499.609 kb on + strand at 499.609 kb on + strand at 499.610 kb on - strand at 499.675 kb on + strand at 499.675 kb on + strand at 499.702 kb on + strand at 499.703 kb on - strand at 499.706 kb on + strand at 499.706 kb on + strand at 499.706 kb on + strand at 499.706 kb on + strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.735 kb on + strand at 499.833 kb on + strand at 499.861 kb on - strand at 499.900 kb on + strand at 499.900 kb on + strand at 499.900 kb on + strand at 499.901 kb on - strand at 499.908 kb on - strand at 499.908 kb on - strand at 499.916 kb on + strand at 499.973 kb on - strand at 499.973 kb on - strand at 499.973 kb on - strand at 499.973 kb on - strand at 500.009 kb on - strand, within DZA65_RS02315 at 500.016 kb on + strand, within DZA65_RS02315 at 500.016 kb on + strand, within DZA65_RS02315 at 500.016 kb on + strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.058 kb on + strand, within DZA65_RS02315 at 500.092 kb on + strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.138 kb on + strand, within DZA65_RS02315 at 500.139 kb on - strand, within DZA65_RS02315 at 500.141 kb on + strand, within DZA65_RS02315 at 500.142 kb on - strand, within DZA65_RS02315
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 497,612 - DZA65_RS02300 0.66 -1.8 497,756 + DZA65_RS02300 0.90 -1.5 497,810 + -1.8 497,831 + -0.8 497,831 + -1.8 497,832 - +1.3 497,832 - -1.1 497,833 + -2.2 497,834 - +2.8 497,849 - -0.9 497,855 - -1.7 497,885 + +0.0 497,886 - +1.3 497,886 - -2.6 497,886 - -0.8 497,886 - -0.7 497,886 - -2.3 497,886 - +2.7 497,957 + DZA65_RS02305 0.17 -1.1 497,963 + DZA65_RS02305 0.18 -0.3 497,963 + DZA65_RS02305 0.18 +0.3 497,963 + DZA65_RS02305 0.18 -0.8 497,963 + DZA65_RS02305 0.18 -0.5 497,963 + DZA65_RS02305 0.18 +0.5 497,964 - DZA65_RS02305 0.18 -1.7 497,964 - DZA65_RS02305 0.18 +2.6 498,032 + DZA65_RS02305 0.30 -1.1 498,032 + DZA65_RS02305 0.30 -0.1 498,032 + DZA65_RS02305 0.30 -0.2 498,032 + DZA65_RS02305 0.30 -1.0 498,032 + DZA65_RS02305 0.30 -1.3 498,033 - DZA65_RS02305 0.30 -1.9 498,033 - DZA65_RS02305 0.30 -0.5 498,035 + DZA65_RS02305 0.30 +0.1 498,035 + DZA65_RS02305 0.30 -1.1 498,036 - DZA65_RS02305 0.30 +1.9 498,036 - DZA65_RS02305 0.30 +0.4 498,038 - DZA65_RS02305 0.31 -0.8 498,038 - DZA65_RS02305 0.31 -1.2 498,043 + DZA65_RS02305 0.32 -0.5 498,078 - DZA65_RS02305 0.38 -1.1 498,078 - DZA65_RS02305 0.38 -1.2 498,082 + DZA65_RS02305 0.38 -0.9 498,083 - DZA65_RS02305 0.38 -0.8 498,168 + DZA65_RS02305 0.53 -1.5 498,168 + DZA65_RS02305 0.53 -2.0 498,168 + DZA65_RS02305 0.53 -0.8 498,168 + DZA65_RS02305 0.53 -1.1 498,169 - DZA65_RS02305 0.53 -0.1 498,169 - DZA65_RS02305 0.53 -1.1 498,169 - -0.8 498,169 - DZA65_RS02305 0.53 -0.1 498,224 + +2.1 498,224 + DZA65_RS02305 0.62 +0.2 498,237 + DZA65_RS02305 0.64 -0.8 498,238 - DZA65_RS02305 0.64 -1.9 498,242 + DZA65_RS02305 0.65 -1.5 498,242 + DZA65_RS02305 0.65 -1.7 498,242 + DZA65_RS02305 0.65 +1.3 498,242 + DZA65_RS02305 0.65 -0.8 498,242 + DZA65_RS02305 0.65 -1.5 498,243 - DZA65_RS02305 0.65 -2.1 498,243 - DZA65_RS02305 0.65 -2.1 498,248 + DZA65_RS02305 0.66 -1.5 498,248 + DZA65_RS02305 0.66 +1.5 498,266 + DZA65_RS02305 0.69 +2.8 498,289 - DZA65_RS02305 0.73 -1.7 498,324 - DZA65_RS02305 0.79 -0.1 498,341 + DZA65_RS02305 0.81 +2.7 498,341 + DZA65_RS02305 0.81 +1.8 498,345 - DZA65_RS02305 0.82 +0.9 498,440 + -0.1 498,440 + -0.8 498,440 + -2.4 498,440 + +2.4 498,440 + -2.8 498,440 + -0.8 498,441 - +1.2 498,441 - +0.5 498,441 - -0.1 498,441 - -0.3 498,443 + -1.6 498,443 + +0.4 498,443 + -1.3 498,444 - +1.0 498,444 - -1.7 498,464 - +0.0 498,486 + +1.0 498,577 + -1.5 498,578 - +2.0 498,578 - -1.3 498,587 + -0.5 498,635 + DZA65_RS02310 0.17 +3.1 498,650 + DZA65_RS02310 0.19 +0.2 498,651 - DZA65_RS02310 0.19 -0.3 498,651 - DZA65_RS02310 0.19 +1.4 498,709 + DZA65_RS02310 0.28 +2.1 498,709 + DZA65_RS02310 0.28 +0.5 498,710 - DZA65_RS02310 0.29 -0.8 498,710 - DZA65_RS02310 0.29 -1.0 498,710 - DZA65_RS02310 0.29 +0.5 498,713 + DZA65_RS02310 0.29 +0.5 498,714 - DZA65_RS02310 0.29 +0.5 498,715 + DZA65_RS02310 0.29 +1.7 498,715 + DZA65_RS02310 0.29 +0.3 498,715 + DZA65_RS02310 0.29 +3.7 498,716 - DZA65_RS02310 0.30 -0.8 498,716 - DZA65_RS02310 0.30 -0.5 498,716 - DZA65_RS02310 0.30 +1.0 498,785 + DZA65_RS02310 0.40 -2.1 498,785 + DZA65_RS02310 0.40 -0.1 499,119 + -0.8 499,119 + -2.0 499,123 - +3.4 499,123 - +0.5 499,170 - +2.9 499,200 + +0.3 499,201 - +1.1 499,422 + -0.1 499,444 + -0.5 499,444 + -0.1 499,444 + -0.5 499,445 - +0.3 499,445 - -2.7 499,487 + +0.4 499,512 + +1.5 499,548 + -1.5 499,548 + -1.7 499,609 + +2.4 499,609 + -1.7 499,610 - +2.1 499,675 + -1.3 499,675 + -0.9 499,702 + -0.2 499,703 - -1.8 499,706 + -2.4 499,706 + +1.5 499,706 + +3.1 499,706 + +3.2 499,707 - -0.9 499,707 - +1.9 499,707 - -0.8 499,707 - -1.8 499,707 - -0.7 499,707 - -1.2 499,735 + +0.1 499,833 + +0.0 499,861 - -1.0 499,900 + +1.2 499,900 + -0.1 499,900 + +0.5 499,901 - -0.1 499,908 - +1.5 499,908 - -0.6 499,916 + +1.9 499,973 - -1.3 499,973 - -1.0 499,973 - +0.5 499,973 - -0.8 500,009 - DZA65_RS02315 0.10 -1.1 500,016 + DZA65_RS02315 0.11 -0.2 500,016 + DZA65_RS02315 0.11 -1.5 500,016 + DZA65_RS02315 0.11 -2.0 500,017 - DZA65_RS02315 0.11 +1.1 500,017 - DZA65_RS02315 0.11 -0.8 500,017 - DZA65_RS02315 0.11 -1.3 500,017 - DZA65_RS02315 0.11 +0.7 500,017 - DZA65_RS02315 0.11 -2.4 500,058 + DZA65_RS02315 0.13 -1.1 500,092 + DZA65_RS02315 0.16 -0.8 500,093 - DZA65_RS02315 0.16 +1.5 500,093 - DZA65_RS02315 0.16 -1.8 500,093 - DZA65_RS02315 0.16 -3.2 500,093 - DZA65_RS02315 0.16 +3.3 500,093 - DZA65_RS02315 0.16 -1.0 500,138 + DZA65_RS02315 0.18 -0.7 500,139 - DZA65_RS02315 0.19 -1.3 500,141 + DZA65_RS02315 0.19 +0.5 500,142 - DZA65_RS02315 0.19 -2.1
Or see this region's nucleotide sequence