Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02130 and DZA65_RS02135 overlap by 17 nucleotides DZA65_RS02135 and DZA65_RS02140 are separated by 286 nucleotides
DZA65_RS02130: DZA65_RS02130 - type II toxin-antitoxin system RelE/ParE family toxin, at 468,747 to 469,098
_RS02130
DZA65_RS02135: DZA65_RS02135 - DNA-binding transcriptional regulator, at 469,082 to 469,405
_RS02135
DZA65_RS02140: DZA65_RS02140 - RNA-directed DNA polymerase, at 469,692 to 471,419
_RS02140
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 468.701 kb on + strand at 468.706 kb on + strand at 468.707 kb on - strand at 468.722 kb on - strand at 468.725 kb on + strand at 468.774 kb on - strand at 468.776 kb on + strand at 468.776 kb on + strand at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.942 kb on + strand, within DZA65_RS02130 at 468.954 kb on + strand, within DZA65_RS02130 at 468.954 kb on + strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.053 kb on + strand, within DZA65_RS02130 at 469.053 kb on + strand, within DZA65_RS02130 at 469.059 kb on + strand at 469.060 kb on - strand, within DZA65_RS02130 at 469.204 kb on + strand, within DZA65_RS02135 at 469.205 kb on - strand, within DZA65_RS02135 at 469.237 kb on + strand, within DZA65_RS02135 at 469.237 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.258 kb on - strand, within DZA65_RS02135 at 469.414 kb on + strand at 469.414 kb on + strand at 469.414 kb on + strand at 469.414 kb on + strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.422 kb on + strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.462 kb on + strand at 469.463 kb on - strand at 469.463 kb on - strand at 469.479 kb on + strand at 469.509 kb on + strand at 469.509 kb on + strand at 469.509 kb on + strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.516 kb on + strand at 469.517 kb on - strand at 469.517 kb on - strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.557 kb on - strand at 469.557 kb on - strand at 469.616 kb on + strand at 469.617 kb on - strand at 469.617 kb on - strand at 469.621 kb on + strand at 469.682 kb on - strand at 469.712 kb on + strand at 469.713 kb on - strand at 469.830 kb on - strand at 469.919 kb on + strand, within DZA65_RS02140 at 469.919 kb on + strand, within DZA65_RS02140 at 469.920 kb on - strand, within DZA65_RS02140 at 469.950 kb on + strand, within DZA65_RS02140 at 469.952 kb on + strand, within DZA65_RS02140 at 470.006 kb on + strand, within DZA65_RS02140 at 470.006 kb on + strand, within DZA65_RS02140 at 470.007 kb on - strand, within DZA65_RS02140 at 470.007 kb on - strand, within DZA65_RS02140 at 470.240 kb on - strand, within DZA65_RS02140 at 470.326 kb on + strand, within DZA65_RS02140 at 470.334 kb on - strand, within DZA65_RS02140 at 470.409 kb on + strand, within DZA65_RS02140 at 470.464 kb on + strand, within DZA65_RS02140 at 470.464 kb on + strand, within DZA65_RS02140 at 470.547 kb on + strand, within DZA65_RS02140 at 470.580 kb on - strand, within DZA65_RS02140 at 470.626 kb on - strand, within DZA65_RS02140 at 470.818 kb on - strand, within DZA65_RS02140 at 470.819 kb on + strand, within DZA65_RS02140 at 470.820 kb on - strand, within DZA65_RS02140 at 470.843 kb on + strand, within DZA65_RS02140 at 470.898 kb on + strand, within DZA65_RS02140 at 470.971 kb on - strand, within DZA65_RS02140 at 471.070 kb on - strand, within DZA65_RS02140 at 471.114 kb on - strand, within DZA65_RS02140 at 471.223 kb on - strand, within DZA65_RS02140 at 471.319 kb on - strand at 471.323 kb on - strand at 471.324 kb on + strand at 471.386 kb on + strand at 471.387 kb on - strand at 471.464 kb on + strand at 471.465 kb on - strand at 471.465 kb on - strand at 471.469 kb on + strand at 471.489 kb on - strand at 471.499 kb on + strand at 471.499 kb on + strand at 471.499 kb on + strand at 471.500 kb on - strand at 471.578 kb on - strand at 471.666 kb on + strand at 471.666 kb on + strand at 471.666 kb on + strand at 471.667 kb on - strand at 471.726 kb on + strand at 471.726 kb on + strand at 471.726 kb on + strand at 471.727 kb on - strand at 471.727 kb on - strand at 471.727 kb on - strand at 471.735 kb on + strand at 471.736 kb on - strand at 471.736 kb on - strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.816 kb on - strand at 471.816 kb on - strand at 471.822 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.893 kb on - strand at 471.893 kb on - strand at 471.896 kb on + strand at 471.896 kb on + strand at 471.897 kb on - strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.918 kb on - strand at 471.920 kb on + strand at 471.936 kb on + strand at 471.937 kb on - strand at 471.937 kb on - strand at 471.937 kb on - strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.942 kb on - strand at 471.942 kb on - strand at 471.942 kb on - strand at 471.971 kb on + strand at 471.971 kb on + strand at 471.972 kb on - strand at 471.989 kb on - strand at 471.989 kb on - strand at 472.035 kb on + strand at 472.036 kb on - strand at 472.036 kb on - strand at 472.037 kb on + strand at 472.037 kb on + strand at 472.037 kb on + strand at 472.038 kb on - strand at 472.038 kb on - strand at 472.318 kb on + strand at 472.318 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.412 kb on + strand at 472.412 kb on + strand at 472.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 468,701 + -0.0 468,706 + -1.0 468,707 - -0.0 468,722 - -0.0 468,725 + -0.5 468,774 - -0.8 468,776 + -0.0 468,776 + +1.0 468,814 + DZA65_RS02130 0.19 +0.5 468,814 + DZA65_RS02130 0.19 -0.0 468,814 + DZA65_RS02130 0.19 -0.8 468,814 + DZA65_RS02130 0.19 -0.8 468,814 + DZA65_RS02130 0.19 -1.8 468,814 + DZA65_RS02130 0.19 -1.2 468,814 + DZA65_RS02130 0.19 -1.3 468,814 + DZA65_RS02130 0.19 -0.5 468,814 + DZA65_RS02130 0.19 -0.8 468,815 - DZA65_RS02130 0.19 -1.5 468,815 - DZA65_RS02130 0.19 -1.0 468,815 - DZA65_RS02130 0.19 +2.1 468,815 - DZA65_RS02130 0.19 +1.2 468,815 - DZA65_RS02130 0.19 -0.5 468,815 - DZA65_RS02130 0.19 -1.5 468,815 - DZA65_RS02130 0.19 -0.3 468,815 - DZA65_RS02130 0.19 +1.2 468,815 - DZA65_RS02130 0.19 -0.3 468,913 + DZA65_RS02130 0.47 -3.0 468,913 + DZA65_RS02130 0.47 -2.4 468,913 + DZA65_RS02130 0.47 +1.0 468,913 + DZA65_RS02130 0.47 -0.9 468,914 - DZA65_RS02130 0.47 +2.3 468,914 - DZA65_RS02130 0.47 -1.4 468,914 - DZA65_RS02130 0.47 +2.1 468,914 - DZA65_RS02130 0.47 -1.4 468,914 - DZA65_RS02130 0.47 -1.3 468,942 + DZA65_RS02130 0.55 +2.5 468,954 + DZA65_RS02130 0.59 -2.1 468,954 + DZA65_RS02130 0.59 +1.4 468,955 - DZA65_RS02130 0.59 -0.5 468,955 - DZA65_RS02130 0.59 +0.5 468,955 - DZA65_RS02130 0.59 -2.2 469,020 + DZA65_RS02130 0.78 -0.5 469,020 + DZA65_RS02130 0.78 -0.8 469,020 + DZA65_RS02130 0.78 -0.8 469,020 + DZA65_RS02130 0.78 -0.0 469,021 - DZA65_RS02130 0.78 -0.8 469,021 - DZA65_RS02130 0.78 -1.3 469,021 - DZA65_RS02130 0.78 -0.8 469,042 - DZA65_RS02130 0.84 +0.5 469,042 - DZA65_RS02130 0.84 +1.5 469,042 - DZA65_RS02130 0.84 -2.0 469,053 + DZA65_RS02130 0.87 -0.0 469,053 + DZA65_RS02130 0.87 +1.7 469,059 + +3.9 469,060 - DZA65_RS02130 0.89 -1.6 469,204 + DZA65_RS02135 0.38 +1.3 469,205 - DZA65_RS02135 0.38 +4.1 469,237 + DZA65_RS02135 0.48 +2.4 469,237 + DZA65_RS02135 0.48 -0.6 469,257 + DZA65_RS02135 0.54 -1.7 469,257 + DZA65_RS02135 0.54 +0.5 469,257 + DZA65_RS02135 0.54 -1.8 469,257 + DZA65_RS02135 0.54 -0.5 469,258 - DZA65_RS02135 0.54 +1.5 469,414 + -0.0 469,414 + -2.3 469,414 + -0.5 469,414 + -1.5 469,415 - +2.5 469,415 - -1.5 469,415 - +1.5 469,415 - +1.3 469,415 - +0.5 469,415 - -1.3 469,415 - -1.3 469,422 + +0.5 469,423 - -0.9 469,423 - +2.6 469,423 - -1.4 469,423 - +2.0 469,462 + -1.6 469,463 - +1.8 469,463 - +0.6 469,479 + -1.1 469,509 + -1.9 469,509 + -1.3 469,509 + -0.6 469,510 - +0.5 469,510 - +0.1 469,510 - +2.3 469,510 - -1.3 469,510 - -0.7 469,510 - -0.8 469,516 + +0.5 469,517 - -0.9 469,517 - -0.8 469,556 + -0.8 469,556 + -1.0 469,556 + -0.9 469,556 + -0.5 469,556 + +0.2 469,556 + +2.1 469,556 + -1.5 469,557 - +0.2 469,557 - -1.4 469,616 + +1.7 469,617 - -0.5 469,617 - +1.3 469,621 + -0.8 469,682 - +1.9 469,712 + +0.4 469,713 - +1.1 469,830 - +2.4 469,919 + DZA65_RS02140 0.13 -2.0 469,919 + DZA65_RS02140 0.13 +4.7 469,920 - DZA65_RS02140 0.13 -1.3 469,950 + DZA65_RS02140 0.15 -0.8 469,952 + DZA65_RS02140 0.15 -1.9 470,006 + DZA65_RS02140 0.18 -0.5 470,006 + DZA65_RS02140 0.18 -1.0 470,007 - DZA65_RS02140 0.18 -0.8 470,007 - DZA65_RS02140 0.18 +0.1 470,240 - DZA65_RS02140 0.32 +1.3 470,326 + DZA65_RS02140 0.37 -1.4 470,334 - DZA65_RS02140 0.37 +0.0 470,409 + DZA65_RS02140 0.41 +1.3 470,464 + DZA65_RS02140 0.45 -1.7 470,464 + DZA65_RS02140 0.45 -0.0 470,547 + DZA65_RS02140 0.49 -1.4 470,580 - DZA65_RS02140 0.51 +2.5 470,626 - DZA65_RS02140 0.54 -2.4 470,818 - DZA65_RS02140 0.65 +1.7 470,819 + DZA65_RS02140 0.65 +0.3 470,820 - DZA65_RS02140 0.65 +1.2 470,843 + DZA65_RS02140 0.67 +1.8 470,898 + DZA65_RS02140 0.70 +0.7 470,971 - DZA65_RS02140 0.74 +0.1 471,070 - DZA65_RS02140 0.80 -1.3 471,114 - DZA65_RS02140 0.82 -0.0 471,223 - DZA65_RS02140 0.89 +2.9 471,319 - -2.5 471,323 - +3.5 471,324 + -1.0 471,386 + +3.3 471,387 - -1.6 471,464 + -2.4 471,465 - -1.6 471,465 - -0.9 471,469 + -1.0 471,489 - -0.3 471,499 + +0.2 471,499 + -1.2 471,499 + +0.5 471,500 - -2.0 471,578 - +1.2 471,666 + +0.5 471,666 + -2.3 471,666 + -1.3 471,667 - -1.5 471,726 + -0.6 471,726 + -1.3 471,726 + -0.5 471,727 - -1.0 471,727 - -1.9 471,727 - -1.5 471,735 + -2.0 471,736 - -0.0 471,736 - +1.2 471,815 + -0.5 471,815 + -0.9 471,815 + -3.1 471,815 + +2.1 471,815 + -0.8 471,815 + -0.5 471,815 + -0.0 471,815 + +2.4 471,816 - -0.3 471,816 - -0.4 471,822 + +1.0 471,892 + +1.7 471,892 + +0.5 471,892 + +0.9 471,892 + -0.3 471,892 + -1.0 471,892 + -2.6 471,893 - +0.5 471,893 - -0.5 471,896 + -3.0 471,896 + +1.0 471,897 - +0.8 471,917 + -0.9 471,917 + -0.0 471,917 + -1.6 471,917 + +0.6 471,917 + -3.5 471,918 - -0.9 471,920 + +0.3 471,936 + -0.6 471,937 - +2.4 471,937 - +1.2 471,937 - +0.1 471,941 + +0.2 471,941 + +1.1 471,941 + -0.8 471,941 + -0.2 471,941 + +0.3 471,941 + -1.6 471,942 - -3.0 471,942 - +0.5 471,942 - +2.7 471,971 + -0.8 471,971 + +0.5 471,972 - -1.7 471,989 - +1.8 471,989 - -0.8 472,035 + -1.6 472,036 - -1.0 472,036 - -0.0 472,037 + -1.0 472,037 + -0.8 472,037 + -0.9 472,038 - +2.5 472,038 - -1.5 472,318 + +1.5 472,318 + -1.3 472,347 + -0.7 472,347 + -1.5 472,347 + +0.6 472,347 + -1.0 472,347 + -1.3 472,347 + -2.0 472,347 + +2.8 472,347 + -0.0 472,347 + -0.6 472,347 + +1.5 472,347 + -0.5 472,348 - +0.2 472,348 - +0.2 472,348 - +5.3 472,348 - -0.8 472,348 - -1.5 472,348 - +0.2 472,348 - -0.5 472,348 - -1.0 472,348 - -0.0 472,348 - -1.5 472,348 - +4.6 472,412 + +1.4 472,412 + +1.2 472,412 + -1.5
Or see this region's nucleotide sequence