Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS18995 and DZA65_RS19000 are separated by 13 nucleotides DZA65_RS19000 and DZA65_RS19005 are separated by 132 nucleotides
DZA65_RS18995: DZA65_RS18995 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 4,105,123 to 4,106,985
_RS18995
DZA65_RS19000: DZA65_RS19000 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 4,106,999 to 4,109,662
_RS19000
DZA65_RS19005: DZA65_RS19005 - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 4,109,795 to 4,110,559
_RS19005
Position (kb) 4106
4107
4108
4109
4110 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4107.001 kb on - strand at 4107.001 kb on - strand at 4107.001 kb on - strand at 4107.001 kb on - strand at 4107.001 kb on - strand at 4107.001 kb on - strand at 4109.797 kb on - strand at 4109.842 kb on + strand at 4109.843 kb on - strand at 4109.843 kb on - strand at 4109.843 kb on - strand at 4109.843 kb on - strand at 4109.843 kb on - strand at 4109.843 kb on - strand at 4109.843 kb on - strand at 4109.843 kb on - strand at 4109.868 kb on - strand at 4109.868 kb on - strand at 4109.868 kb on - strand at 4109.868 kb on - strand at 4109.868 kb on - strand at 4109.963 kb on - strand, within DZA65_RS19005 at 4109.995 kb on - strand, within DZA65_RS19005 at 4110.069 kb on - strand, within DZA65_RS19005 at 4110.069 kb on - strand, within DZA65_RS19005 at 4110.069 kb on - strand, within DZA65_RS19005 at 4110.074 kb on - strand, within DZA65_RS19005 at 4110.074 kb on - strand, within DZA65_RS19005 at 4110.103 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.220 kb on - strand, within DZA65_RS19005 at 4110.222 kb on + strand, within DZA65_RS19005 at 4110.223 kb on - strand, within DZA65_RS19005 at 4110.223 kb on - strand, within DZA65_RS19005 at 4110.223 kb on - strand, within DZA65_RS19005 at 4110.223 kb on - strand, within DZA65_RS19005 at 4110.223 kb on - strand, within DZA65_RS19005 at 4110.553 kb on - strand at 4110.599 kb on - strand at 4110.599 kb on - strand at 4110.602 kb on - strand at 4110.639 kb on - strand at 4110.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 4,107,001 - +0.4 4,107,001 - +2.2 4,107,001 - -2.0 4,107,001 - -0.4 4,107,001 - -0.2 4,107,001 - -0.4 4,109,797 - +0.0 4,109,842 + -1.0 4,109,843 - +0.3 4,109,843 - +0.5 4,109,843 - -0.7 4,109,843 - -1.0 4,109,843 - -1.1 4,109,843 - -3.4 4,109,843 - +0.0 4,109,843 - +0.6 4,109,868 - +0.5 4,109,868 - +0.5 4,109,868 - -0.6 4,109,868 - +0.0 4,109,868 - +0.7 4,109,963 - DZA65_RS19005 0.22 -1.0 4,109,995 - DZA65_RS19005 0.26 +0.6 4,110,069 - DZA65_RS19005 0.36 -2.5 4,110,069 - DZA65_RS19005 0.36 -1.7 4,110,069 - DZA65_RS19005 0.36 +1.3 4,110,074 - DZA65_RS19005 0.36 -0.1 4,110,074 - DZA65_RS19005 0.36 +0.5 4,110,103 - DZA65_RS19005 0.40 +0.0 4,110,220 - DZA65_RS19005 0.56 +1.2 4,110,220 - DZA65_RS19005 0.56 +0.6 4,110,220 - DZA65_RS19005 0.56 +0.1 4,110,220 - DZA65_RS19005 0.56 -1.0 4,110,220 - DZA65_RS19005 0.56 -1.5 4,110,220 - DZA65_RS19005 0.56 -1.4 4,110,220 - DZA65_RS19005 0.56 +1.4 4,110,220 - DZA65_RS19005 0.56 +2.6 4,110,220 - DZA65_RS19005 0.56 -1.1 4,110,220 - DZA65_RS19005 0.56 -1.0 4,110,220 - DZA65_RS19005 0.56 -0.1 4,110,222 + DZA65_RS19005 0.56 +1.9 4,110,223 - DZA65_RS19005 0.56 +0.9 4,110,223 - DZA65_RS19005 0.56 +0.0 4,110,223 - DZA65_RS19005 0.56 -2.0 4,110,223 - DZA65_RS19005 0.56 +1.6 4,110,223 - DZA65_RS19005 0.56 -0.8 4,110,553 - -1.0 4,110,599 - +0.6 4,110,599 - -1.2 4,110,602 - +0.6 4,110,639 - +0.6 4,110,656 - -0.3
Or see this region's nucleotide sequence