Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18460

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,976,245	+		DZA65_RS18445	0.90	-0.0
3,976,245	+		DZA65_RS18445	0.90	-0.5
3,976,245	+		DZA65_RS18445	0.90	-0.0
3,976,246	-				+0.5
3,976,246	-				+0.6
3,976,246	-				+1.5
3,976,246	-				+1.5
3,976,257	+				-0.8
3,976,257	+				-1.0
3,976,257	+				-1.0
3,976,257	+				-1.9
3,976,258	-				-0.3
3,976,258	-				-1.4
3,976,258	-				+0.1
3,976,343	+		DZA65_RS18450	0.15	-0.6
3,976,343	+		DZA65_RS18450	0.15	+0.5
3,976,343	+		DZA65_RS18450	0.15	-1.6
3,976,344	-		DZA65_RS18450	0.16	-0.8
3,976,344	-		DZA65_RS18450	0.16	+1.5
3,976,344	-		DZA65_RS18450	0.16	-0.3
3,976,344	-		DZA65_RS18450	0.16	-0.9
3,976,344	-		DZA65_RS18450	0.16	+1.2
3,976,344	-		DZA65_RS18450	0.16	-1.5
3,976,344	-		DZA65_RS18450	0.16	+0.5
3,976,345	+		DZA65_RS18450	0.16	-1.3
3,976,345	+		DZA65_RS18450	0.16	-0.0
3,976,346	-		DZA65_RS18450	0.16	-0.5
3,976,346	-		DZA65_RS18450	0.16	-1.9
3,976,346	-		DZA65_RS18450	0.16	-0.5
3,976,346	-		DZA65_RS18450	0.16	-0.9
3,976,399	+		DZA65_RS18450	0.35	-0.5
3,976,400	-		DZA65_RS18450	0.35	-1.5
3,976,400	-		DZA65_RS18450	0.35	-0.8
3,976,400	-		DZA65_RS18450	0.35	+3.5
3,976,400	-		DZA65_RS18450	0.35	-0.5
3,976,400	-		DZA65_RS18450	0.35	-0.0
3,976,400	-		DZA65_RS18450	0.35	+2.2
3,976,425	+		DZA65_RS18450	0.44	-1.3
3,976,426	-		DZA65_RS18450	0.44	-0.3
3,976,426	-		DZA65_RS18450	0.44	+0.7
3,976,534	+		DZA65_RS18450	0.81	-0.8
3,976,534	+		DZA65_RS18450	0.81	-1.0
3,976,534	+		DZA65_RS18450	0.81	-1.5
3,976,534	+		DZA65_RS18450	0.81	-1.3
3,976,592	+				-1.3
3,976,593	-				-1.8
3,976,593	-				+0.2
3,976,593	-				-0.5
3,976,604	-				-0.3
3,976,604	-				+1.4
3,976,604	-				-0.3
3,976,604	-				-1.0
3,976,607	+				-1.6
3,976,652	-				+1.1
3,976,884	+		DZA65_RS18455	0.42	-0.5
3,976,884	+		DZA65_RS18455	0.42	-0.0
3,976,884	+		DZA65_RS18455	0.42	-0.7
3,976,885	-		DZA65_RS18455	0.42	+1.5
3,976,997	-		DZA65_RS18455	0.61	-1.2
3,977,004	+		DZA65_RS18455	0.62	-0.3
3,977,005	-		DZA65_RS18455	0.62	+1.0
3,977,005	-		DZA65_RS18455	0.62	-1.4
3,977,005	-		DZA65_RS18455	0.62	+0.2
3,977,005	-		DZA65_RS18455	0.62	+0.3
3,977,005	-		DZA65_RS18455	0.62	-0.2
3,977,101	-		DZA65_RS18455	0.78	-0.0
3,977,226	+				-0.6
3,977,226	+				+1.3
3,977,226	+				+0.8
3,977,226	+				-0.1
3,977,227	-				+0.1
3,977,227	-				+2.3
3,977,227	-				-2.0
3,977,227	-				-0.3
3,977,227	-				-1.0
3,977,227	-				+0.5
3,977,227	-				+1.1
3,977,241	+				-1.2
3,977,242	-				-0.5
3,977,248	+				-1.9
3,977,248	+				+0.2
3,977,248	+				-0.6
3,977,248	+				-0.3
3,977,248	+				-1.8
3,977,248	+				-0.3
3,977,248	+				+3.5
3,977,248	+				-0.8
3,977,249	-				-0.8
3,977,249	-				+0.5
3,977,249	-				+0.5
3,977,249	-				+1.0
3,977,285	-				-0.5
3,977,335	+		DZA65_RS18460	0.10	-1.0
3,977,335	+		DZA65_RS18460	0.10	+0.8
3,977,335	+		DZA65_RS18460	0.10	-1.5
3,977,336	-		DZA65_RS18460	0.10	-1.6
3,977,336	-		DZA65_RS18460	0.10	-0.0
3,977,336	-		DZA65_RS18460	0.10	-0.5
3,977,336	-		DZA65_RS18460	0.10	-0.5
3,977,403	+		DZA65_RS18460	0.16	+1.4
3,977,403	+		DZA65_RS18460	0.16	+2.2
3,977,403	+		DZA65_RS18460	0.16	-0.4
3,977,404	-		DZA65_RS18460	0.16	-2.2
3,977,404	-		DZA65_RS18460	0.16	+0.8
3,977,404	-		DZA65_RS18460	0.16	+0.3
3,977,613	+		DZA65_RS18460	0.34	-1.6
3,977,878	-		DZA65_RS18460	0.58	-1.6
3,977,882	-		DZA65_RS18460	0.58	-0.5
3,977,882	-		DZA65_RS18460	0.58	-1.0
3,977,882	-		DZA65_RS18460	0.58	-1.8
3,977,882	-		DZA65_RS18460	0.58	-1.0
3,977,882	-		DZA65_RS18460	0.58	+2.1
3,977,882	-		DZA65_RS18460	0.58	-1.4
3,977,926	+		DZA65_RS18460	0.62	-1.3
3,978,088	+		DZA65_RS18460	0.76	-0.8
3,978,088	+		DZA65_RS18460	0.76	+0.2
3,978,088	+		DZA65_RS18460	0.76	-1.1
3,978,088	+		DZA65_RS18460	0.76	+1.5
3,978,089	-		DZA65_RS18460	0.76	+1.3
3,978,089	-		DZA65_RS18460	0.76	+0.2
3,978,089	-		DZA65_RS18460	0.76	-2.0
3,978,089	-		DZA65_RS18460	0.76	-0.0
3,978,090	+		DZA65_RS18460	0.76	-0.5
3,978,090	+		DZA65_RS18460	0.76	+0.6
3,978,090	+		DZA65_RS18460	0.76	-1.0
3,978,090	+		DZA65_RS18460	0.76	-0.6
3,978,090	+		DZA65_RS18460	0.76	-0.8
3,978,090	+		DZA65_RS18460	0.76	+1.5
3,978,090	+		DZA65_RS18460	0.76	+0.8
3,978,090	+		DZA65_RS18460	0.76	-1.5
3,978,090	+		DZA65_RS18460	0.76	-1.6
3,978,090	+		DZA65_RS18460	0.76	+0.4
3,978,090	+				-0.5
3,978,090	+		DZA65_RS18460	0.76	-1.0
3,978,090	+		DZA65_RS18460	0.76	-1.0
3,978,090	+		DZA65_RS18460	0.76	-0.0
3,978,091	-		DZA65_RS18460	0.76	-0.8
3,978,091	-		DZA65_RS18460	0.76	+1.5
3,978,091	-		DZA65_RS18460	0.76	-0.8
3,978,091	-		DZA65_RS18460	0.76	+0.2
3,978,091	-		DZA65_RS18460	0.76	+0.8
3,978,091	-		DZA65_RS18460	0.76	+0.3
3,978,091	-		DZA65_RS18460	0.76	+0.3
3,978,091	-		DZA65_RS18460	0.76	+2.4
3,978,091	-		DZA65_RS18460	0.76	-1.3
3,978,091	-		DZA65_RS18460	0.76	-1.0
3,978,091	-		DZA65_RS18460	0.76	+3.0
3,978,091	-		DZA65_RS18460	0.76	+1.0
3,978,091	-		DZA65_RS18460	0.76	-0.4
3,978,103	+		DZA65_RS18460	0.77	-1.6
3,978,103	+		DZA65_RS18460	0.77	-0.0
3,978,103	+		DZA65_RS18460	0.77	-0.0
3,978,103	+		DZA65_RS18460	0.77	-0.0
3,978,103	+		DZA65_RS18460	0.77	+1.0
3,978,104	-		DZA65_RS18460	0.77	-0.6
3,978,104	-		DZA65_RS18460	0.77	-0.8
3,978,104	-		DZA65_RS18460	0.77	-1.2
3,978,209	-		DZA65_RS18460	0.87	+0.3
3,978,268	+				-0.1
3,978,269	-				-0.7
3,978,269	-				+0.3
3,978,269	-				-0.3
3,978,435	+				-0.5
3,978,468	+				+0.5
3,978,468	+				-1.5
3,978,469	-				-1.0
3,978,469	-				-0.0
3,978,469	-				-0.0
3,978,469	-				-0.5
3,978,474	+				-1.0
3,978,475	-				-0.4
3,978,475	-				+0.7
3,978,475	-				-1.6
3,978,535	+				-1.5
3,978,536	-				-1.6
3,978,545	+				-2.4
3,978,545	+				-1.8
3,978,545	+				-0.1
3,978,545	+				+0.2
3,978,545	+				-1.8
3,978,545	+				-0.0
3,978,546	-				-0.5
3,978,546	-				-1.6
3,978,546	-				-1.4
3,978,546	-				-1.5
3,978,546	-				-1.5
3,978,548	+				+2.2
3,978,549	-				+0.9
3,978,719	+				-0.2
3,978,750	+				-0.4
3,978,751	-				-2.2
3,978,833	+		DZA65_RS18470	0.25	-2.5
3,978,833	+		DZA65_RS18470	0.25	-0.2
3,978,834	-		DZA65_RS18470	0.25	-2.0
3,978,834	-		DZA65_RS18470	0.25	-1.8
3,978,834	-		DZA65_RS18470	0.25	+0.5
3,978,876	+		DZA65_RS18470	0.35	+0.5
3,978,877	-		DZA65_RS18470	0.35	+1.2
3,978,877	-		DZA65_RS18470	0.35	-0.6
3,978,877	-		DZA65_RS18470	0.35	+4.6
3,978,886	+		DZA65_RS18470	0.37	+2.6
3,978,886	+		DZA65_RS18470	0.37	+0.1
3,978,886	+		DZA65_RS18470	0.37	+0.5
3,978,887	-		DZA65_RS18470	0.37	-0.0
3,978,887	-		DZA65_RS18470	0.37	-0.0
3,978,887	-		DZA65_RS18470	0.37	+3.1
3,978,887	-		DZA65_RS18470	0.37	-1.9
3,978,887	-		DZA65_RS18470	0.37	+1.5
3,978,887	-		DZA65_RS18470	0.37	+1.5
3,979,098	+		DZA65_RS18470	0.83	+0.5
3,979,118	+		DZA65_RS18470	0.88	+1.5
3,979,118	+		DZA65_RS18470	0.88	-2.0
3,979,118	+		DZA65_RS18470	0.88	+0.5
3,979,118	+		DZA65_RS18470	0.88	-0.5
3,979,119	-		DZA65_RS18470	0.88	+0.3
3,979,119	-		DZA65_RS18470	0.88	-1.6
3,979,127	+		DZA65_RS18470	0.90	-0.0
3,979,128	-				-0.7
3,979,186	+				-0.2
3,979,186	+				+1.1