Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19795

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,283,195	+		DZA65_RS19785	0.68	-1.8
4,283,195	+		DZA65_RS19785	0.68	-0.8
4,283,195	+		DZA65_RS19785	0.68	-0.8
4,283,195	+		DZA65_RS19785	0.68	-0.4
4,283,196	-		DZA65_RS19785	0.69	-1.7
4,283,207	+		DZA65_RS19785	0.70	-0.7
4,283,208	-		DZA65_RS19785	0.70	+1.8
4,283,217	+		DZA65_RS19785	0.71	+0.3
4,283,276	+		DZA65_RS19785	0.79	-0.4
4,283,277	-		DZA65_RS19785	0.79	-0.5
4,283,277	-		DZA65_RS19785	0.79	+1.2
4,283,277	-		DZA65_RS19785	0.79	-1.3
4,283,414	+				-0.7
4,283,414	+				-1.2
4,283,414	+				+1.2
4,283,414	+				-0.2
4,283,414	+				-0.6
4,283,415	-				-0.7
4,283,415	-				+1.3
4,283,415	-				+0.4
4,283,415	-				+0.0
4,283,415	-				-0.4
4,283,415	-				-1.5
4,283,415	-				-0.4
4,283,415	-				-1.4
4,283,416	+				+0.9
4,283,416	+				+0.0
4,283,417	-				+0.0
4,283,417	-				+0.0
4,283,417	-				+0.3
4,283,432	+				+0.0
4,283,432	+				+0.6
4,283,432	+				-1.0
4,283,432	+				+0.2
4,283,432	+				-0.4
4,283,432	+				+0.3
4,283,432	+				-0.1
4,283,433	-				+0.0
4,283,433	-				+0.2
4,283,433	-				-1.0
4,283,433	-				-2.1
4,283,433	-				+0.3
4,283,433	-				+1.6
4,283,433	-				+0.6
4,283,433	-				-1.0
4,283,443	+				-1.5
4,283,444	-				-1.0
4,283,444	-				-1.2
4,283,444	-				+0.0
4,283,444	-				-0.5
4,283,444	-				+1.2
4,283,444	-				+0.0
4,283,473	+				-1.0
4,283,473	+				+0.1
4,283,473	+				-0.8
4,283,473	+				-0.5
4,283,473	+				-0.2
4,283,474	-				+1.1
4,283,474	-				+0.6
4,283,474	-				+1.4
4,283,479	+				-1.0
4,283,480	-				-1.1
4,283,480	-				-0.4
4,283,491	+				-0.4
4,283,491	+				-1.4
4,283,491	+				+0.3
4,283,491	+				+0.6
4,283,491	+				+1.0
4,283,491	+				-1.4
4,283,492	-				+0.0
4,283,492	-				+1.3
4,283,492	-				-0.4
4,283,492	-				+2.1
4,283,499	+				+1.6
4,283,500	-				+1.1
4,283,500	-				-1.2
4,283,500	-				+0.0
4,283,500	-				-1.7
4,283,500	-				+0.0
4,283,500	-				+0.3
4,283,512	+				-0.4
4,283,512	+				-1.0
4,283,513	-				-0.7
4,283,514	+				-1.0
4,283,514	+				+1.8
4,283,514	+				-2.5
4,283,514	+				-0.4
4,283,515	-				-0.2
4,283,515	-				-1.7
4,283,515	-				+0.1
4,283,515	-				+0.0
4,283,515	-				-0.3
4,283,521	+				+1.6
4,283,521	+				+0.2
4,283,521	+				+0.0
4,283,521	+				-2.8
4,283,521	+				+0.2
4,283,521	+				+2.0
4,283,521	+				-0.2
4,283,522	-				-1.0
4,283,522	-				+3.9
4,283,535	+				-0.3
4,283,535	+				-0.2
4,283,535	+				-0.2
4,283,535	+				-1.8
4,283,535	+				+0.3
4,283,535	+				-2.0
4,283,535	+				+0.3
4,283,535	+				-0.4
4,283,535	+				-1.0
4,283,535	+				-0.5
4,283,536	-				+2.6
4,283,536	-				-1.8
4,283,536	-				-2.1
4,283,536	-				-1.5
4,283,536	-				-1.0
4,283,536	-				+1.6
4,283,536	-				+0.0
4,283,536	-				-1.5
4,283,536	-				-1.5
4,283,536	-				+0.2
4,283,536	-				+0.0
4,283,536	-				+1.0
4,283,538	+				-1.6
4,283,538	+				+0.6
4,283,539	-				-0.5
4,283,539	-				-0.2
4,283,549	+				-1.4
4,283,549	+				-1.5
4,283,549	+				+0.0
4,283,549	+				+0.2
4,283,550	-				+2.4
4,283,551	+				-0.7
4,283,551	+				+0.9
4,283,552	-				-1.2
4,283,552	-				-1.2
4,283,552	-				-1.4
4,283,552	-				+0.2
4,283,552	-				+0.0
4,283,552	-				-0.2
4,283,603	+		DZA65_RS19790	0.12	+0.4
4,283,604	-		DZA65_RS19790	0.13	-2.3
4,283,675	+		DZA65_RS19790	0.29	-1.2
4,283,675	+		DZA65_RS19790	0.29	+1.0
4,283,675	+		DZA65_RS19790	0.29	+0.6
4,283,675	+		DZA65_RS19790	0.29	+2.2
4,283,675	+		DZA65_RS19790	0.29	-1.3
4,283,676	-		DZA65_RS19790	0.29	-1.0
4,283,676	-		DZA65_RS19790	0.29	+0.6
4,283,676	-		DZA65_RS19790	0.29	+0.5
4,283,676	-		DZA65_RS19790	0.29	-1.5
4,283,676	-		DZA65_RS19790	0.29	+0.8
4,283,676	-		DZA65_RS19790	0.29	-0.4
4,283,676	-		DZA65_RS19790	0.29	-1.0
4,283,718	+		DZA65_RS19790	0.38	-3.1
4,283,718	+		DZA65_RS19790	0.38	-0.8
4,283,806	+		DZA65_RS19790	0.58	-1.3
4,283,806	+		DZA65_RS19790	0.58	+0.0
4,283,806	+		DZA65_RS19790	0.58	-1.5
4,283,806	+		DZA65_RS19790	0.58	-0.8
4,283,806	+		DZA65_RS19790	0.58	+1.6
4,283,806	+		DZA65_RS19790	0.58	-0.2
4,283,806	+		DZA65_RS19790	0.58	-2.0
4,283,806	+				-0.4
4,283,806	+		DZA65_RS19790	0.58	+0.3
4,283,807	-		DZA65_RS19790	0.58	+0.9
4,283,807	-		DZA65_RS19790	0.58	+0.7
4,283,807	-		DZA65_RS19790	0.58	+0.6
4,283,807	-		DZA65_RS19790	0.58	+0.0
4,283,857	-		DZA65_RS19790	0.70	+2.4
4,283,923	+		DZA65_RS19790	0.84	+0.4
4,283,923	+		DZA65_RS19790	0.84	+0.6
4,283,968	-				+0.6
4,284,027	+				-0.5
4,284,031	-				+1.3
4,284,031	-				+0.8
4,284,031	-				-0.7
4,284,031	-				-2.8
4,284,031	-				-1.0
4,284,087	+				-0.4
4,284,088	-				+2.6
4,284,109	+				+1.8
4,284,109	+				+0.1
4,284,109	+				+3.2
4,284,109	+				+1.6
4,284,110	-				-2.5
4,284,110	-				-2.4
4,284,110	-				+0.6
4,284,110	-				+0.4
4,284,111	+				-1.4
4,284,111	+				-1.7
4,284,111	+				-0.7
4,284,111	+				-0.4
4,284,111	+				-0.4
4,284,111	+				-0.1
4,284,111	+				+0.9
4,284,111	+				+0.9
4,284,111	+				-0.1
4,284,111	+				+0.0
4,284,111	+				+2.3
4,284,111	+				+0.6
4,284,111	+				-0.5
4,284,111	+				-1.2
4,284,111	+				+1.6
4,284,111	+				-1.2
4,284,112	-				+0.5
4,284,112	-				+3.6
4,284,112	-				+2.3
4,284,112	-				+0.8
4,284,112	-				+2.2
4,284,112	-				+2.9
4,284,112	-				-0.5
4,284,112	-				+0.6
4,284,112	-				-0.5
4,284,112	-				+0.6
4,284,112	-				+0.3
4,284,112	-				+1.5
4,284,112	-				+0.6
4,284,128	-				+1.5
4,284,128	-				+0.0
4,284,128	-				-1.1
4,284,136	-				-0.4
4,284,146	+				-0.7
4,284,147	-				-1.3
4,284,147	-				-3.0
4,284,153	+				+1.0
4,284,153	+				-1.7
4,284,153	+				+2.6
4,284,154	-				+0.0
4,284,154	-				+0.0
4,284,154	-				-0.2
4,284,208	+				-1.5
4,284,209	-				+1.1
4,284,209	-				+0.3
4,284,238	+				-1.8
4,284,330	+		DZA65_RS19795	0.20	-1.4
4,284,330	+		DZA65_RS19795	0.20	-0.8
4,284,331	-		DZA65_RS19795	0.20	+0.6
4,284,360	+		DZA65_RS19795	0.23	-1.4
4,284,360	+		DZA65_RS19795	0.23	-2.1
4,284,360	+		DZA65_RS19795	0.23	+1.4
4,284,361	-		DZA65_RS19795	0.23	+0.8
4,284,361	-		DZA65_RS19795	0.23	-0.9
4,284,361	-		DZA65_RS19795	0.23	-0.4
4,284,361	-		DZA65_RS19795	0.23	+0.6
4,284,361	-		DZA65_RS19795	0.23	-0.3
4,284,361	-		DZA65_RS19795	0.23	-1.4
4,284,361	-		DZA65_RS19795	0.23	-1.2
4,284,361	-		DZA65_RS19795	0.23	+0.6
4,284,361	-		DZA65_RS19795	0.23	+0.3
4,284,361	-		DZA65_RS19795	0.23	-2.4
4,284,447	+		DZA65_RS19795	0.32	+0.5
4,284,447	+		DZA65_RS19795	0.32	+0.4
4,284,474	+		DZA65_RS19795	0.35	+3.5
4,284,474	+		DZA65_RS19795	0.35	-1.4
4,284,474	+		DZA65_RS19795	0.35	-1.8
4,284,474	+		DZA65_RS19795	0.35	-0.2
4,284,474	+		DZA65_RS19795	0.35	+0.0
4,284,474	+		DZA65_RS19795	0.35	+1.4
4,284,474	+		DZA65_RS19795	0.35	+1.8
4,284,475	-		DZA65_RS19795	0.35	-0.7
4,284,475	-		DZA65_RS19795	0.35	+0.0
4,284,475	-		DZA65_RS19795	0.35	+1.6
4,284,480	+		DZA65_RS19795	0.36	+1.4
4,284,480	+		DZA65_RS19795	0.36	+0.5
4,284,481	-		DZA65_RS19795	0.36	+0.6
4,284,482	+		DZA65_RS19795	0.36	-0.5
4,284,482	+		DZA65_RS19795	0.36	+2.6
4,284,483	-		DZA65_RS19795	0.36	-1.5
4,284,483	-		DZA65_RS19795	0.36	+0.0
4,284,483	-		DZA65_RS19795	0.36	+1.5
4,284,507	-		DZA65_RS19795	0.39	-0.5
4,284,507	-		DZA65_RS19795	0.39	-1.8
4,284,507	-		DZA65_RS19795	0.39	-1.2
4,284,616	-		DZA65_RS19795	0.51	+0.9
4,284,616	-		DZA65_RS19795	0.51	-0.7
4,284,629	+		DZA65_RS19795	0.52	-0.8
4,284,630	-		DZA65_RS19795	0.52	-0.4
4,284,630	-		DZA65_RS19795	0.52	-1.4
4,284,630	-		DZA65_RS19795	0.52	-2.0
4,284,660	+		DZA65_RS19795	0.55	-2.4
4,284,660	+		DZA65_RS19795	0.55	-1.2
4,284,661	-		DZA65_RS19795	0.56	+1.0
4,284,664	+		DZA65_RS19795	0.56	-0.5
4,284,664	+		DZA65_RS19795	0.56	+1.6
4,284,664	+		DZA65_RS19795	0.56	-1.5
4,284,664	+		DZA65_RS19795	0.56	-1.5
4,284,665	-		DZA65_RS19795	0.56	-0.4
4,284,665	-		DZA65_RS19795	0.56	-0.7
4,284,665	-		DZA65_RS19795	0.56	-1.5
4,284,701	+		DZA65_RS19795	0.60	+0.6
4,284,702	-		DZA65_RS19795	0.60	+1.3
4,284,793	+		DZA65_RS19795	0.70	+0.6
4,284,793	+		DZA65_RS19795	0.70	+0.2
4,284,793	+		DZA65_RS19795	0.70	+0.5
4,284,794	-		DZA65_RS19795	0.70	+0.2
4,284,794	-		DZA65_RS19795	0.70	-0.5
4,284,878	+		DZA65_RS19795	0.79	+1.6
4,284,878	+		DZA65_RS19795	0.79	+2.1
4,284,878	+		DZA65_RS19795	0.79	+1.0
4,284,878	+		DZA65_RS19795	0.79	+0.6
4,284,879	-				+1.2
4,284,879	-		DZA65_RS19795	0.79	-0.4
4,284,879	-		DZA65_RS19795	0.79	-1.8
4,284,879	-		DZA65_RS19795	0.79	+0.1
4,284,879	-		DZA65_RS19795	0.79	-0.7
4,284,993	+				+0.5
4,284,993	+				+0.6
4,284,994	-				+1.1
4,285,049	+				+1.8
4,285,049	+				-0.7
4,285,050	-				+0.3
4,285,097	+				+0.6
4,285,097	+				-2.1
4,285,097	+				-0.7
4,285,098	-				+0.3
4,285,098	-				+0.7
4,285,098	-				+0.0
4,285,098	-				-1.4
4,285,104	+				+2.9
4,285,133	-				+0.0
4,285,145	-				-0.4
4,285,145	-				-0.4
4,285,207	+				-0.4
4,285,207	+				-1.2
4,285,207	+				-0.1
4,285,207	+				-2.0
4,285,207	+				+2.2
4,285,207	+				-1.2
4,285,207	+				-0.3
4,285,207	+				+0.4
4,285,207	+				+0.1
4,285,207	+				+2.8
4,285,207	+				+0.6
4,285,208	-				+1.8
4,285,208	-				-0.4
4,285,208	-				-2.9
4,285,208	-				+0.0
4,285,208	-				+2.1
4,285,208	-				-0.7
4,285,208	-				-0.7
4,285,208	-				-1.2
4,285,208	-				+2.3
4,285,208	-				+0.5
4,285,208	-				+0.7
4,285,208	-				+0.2
4,285,208	-				-1.1
4,285,226	+				-1.0
4,285,227	-				+0.5
4,285,235	+				+2.5
4,285,235	+				+1.2
4,285,236	-				-0.7
4,285,236	-				-0.4
4,285,236	-				+2.0
4,285,236	-				-0.1
4,285,287	-				-1.2
4,285,302	+				+0.6
4,285,302	+				+1.6
4,285,302	+				-0.7
4,285,302	+				-0.4
4,285,303	-				+0.6
4,285,303	-				+1.0
4,285,303	-				+1.6
4,285,305	+				-1.4
4,285,305	+				-0.7
4,285,306	-				+0.3
4,285,306	-				-1.4
4,285,306	-				-1.2
4,285,318	+				-1.6
4,285,318	+				-1.0
4,285,319	-				-1.9
4,285,319	-				+1.4
4,285,321	+				+0.6
4,285,321	+				+1.0
4,285,321	+				+1.6
4,285,322	-				+0.0
4,285,322	-				-1.0
4,285,322	-				-0.4
4,285,322	-				-1.0
4,285,334	+				+2.4
4,285,334	+				-1.7
4,285,335	-				-0.6
4,285,335	-				+2.6
4,285,335	-				-1.2
4,285,335	-				-1.2
4,285,337	+				+1.0
4,285,337	+				+1.0
4,285,337	+				-1.0
4,285,337	+				+0.6
4,285,338	-				+0.5
4,285,338	-				-1.5
4,285,393	+				-0.7
4,285,393	+				-0.7
4,285,393	+				+1.8
4,285,393	+				+0.9
4,285,393	+				-0.7
4,285,393	+				+0.5
4,285,394	-				-1.0
4,285,414	+				-0.4
4,285,415	-				-0.3
4,285,441	+				-1.4
4,285,441	+				-0.7
4,285,441	+				+1.0
4,285,442	-				-1.8
4,285,442	-				+0.1
4,285,442	-				-0.4
4,285,442	-				-0.4
4,285,503	+				-0.2
4,285,545	+				-1.0
4,285,545	+				-0.5
4,285,545	+				-0.7
4,285,545	+				-1.8
4,285,545	+				-1.7
4,285,545	+				+1.2
4,285,546	-				-1.2
4,285,546	-				-1.2
4,285,546	-				+0.0
4,285,546	-				+1.2
4,285,546	-				-1.5
4,285,546	-				-1.0
4,285,546	-				-0.4
4,285,546	-				+0.4
4,285,546	-				-0.3
4,285,564	+				+0.4
4,285,564	+				-1.2
4,285,565	-				+0.6
4,285,586	+				-1.7
4,285,586	+				+1.0
4,285,586	+				+0.3
4,285,591	+				-0.4
4,285,592	-				-0.4
4,285,760	+		DZA65_RS19800	0.17	-0.7
4,285,760	+		DZA65_RS19800	0.17	-0.1
4,285,760	+		DZA65_RS19800	0.17	-0.4
4,285,760	+		DZA65_RS19800	0.17	+0.3
4,285,761	-		DZA65_RS19800	0.17	-0.7
4,285,761	-		DZA65_RS19800	0.17	-1.0
4,285,761	-		DZA65_RS19800	0.17	-0.3
4,285,761	-		DZA65_RS19800	0.17	-0.7
4,285,819	-		DZA65_RS19800	0.22	+0.9
4,285,931	+		DZA65_RS19800	0.31	+1.1
4,285,931	+		DZA65_RS19800	0.31	+0.1
4,285,931	+		DZA65_RS19800	0.31	-0.7
4,285,931	+		DZA65_RS19800	0.31	+0.0
4,285,932	-		DZA65_RS19800	0.31	+1.2
4,285,935	+		DZA65_RS19800	0.32	-0.5
4,285,935	+		DZA65_RS19800	0.32	-0.7
4,285,936	-		DZA65_RS19800	0.32	-1.4
4,285,936	-		DZA65_RS19800	0.32	-1.4
4,285,936	-		DZA65_RS19800	0.32	+0.2
4,286,023	+		DZA65_RS19800	0.39	+3.6
4,286,023	+		DZA65_RS19800	0.39	-1.4
4,286,023	+		DZA65_RS19800	0.39	-1.7
4,286,023	+		DZA65_RS19800	0.39	+0.6
4,286,024	-		DZA65_RS19800	0.39	-0.7
4,286,024	-		DZA65_RS19800	0.39	+1.8
4,286,024	-		DZA65_RS19800	0.39	-1.3
4,286,024	-		DZA65_RS19800	0.39	-0.7
4,286,024	-		DZA65_RS19800	0.39	-0.7
4,286,024	-		DZA65_RS19800	0.39	+0.9