Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11465

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,439,138	+		DZA65_RS11455	0.64	-1.7
2,439,230	+		DZA65_RS11455	0.69	+0.5
2,439,258	+		DZA65_RS11455	0.71	-1.8
2,439,259	-		DZA65_RS11455	0.71	-2.1
2,439,259	-		DZA65_RS11455	0.71	-0.6
2,439,259	-		DZA65_RS11455	0.71	+0.5
2,439,259	-		DZA65_RS11455	0.71	-0.7
2,439,308	-		DZA65_RS11455	0.74	-0.8
2,439,310	+		DZA65_RS11455	0.74	-1.2
2,439,310	+		DZA65_RS11455	0.74	-0.8
2,439,311	-		DZA65_RS11455	0.74	-2.3
2,439,311	-		DZA65_RS11455	0.74	+0.2
2,439,311	-		DZA65_RS11455	0.74	-0.8
2,439,311	-		DZA65_RS11455	0.74	+0.2
2,439,311	-		DZA65_RS11455	0.74	-0.2
2,439,327	+		DZA65_RS11455	0.75	-0.4
2,439,339	+		DZA65_RS11455	0.76	-0.0
2,439,339	+		DZA65_RS11455	0.76	+1.2
2,439,339	+		DZA65_RS11455	0.76	+0.3
2,439,339	+		DZA65_RS11455	0.76	-0.8
2,439,340	-		DZA65_RS11455	0.76	-0.8
2,439,340	-		DZA65_RS11455	0.76	-1.0
2,439,340	-		DZA65_RS11455	0.76	+0.1
2,439,350	+		DZA65_RS11455	0.76	+0.2
2,439,360	-		DZA65_RS11455	0.77	-2.4
2,439,367	+		DZA65_RS11455	0.77	+1.2
2,439,432	+		DZA65_RS11455	0.81	+2.5
2,439,432	+		DZA65_RS11455	0.81	+1.7
2,439,433	-		DZA65_RS11455	0.81	+0.5
2,439,433	-		DZA65_RS11455	0.81	-0.6
2,439,601	+				+2.9
2,439,601	+				-0.4
2,439,601	+				-1.4
2,439,602	-				+0.5
2,439,675	-				+1.2
2,439,695	-				+0.6
2,439,785	+				-0.1
2,439,785	+				-1.0
2,439,799	+				+1.5
2,439,800	-				-1.6
2,439,801	+				-1.3
2,439,820	-				+0.4
2,439,852	-				+0.2
2,439,852	-				-0.5
2,440,097	+				-1.6
2,440,099	+				-1.6
2,440,101	+				-0.9
2,440,101	+				-2.6
2,440,102	-				+0.2
2,440,102	-				+2.0
2,440,102	-				-1.3
2,440,102	-				+0.2
2,440,102	-				+0.6
2,440,102	-				+1.2
2,440,121	-				+0.9
2,440,168	+				+0.9
2,440,406	-		DZA65_RS11465	0.29	+1.2
2,440,441	+		DZA65_RS11465	0.32	-1.4
2,440,500	+		DZA65_RS11465	0.38	+0.5
2,440,564	+		DZA65_RS11465	0.44	+0.2
2,440,564	+		DZA65_RS11465	0.44	+2.2
2,440,565	-		DZA65_RS11465	0.44	+0.8
2,440,616	-		DZA65_RS11465	0.49	+0.1
2,440,621	+		DZA65_RS11465	0.50	-2.1
2,440,621	+				-1.1
2,440,621	+		DZA65_RS11465	0.50	+0.8
2,440,621	+		DZA65_RS11465	0.50	-0.8
2,440,621	+		DZA65_RS11465	0.50	+0.2
2,440,622	-		DZA65_RS11465	0.50	-1.1
2,440,622	-		DZA65_RS11465	0.50	+1.2
2,440,675	+		DZA65_RS11465	0.55	-2.6
2,440,676	-		DZA65_RS11465	0.55	-1.8
2,440,676	-		DZA65_RS11465	0.55	+1.8
2,440,711	+		DZA65_RS11465	0.59	-0.4
2,440,712	-		DZA65_RS11465	0.59	-1.4
2,440,712	-		DZA65_RS11465	0.59	+0.6
2,440,712	-		DZA65_RS11465	0.59	+0.9
2,440,805	-		DZA65_RS11465	0.68	+0.8
2,440,847	-		DZA65_RS11465	0.72	-2.8
2,440,865	+		DZA65_RS11465	0.74	+0.2
2,440,865	+		DZA65_RS11465	0.74	-0.1
2,440,866	-		DZA65_RS11465	0.74	+0.2
2,440,866	-		DZA65_RS11465	0.74	-0.5
2,440,869	+		DZA65_RS11465	0.74	-0.6
2,440,927	+		DZA65_RS11465	0.80	-1.1
2,440,927	+		DZA65_RS11465	0.80	-1.8
2,440,927	+		DZA65_RS11465	0.80	-1.6
2,440,927	+		DZA65_RS11465	0.80	-1.5
2,440,928	-		DZA65_RS11465	0.80	-0.7
2,440,928	-		DZA65_RS11465	0.80	-0.4
2,440,928	-		DZA65_RS11465	0.80	+1.2
2,440,928	-		DZA65_RS11465	0.80	+0.8
2,440,931	+		DZA65_RS11465	0.80	-2.1
2,440,931	+		DZA65_RS11465	0.80	-0.5
2,440,931	+		DZA65_RS11465	0.80	-0.7
2,440,931	+				-0.1
2,440,931	+		DZA65_RS11465	0.80	-0.8
2,440,932	-		DZA65_RS11465	0.81	-1.4
2,440,932	-		DZA65_RS11465	0.81	+1.0
2,440,932	-		DZA65_RS11465	0.81	+1.1
2,440,934	+		DZA65_RS11465	0.81	-0.2
2,440,934	+		DZA65_RS11465	0.81	-1.4
2,440,934	+		DZA65_RS11465	0.81	+0.8
2,440,934	+		DZA65_RS11465	0.81	+0.8
2,440,934	+		DZA65_RS11465	0.81	+2.8
2,440,934	+		DZA65_RS11465	0.81	+2.8
2,440,934	+		DZA65_RS11465	0.81	+0.2
2,440,934	+		DZA65_RS11465	0.81	-0.0
2,440,934	+		DZA65_RS11465	0.81	-2.1
2,440,934	+		DZA65_RS11465	0.81	-0.3
2,440,935	-		DZA65_RS11465	0.81	+2.2
2,440,935	-		DZA65_RS11465	0.81	-1.1
2,440,935	-		DZA65_RS11465	0.81	+1.4
2,440,935	-		DZA65_RS11465	0.81	+1.2
2,440,935	-		DZA65_RS11465	0.81	+0.2
2,440,935	-		DZA65_RS11465	0.81	+0.5
2,440,935	-		DZA65_RS11465	0.81	-0.4
2,440,984	+		DZA65_RS11465	0.86	-0.4
2,440,985	-		DZA65_RS11465	0.86	-1.8
2,440,985	-		DZA65_RS11465	0.86	-0.2
2,440,985	-		DZA65_RS11465	0.86	-0.4
2,440,985	-		DZA65_RS11465	0.86	+0.9
2,440,995	+		DZA65_RS11465	0.87	-0.6
2,440,996	-		DZA65_RS11465	0.87	+1.7
2,440,996	-		DZA65_RS11465	0.87	+0.2
2,440,996	-		DZA65_RS11465	0.87	-2.7
2,441,026	+		DZA65_RS11465	0.90	+1.6
2,441,027	-				-1.1
2,441,027	-				-2.9
2,441,044	+				-0.8
2,441,045	-				-1.0
2,441,147	+				+0.9
2,441,147	+				-0.8
2,441,157	-				-0.8
2,441,160	+				-0.4
2,441,160	+				-1.1
2,441,160	+				+0.5
2,441,160	+				-0.8
2,441,160	+				-0.8
2,441,161	-				-0.4
2,441,161	-				+0.9
2,441,161	-				+0.7
2,441,161	-				+0.2
2,441,161	-				-1.6
2,441,164	+				-2.3
2,441,172	-				-0.1
2,441,172	-				-2.1
2,441,172	-				-0.3
2,441,176	+				-0.4
2,441,237	-				-0.4
2,441,326	+				-1.8
2,441,327	-				-1.5
2,441,331	-				-1.6
2,441,340	-				-1.4
2,441,354	+				+0.2
2,441,355	-				-0.4
2,441,358	+				-2.5
2,441,358	+				-2.0
2,441,359	-				-1.4
2,441,359	-				+1.8
2,441,418	+				-0.1
2,441,421	+				+0.2
2,441,448	+				-0.4
2,441,448	+				-0.1
2,441,448	+				-1.6
2,441,449	-				-0.8
2,441,449	-				-0.8
2,441,449	-				-1.1
2,441,458	-				-1.6
2,441,459	+				-0.2
2,441,459	+				+0.8
2,441,459	+				-1.4
2,441,459	+				+1.0
2,441,460	-				-1.8
2,441,460	-				-1.4
2,441,460	-				+0.2
2,441,460	-				-2.1
2,441,463	+				+0.5
2,441,463	+				+0.5
2,441,463	+				+0.4
2,441,464	-				-0.8
2,441,464	-				+0.0
2,441,464	-				+2.3
2,441,465	+				-1.4
2,441,465	+				-0.5
2,441,466	-				-2.3
2,441,486	+				+2.9
2,441,487	-				+0.2
2,441,502	+				-0.4
2,441,503	-				-1.3
2,441,509	+				-2.3
2,441,509	+				-2.0
2,441,579	+				-2.6
2,441,579	+				-1.0
2,441,579	+				+0.2
2,441,579	+				-1.4
2,441,579	+				-1.1
2,441,579	+				+1.2
2,441,579	+				-0.6
2,441,579	+				+0.4
2,441,579	+				+0.9
2,441,579	+				-0.3
2,441,580	-				-0.4
2,441,580	-				+1.2
2,441,580	-				-2.0
2,441,580	-				-0.4
2,441,580	-				-0.0
2,441,580	-				+0.6
2,441,580	-				+1.0
2,441,580	-				+1.6
2,441,580	-				+1.5
2,441,590	+				-0.6
2,441,672	+				-0.6
2,441,734	+				+2.2
2,441,734	+				+1.6
2,441,734	+				-0.4
2,441,734	+				+0.1
2,441,735	-				+1.2
2,441,735	-				+1.9
2,441,735	-				-0.8
2,441,763	-				+1.6
2,441,856	+		DZA65_RS11470	0.16	-2.0
2,441,856	+		DZA65_RS11470	0.16	-0.0
2,441,856	+		DZA65_RS11470	0.16	-0.2
2,441,857	-		DZA65_RS11470	0.16	+0.7
2,441,927	+		DZA65_RS11470	0.21	+0.5
2,442,039	+		DZA65_RS11470	0.29	-0.8
2,442,039	+		DZA65_RS11470	0.29	+1.2
2,442,039	+		DZA65_RS11470	0.29	-2.1
2,442,039	+				+1.6
2,442,040	-				-0.8
2,442,040	-		DZA65_RS11470	0.29	-1.6
2,442,040	-		DZA65_RS11470	0.29	-0.6
2,442,040	-		DZA65_RS11470	0.29	-1.6
2,442,064	+		DZA65_RS11470	0.31	+0.2
2,442,065	-		DZA65_RS11470	0.31	-0.7
2,442,065	-		DZA65_RS11470	0.31	+0.2
2,442,065	-		DZA65_RS11470	0.31	-1.8
2,442,065	-		DZA65_RS11470	0.31	+0.9
2,442,068	+		DZA65_RS11470	0.31	-0.3
2,442,068	+		DZA65_RS11470	0.31	-2.6
2,442,068	+		DZA65_RS11470	0.31	+0.5
2,442,068	+		DZA65_RS11470	0.31	-0.5
2,442,068	+		DZA65_RS11470	0.31	-0.4
2,442,068	+		DZA65_RS11470	0.31	-0.4
2,442,068	+		DZA65_RS11470	0.31	-0.1
2,442,069	-		DZA65_RS11470	0.31	+1.2
2,442,069	-		DZA65_RS11470	0.31	-1.3