Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17400

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,749,119	-		DZA65_RS17390	0.77	-2.0
3,749,119	-		DZA65_RS17390	0.77	-0.2
3,749,119	-		DZA65_RS17390	0.77	-1.8
3,749,134	-		DZA65_RS17390	0.78	-0.8
3,749,134	-		DZA65_RS17390	0.78	-0.5
3,749,168	-		DZA65_RS17390	0.83	+1.2
3,749,168	-		DZA65_RS17390	0.83	-1.5
3,749,191	+		DZA65_RS17390	0.86	+2.2
3,749,191	+		DZA65_RS17390	0.86	+0.5
3,749,191	+		DZA65_RS17390	0.86	-0.5
3,749,192	-		DZA65_RS17390	0.86	-1.1
3,749,192	-		DZA65_RS17390	0.86	-1.6
3,749,219	+		DZA65_RS17390	0.89	-1.5
3,749,219	+		DZA65_RS17390	0.89	+0.5
3,749,219	+		DZA65_RS17390	0.89	-1.3
3,749,223	-		DZA65_RS17390	0.90	+0.2
3,749,223	-		DZA65_RS17390	0.90	-1.1
3,749,223	-		DZA65_RS17390	0.90	-0.5
3,749,263	+				-1.5
3,749,264	-				-1.1
3,749,328	+				+0.9
3,749,328	+				+1.5
3,749,328	+				-0.1
3,749,339	+				-0.5
3,749,339	+				-0.7
3,749,340	-				+0.5
3,749,352	+				-0.1
3,749,353	-				-2.0
3,749,379	+				-1.8
3,749,379	+				+0.8
3,749,379	+				+0.5
3,749,387	+				-0.1
3,749,387	+				+2.2
3,749,388	-				-0.7
3,749,388	-				-1.3
3,749,388	-				-0.8
3,749,388	-				-1.7
3,749,388	-				-0.8
3,749,398	+				-2.2
3,749,398	+				-1.3
3,749,398	+				-0.8
3,749,398	+				-0.8
3,749,399	-				+0.8
3,749,399	-				-0.5
3,749,399	-				+0.2
3,749,399	-				+1.6
3,749,407	+				-0.8
3,749,408	-				+1.8
3,749,408	-				+1.0
3,749,526	+		DZA65_RS17395	0.24	+0.7
3,749,526	+		DZA65_RS17395	0.24	-0.4
3,749,527	-				-1.3
3,749,527	-		DZA65_RS17395	0.24	-0.3
3,749,527	-		DZA65_RS17395	0.24	-0.1
3,749,527	-				-1.1
3,749,527	-		DZA65_RS17395	0.24	+0.5
3,749,527	-		DZA65_RS17395	0.24	-0.5
3,749,541	+		DZA65_RS17395	0.27	+0.5
3,749,542	-		DZA65_RS17395	0.27	-1.7
3,749,542	-		DZA65_RS17395	0.27	-2.5
3,749,582	-		DZA65_RS17395	0.35	-1.9
3,749,582	-		DZA65_RS17395	0.35	-1.0
3,749,582	-		DZA65_RS17395	0.35	+0.8
3,749,582	-		DZA65_RS17395	0.35	+0.7
3,749,655	+		DZA65_RS17395	0.49	-1.1
3,749,655	+		DZA65_RS17395	0.49	+0.5
3,749,655	+		DZA65_RS17395	0.49	+1.5
3,749,655	+		DZA65_RS17395	0.49	+2.7
3,749,656	-		DZA65_RS17395	0.49	+1.3
3,749,656	-		DZA65_RS17395	0.49	-1.0
3,749,678	-		DZA65_RS17395	0.53	+0.0
3,749,678	-		DZA65_RS17395	0.53	+0.3
3,749,686	+		DZA65_RS17395	0.55	-0.2
3,749,687	-		DZA65_RS17395	0.55	-0.2
3,749,788	+		DZA65_RS17395	0.75	+0.2
3,749,788	+		DZA65_RS17395	0.75	-1.0
3,749,788	+		DZA65_RS17395	0.75	-2.2
3,749,789	-		DZA65_RS17395	0.75	+0.4
3,749,789	-		DZA65_RS17395	0.75	-0.8
3,749,789	-		DZA65_RS17395	0.75	-0.4
3,749,789	-		DZA65_RS17395	0.75	+0.5
3,749,789	-		DZA65_RS17395	0.75	-2.6
3,749,789	-				+1.5
3,749,789	-		DZA65_RS17395	0.75	-0.1
3,749,789	-		DZA65_RS17395	0.75	-1.8
3,749,804	+		DZA65_RS17395	0.78	+1.3
3,749,804	+		DZA65_RS17395	0.78	-0.5
3,749,805	-		DZA65_RS17395	0.78	-0.0
3,749,805	-		DZA65_RS17395	0.78	-1.1
3,749,805	-		DZA65_RS17395	0.78	+0.9
3,749,824	+		DZA65_RS17395	0.82	+1.4
3,749,824	+		DZA65_RS17395	0.82	+0.4
3,749,825	-		DZA65_RS17395	0.82	-1.2
3,749,879	-				-1.5
3,749,884	+				-0.5
3,749,885	-				-2.7
3,749,885	-				-1.3
3,749,885	-				-0.1
3,749,896	+				-0.1
3,749,896	+				-0.5
3,749,897	-				-2.8
3,749,902	+				-1.3
3,749,902	+				+1.1
3,749,902	+				-1.8
3,749,902	+				-1.3
3,749,902	+				+0.8
3,749,903	-				+0.7
3,749,903	-				-1.5
3,749,903	-				-0.8
3,749,903	-				+0.1
3,749,903	-				+0.3
3,749,903	-				-0.7
3,749,906	+				-0.1
3,749,906	+				-0.5
3,749,906	+				+0.8
3,749,906	+				+0.0
3,749,906	+				+0.5
3,749,906	+				-2.6
3,749,906	+				-0.1
3,749,907	-				+0.5
3,749,907	-				-0.5
3,749,907	-				-0.1
3,749,907	-				-2.1
3,749,907	-				+1.2
3,749,907	-				+0.5
3,749,907	-				+0.8
3,749,907	-				+0.5
3,749,907	-				-0.5
3,749,907	-				-0.2
3,749,907	-				-1.8
3,749,907	-				-0.2
3,749,907	-				-0.8
3,749,907	-				-0.3
3,749,907	-				+0.5
3,749,910	-				-0.8
3,749,910	-				-0.3
3,749,923	+				+0.5
3,749,984	+				-0.5
3,749,984	+				-0.8
3,749,985	-				-0.6
3,750,006	+				-2.7
3,750,007	-				-0.5
3,750,007	-				-1.3
3,750,009	+				+0.8
3,750,010	-				-0.8
3,750,021	+				+0.5
3,750,025	-				-0.7
3,750,085	+				+0.8
3,750,085	+				-0.1
3,750,085	+				-1.3
3,750,086	-				-1.1
3,750,086	-				+1.1
3,750,086	-				+0.2
3,750,086	-				-1.2
3,750,104	+				-2.1
3,750,119	+				-0.8
3,750,120	-				-0.9
3,750,245	+				+0.5
3,750,246	-				-0.1
3,750,374	+		DZA65_RS17400	0.17	-1.3
3,750,381	+		DZA65_RS17400	0.18	+0.5
3,750,381	+		DZA65_RS17400	0.18	-1.7
3,750,381	+		DZA65_RS17400	0.18	+0.9
3,750,418	+		DZA65_RS17400	0.20	-1.5
3,750,418	+		DZA65_RS17400	0.20	-1.3
3,750,469	-		DZA65_RS17400	0.24	-2.6
3,750,501	+		DZA65_RS17400	0.26	-0.5
3,750,535	-		DZA65_RS17400	0.28	-1.7
3,750,678	+		DZA65_RS17400	0.37	-0.5
3,750,678	+		DZA65_RS17400	0.37	+1.8
3,750,678	+		DZA65_RS17400	0.37	-0.8
3,750,758	+		DZA65_RS17400	0.42	-1.0
3,750,852	+		DZA65_RS17400	0.48	-0.5
3,750,881	+				-0.5
3,750,882	-		DZA65_RS17400	0.50	+0.5
3,750,927	+		DZA65_RS17400	0.53	-0.1
3,750,928	-		DZA65_RS17400	0.53	-0.3
3,750,934	-				-1.5
3,751,097	+		DZA65_RS17400	0.64	-1.3
3,751,098	-		DZA65_RS17400	0.64	-0.1
3,751,098	-		DZA65_RS17400	0.64	-1.8
3,751,102	-		DZA65_RS17400	0.64	-0.5
3,751,149	+		DZA65_RS17400	0.67	+0.9
3,751,162	-		DZA65_RS17400	0.68	+2.6
3,751,204	-		DZA65_RS17400	0.71	+0.3
3,751,221	+		DZA65_RS17400	0.72	+0.9
3,751,347	+		DZA65_RS17400	0.80	-0.5
3,751,348	-		DZA65_RS17400	0.80	-1.7
3,751,348	-		DZA65_RS17400	0.80	+1.5
3,751,348	-		DZA65_RS17400	0.80	-0.5
3,751,375	+		DZA65_RS17400	0.82	+2.5
3,751,376	-		DZA65_RS17400	0.82	-2.6
3,751,376	-		DZA65_RS17400	0.82	-0.5
3,751,401	+		DZA65_RS17400	0.84	-0.1
3,751,582	-				+1.8
3,751,582	-				-1.7
3,751,680	+				-3.4
3,751,680	+				-2.3
3,751,681	-				-1.2
3,751,681	-				-1.5
3,751,681	-				-0.1
3,751,681	-				-0.2
3,751,681	-				-1.3
3,751,681	-				+0.5
3,751,690	-				-0.0
3,751,690	-				+0.8
3,751,692	+				+1.5
3,751,693	-				-2.2
3,751,699	-				+0.7
3,751,699	-				+1.1
3,751,699	-				+1.1
3,751,699	-				+0.5
3,751,708	+				-0.9
3,751,708	+				+2.5
3,751,708	+				+0.2
3,751,708	+				-0.5
3,751,708	+				+0.2
3,751,708	+				+0.1
3,751,708	+				-2.9
3,751,708	+				-0.8
3,751,708	+				-1.0
3,751,708	+				-1.1
3,751,708	+				-1.8
3,751,709	-				+1.7
3,751,709	-				-1.1
3,751,709	-				+1.2
3,751,709	-				-1.2
3,751,709	-				-0.4
3,751,709	-				-2.3
3,751,731	+				-0.4
3,751,731	+				-0.8
3,751,731	+				-0.8
3,751,731	+				-1.7
3,751,731	+				-0.8
3,751,779	+				-1.1
3,751,786	+		DZA65_RS17405	0.11	-1.3
3,751,811	+		DZA65_RS17405	0.17	-0.1
3,751,811	+		DZA65_RS17405	0.17	-1.7
3,751,811	+		DZA65_RS17405	0.17	-0.1
3,751,812	-		DZA65_RS17405	0.17	+0.5
3,751,812	-		DZA65_RS17405	0.17	+0.3
3,751,815	+		DZA65_RS17405	0.18	+2.3
3,751,815	+		DZA65_RS17405	0.18	+0.2
3,751,815	+		DZA65_RS17405	0.18	+0.5
3,751,815	+		DZA65_RS17405	0.18	-0.1
3,751,815	+		DZA65_RS17405	0.18	-2.0
3,751,815	+		DZA65_RS17405	0.18	-0.1
3,751,815	+		DZA65_RS17405	0.18	-1.3
3,751,815	+		DZA65_RS17405	0.18	-0.8
3,751,816	-		DZA65_RS17405	0.18	-1.5
3,751,816	-		DZA65_RS17405	0.18	-1.7
3,751,816	-		DZA65_RS17405	0.18	-1.1
3,751,816	-		DZA65_RS17405	0.18	-1.1
3,751,816	-		DZA65_RS17405	0.18	+1.5
3,751,818	+		DZA65_RS17405	0.19	-0.1
3,751,819	-		DZA65_RS17405	0.19	-0.5
3,751,866	+		DZA65_RS17405	0.30	+0.5
3,751,866	+		DZA65_RS17405	0.30	-1.4
3,751,866	+		DZA65_RS17405	0.30	+2.3
3,751,866	+		DZA65_RS17405	0.30	-0.8
3,751,866	+		DZA65_RS17405	0.30	+0.2
3,751,866	+		DZA65_RS17405	0.30	-3.5
3,751,866	+		DZA65_RS17405	0.30	+1.2
3,751,866	+		DZA65_RS17405	0.30	+2.1
3,751,867	-				-0.5
3,751,867	-		DZA65_RS17405	0.30	-1.3
3,751,867	-		DZA65_RS17405	0.30	+2.0
3,751,867	-		DZA65_RS17405	0.30	-1.1
3,751,868	+		DZA65_RS17405	0.31	-1.6
3,751,892	+		DZA65_RS17405	0.36	+0.6
3,751,892	+		DZA65_RS17405	0.36	-0.5
3,751,892	+		DZA65_RS17405	0.36	+0.8
3,751,892	+		DZA65_RS17405	0.36	-1.7
3,751,893	-		DZA65_RS17405	0.36	-0.1
3,751,893	-		DZA65_RS17405	0.36	+0.2
3,751,893	-		DZA65_RS17405	0.36	-1.3
3,751,896	+		DZA65_RS17405	0.37	-1.3
3,751,896	+		DZA65_RS17405	0.37	-0.1
3,751,896	+		DZA65_RS17405	0.37	-0.5
3,751,896	+		DZA65_RS17405	0.37	-0.1
3,751,896	+		DZA65_RS17405	0.37	-0.2
3,751,896	+		DZA65_RS17405	0.37	-1.7
3,751,896	+		DZA65_RS17405	0.37	-1.3
3,751,897	-		DZA65_RS17405	0.37	-3.4
3,751,897	-		DZA65_RS17405	0.37	-0.5
3,751,897	-		DZA65_RS17405	0.37	+1.7
3,751,897	-		DZA65_RS17405	0.37	+0.2
3,751,897	-		DZA65_RS17405	0.37	-0.1
3,751,897	-		DZA65_RS17405	0.37	+2.1
3,751,899	+		DZA65_RS17405	0.38	+0.5
3,751,899	+		DZA65_RS17405	0.38	-0.1
3,751,899	+		DZA65_RS17405	0.38	-1.8
3,751,899	+		DZA65_RS17405	0.38	+0.5
3,751,899	+		DZA65_RS17405	0.38	+1.3
3,751,900	-		DZA65_RS17405	0.38	-1.5
3,751,900	-		DZA65_RS17405	0.38	+0.8
3,751,900	-		DZA65_RS17405	0.38	-1.8
3,751,900	-		DZA65_RS17405	0.38	+3.5
3,751,910	+		DZA65_RS17405	0.40	+0.9
3,751,911	-		DZA65_RS17405	0.41	+0.5
3,751,961	+				+1.5
3,751,961	+		DZA65_RS17405	0.52	-0.7
3,751,961	+		DZA65_RS17405	0.52	-0.5
3,751,962	-		DZA65_RS17405	0.52	-0.7
3,751,988	+		DZA65_RS17405	0.59	-1.5
3,751,988	+		DZA65_RS17405	0.59	+1.5
3,751,989	-				-0.1
3,751,992	-		DZA65_RS17405	0.59	+0.5
3,752,012	+		DZA65_RS17405	0.64	-0.1
3,752,012	+		DZA65_RS17405	0.64	-0.8
3,752,012	+		DZA65_RS17405	0.64	+0.3
3,752,012	+		DZA65_RS17405	0.64	+3.1
3,752,012	+		DZA65_RS17405	0.64	-0.2
3,752,013	-		DZA65_RS17405	0.64	-0.0
3,752,013	-		DZA65_RS17405	0.64	+0.5
3,752,013	-		DZA65_RS17405	0.64	-1.1
3,752,013	-		DZA65_RS17405	0.64	-0.7
3,752,013	-		DZA65_RS17405	0.64	+0.2
3,752,013	-		DZA65_RS17405	0.64	+1.2
3,752,015	+		DZA65_RS17405	0.65	-1.1
3,752,030	+		DZA65_RS17405	0.68	-0.5
3,752,031	-		DZA65_RS17405	0.69	-1.7
3,752,031	-		DZA65_RS17405	0.69	-1.8
3,752,064	+		DZA65_RS17405	0.76	+0.0
3,752,064	+		DZA65_RS17405	0.76	+0.8
3,752,076	+		DZA65_RS17405	0.79	-1.5
3,752,077	-		DZA65_RS17405	0.79	+1.6
3,752,096	+				+0.5
3,752,096	+		DZA65_RS17405	0.84	-2.4
3,752,174	+				-1.3
3,752,174	+				+1.7
3,752,174	+				+0.5
3,752,174	+				+0.5
3,752,174	+				-1.5
3,752,175	-				-0.8
3,752,175	-				-2.3
3,752,175	-				+0.1
3,752,175	-				-1.3
3,752,175	-				+2.2
3,752,185	+				+2.1
3,752,185	+				+1.5
3,752,185	+				+1.2
3,752,186	-				+0.1
3,752,186	-				-0.1
3,752,191	+				+0.1
3,752,192	-				-1.3
3,752,192	-				+0.3
3,752,192	-				-0.1
3,752,267	+		DZA65_RS17410	0.19	+1.5
3,752,268	-		DZA65_RS17410	0.19	-0.5
3,752,268	-		DZA65_RS17410	0.19	+0.5
3,752,305	+		DZA65_RS17410	0.25	+0.5
3,752,306	-		DZA65_RS17410	0.25	-0.8
3,752,347	-		DZA65_RS17410	0.33	-0.1
3,752,347	-		DZA65_RS17410	0.33	+0.1
3,752,434	-		DZA65_RS17410	0.48	-0.7
3,752,434	-		DZA65_RS17410	0.48	-1.3
3,752,440	+		DZA65_RS17410	0.49	-0.5
3,752,468	+		DZA65_RS17410	0.54	-2.7
3,752,469	-		DZA65_RS17410	0.54	-0.1
3,752,469	-		DZA65_RS17410	0.54	+0.5
3,752,469	-		DZA65_RS17410	0.54	+0.2
3,752,469	-		DZA65_RS17410	0.54	-0.6
3,752,469	-		DZA65_RS17410	0.54	-2.1
3,752,469	-		DZA65_RS17410	0.54	-1.3
3,752,521	+		DZA65_RS17410	0.63	+0.2
3,752,522	-		DZA65_RS17410	0.63	-0.1
3,752,522	-		DZA65_RS17410	0.63	-1.5
3,752,554	+		DZA65_RS17410	0.69	+0.9
3,752,555	-		DZA65_RS17410	0.69	+1.1
3,752,569	+		DZA65_RS17410	0.72	-1.1
3,752,570	-		DZA65_RS17410	0.72	-2.1
3,752,616	+		DZA65_RS17410	0.80	-0.3
3,752,617	-		DZA65_RS17410	0.80	+1.5
3,752,617	-		DZA65_RS17410	0.80	+1.5
3,752,617	-		DZA65_RS17410	0.80	-1.3
3,752,623	+		DZA65_RS17410	0.81	+0.9
3,752,623	+		DZA65_RS17410	0.81	-2.2
3,752,623	+		DZA65_RS17410	0.81	+1.4
3,752,623	+		DZA65_RS17410	0.81	+2.9
3,752,623	+		DZA65_RS17410	0.81	+0.2
3,752,623	+		DZA65_RS17410	0.81	+0.9
3,752,624	-		DZA65_RS17410	0.81	-1.1
3,752,624	-		DZA65_RS17410	0.81	-2.3
3,752,624	-		DZA65_RS17410	0.81	-1.3
3,752,624	-		DZA65_RS17410	0.81	-0.1
3,752,624	-		DZA65_RS17410	0.81	-2.2
3,752,624	-		DZA65_RS17410	0.81	-1.1
3,752,624	-		DZA65_RS17410	0.81	-0.5
3,752,628	+		DZA65_RS17410	0.82	-0.1
3,752,628	+		DZA65_RS17410	0.82	+0.8
3,752,628	+		DZA65_RS17410	0.82	-0.4
3,752,629	-		DZA65_RS17410	0.82	-0.6
3,752,629	-		DZA65_RS17410	0.82	-0.5
3,752,629	-		DZA65_RS17410	0.82	-1.7
3,752,629	-		DZA65_RS17410	0.82	-0.1