Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20175

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,370,526	+		DZA65_RS20165	0.83	-1.4
4,370,526	+		DZA65_RS20165	0.83	-1.0
4,370,563	+		DZA65_RS20165	0.84	+5.5
4,370,563	+		DZA65_RS20165	0.84	+1.8
4,370,563	+		DZA65_RS20165	0.84	+0.6
4,370,564	-		DZA65_RS20165	0.84	-1.2
4,370,617	-		DZA65_RS20165	0.86	+2.0
4,370,638	+		DZA65_RS20165	0.86	-0.4
4,370,638	+		DZA65_RS20165	0.86	+0.6
4,370,638	+		DZA65_RS20165	0.86	-1.4
4,370,638	+		DZA65_RS20165	0.86	-1.9
4,370,638	+		DZA65_RS20165	0.86	-1.7
4,370,639	-		DZA65_RS20165	0.86	-0.4
4,370,639	-		DZA65_RS20165	0.86	-1.4
4,370,848	+				-1.7
4,370,912	-				-2.0
4,370,912	-				-1.0
4,370,912	-				-0.6
4,370,981	+				-1.7
4,371,024	+				-0.0
4,371,024	+				+2.6
4,371,024	+				-2.1
4,371,024	+				-0.0
4,371,025	-				-0.4
4,371,025	-				-1.0
4,371,039	+				-0.0
4,371,090	+				+1.4
4,371,091	-				-0.0
4,371,332	+				+1.1
4,371,332	+				-0.9
4,371,337	+				+1.7
4,371,337	+				-0.3
4,371,337	+				+0.6
4,371,337	+				-0.0
4,371,337	+				+1.3
4,371,337	+				-0.0
4,371,337	+				+2.6
4,371,337	+				+0.6
4,371,337	+				+0.6
4,371,337	+				-0.8
4,371,337	+				-0.0
4,371,337	+				+0.1
4,371,337	+				-1.2
4,371,337	+				+0.3
4,371,337	+				-0.9
4,371,337	+				+1.6
4,371,337	+				-0.0
4,371,337	+				+1.4
4,371,337	+				-0.5
4,371,337	+				-1.4
4,371,337	+				+0.3
4,371,337	+				-1.4
4,371,338	-				-1.2
4,371,338	-				-0.4
4,371,338	-				+0.0
4,371,338	-				+0.6
4,371,338	-				-1.1
4,371,338	-				-1.7
4,371,338	-				-1.0
4,371,338	-				-0.6
4,371,338	-				-1.4
4,371,338	-				-0.4
4,371,338	-				+0.3
4,371,338	-				-1.8
4,371,338	-				-1.6
4,371,338	-				+0.3
4,371,338	-				-0.4
4,371,338	-				+1.0
4,371,338	-				-1.3
4,371,338	-				-1.3
4,371,338	-				-0.4
4,371,338	-				-0.4
4,371,338	-				-0.4
4,371,338	-				+1.4
4,371,338	-				-0.4
4,371,338	-				-0.7
4,371,357	+				-2.7
4,371,357	+				-2.0
4,371,357	+				-0.7
4,371,357	+				-0.6
4,371,357	+				+0.6
4,371,358	-				+1.3
4,371,358	-				+0.1
4,371,358	-				-0.0
4,371,358	-				-2.1
4,371,415	+				+2.9
4,371,415	+				+0.6
4,371,415	+				+0.4
4,371,415	+				-0.5
4,371,415	+				-0.9
4,371,415	+				-0.4
4,371,415	+				-0.0
4,371,416	-				+0.9
4,371,416	-				-0.4
4,371,416	-				-0.2
4,371,419	-				+0.6
4,372,497	+				+1.3
4,372,498	-				-1.0
4,372,498	-				+1.9
4,372,501	+				+0.6
4,372,501	+				-1.6
4,372,501	+				-1.0
4,372,502	-				-0.4
4,372,502	-				+2.6
4,372,502	-				-1.0
4,372,502	-				+1.6
4,372,502	-				+0.2
4,372,512	+				+0.3
4,372,512	+				+1.9
4,372,513	-				-1.2
4,372,518	+				-2.6
4,372,519	-				+0.6
4,372,523	+				+0.1
4,372,524	-				-1.2
4,372,542	+				-2.6
4,372,543	-				-1.3
4,372,589	+				-2.0
4,372,589	+				+1.3
4,372,589	+				+0.6
4,372,590	-				-0.0
4,372,609	+				-2.7
4,372,610	-				+1.0
4,372,610	-				+1.0
4,372,610	-				-1.1
4,372,639	-				-0.0
4,372,652	+				-0.7
4,372,652	+				-1.3
4,372,698	+				-2.0
4,372,699	-				+0.3
4,372,699	-				-0.9
4,372,699	-				+1.0
4,372,708	+				-1.0
4,372,710	+				+0.4
4,372,753	+				-0.4
4,372,754	-				+0.2
4,372,758	-				-1.0
4,372,758	-				-1.9
4,372,810	+				-0.2
4,372,811	-				+0.9
4,372,862	+				-0.4
4,372,862	+				-0.4
4,372,863	-				-1.0
4,372,894	-				-1.6
4,372,905	-				-0.2
4,372,935	-				-1.2
4,373,000	-				-0.0
4,373,064	+		DZA65_RS20180	0.10	-0.4
4,373,065	-		DZA65_RS20180	0.10	-0.2
4,373,126	+		DZA65_RS20180	0.14	+0.6
4,373,126	+		DZA65_RS20180	0.14	-0.7
4,373,126	+		DZA65_RS20180	0.14	-1.0
4,373,126	+		DZA65_RS20180	0.14	-1.0
4,373,126	+		DZA65_RS20180	0.14	-0.9
4,373,126	+		DZA65_RS20180	0.14	-0.7
4,373,126	+		DZA65_RS20180	0.14	-2.1
4,373,126	+		DZA65_RS20180	0.14	-1.0
4,373,127	-		DZA65_RS20180	0.14	-0.0
4,373,127	-		DZA65_RS20180	0.14	-0.0
4,373,127	-		DZA65_RS20180	0.14	-0.4
4,373,127	-		DZA65_RS20180	0.14	-0.0
4,373,127	-		DZA65_RS20180	0.14	+1.0
4,373,127	-		DZA65_RS20180	0.14	-1.2
4,373,127	-		DZA65_RS20180	0.14	+3.0
4,373,127	-		DZA65_RS20180	0.14	+1.2
4,373,127	-		DZA65_RS20180	0.14	+1.6
4,373,127	-		DZA65_RS20180	0.14	+0.3
4,373,127	-		DZA65_RS20180	0.14	-0.3
4,373,129	+		DZA65_RS20180	0.14	+1.6
4,373,129	+		DZA65_RS20180	0.14	-0.4
4,373,129	+		DZA65_RS20180	0.14	-1.7
4,373,129	+		DZA65_RS20180	0.14	-1.0
4,373,129	+		DZA65_RS20180	0.14	+1.0
4,373,130	-		DZA65_RS20180	0.14	-0.4
4,373,130	-		DZA65_RS20180	0.14	-0.4
4,373,130	-		DZA65_RS20180	0.14	-2.5
4,373,130	-		DZA65_RS20180	0.14	-1.0
4,373,130	-		DZA65_RS20180	0.14	+0.6
4,373,130	-		DZA65_RS20180	0.14	-0.0
4,373,355	-		DZA65_RS20180	0.26	-0.4
4,373,361	+		DZA65_RS20180	0.27	+1.8
4,373,406	+		DZA65_RS20180	0.29	-1.9
4,373,406	+		DZA65_RS20180	0.29	-0.2
4,373,406	+		DZA65_RS20180	0.29	+0.8
4,373,406	+		DZA65_RS20180	0.29	-1.4
4,373,406	+		DZA65_RS20180	0.29	-1.1
4,373,406	+		DZA65_RS20180	0.29	-0.1
4,373,407	-		DZA65_RS20180	0.29	-0.7
4,373,407	-		DZA65_RS20180	0.29	-1.4
4,373,407	-		DZA65_RS20180	0.29	-1.0
4,373,407	-		DZA65_RS20180	0.29	-0.7
4,373,407	-		DZA65_RS20180	0.29	-0.0
4,373,407	-		DZA65_RS20180	0.29	+0.9