Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11250

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,385,820	-		DZA65_RS11245	0.56	-0.2
2,385,827	+		DZA65_RS11245	0.57	+1.2
2,385,835	+		DZA65_RS11245	0.57	-1.3
2,385,835	+		DZA65_RS11245	0.57	+1.2
2,385,836	-		DZA65_RS11245	0.57	+1.2
2,385,893	+		DZA65_RS11245	0.61	-0.6
2,385,893	+		DZA65_RS11245	0.61	-0.4
2,385,894	-		DZA65_RS11245	0.61	-0.4
2,386,120	-		DZA65_RS11245	0.74	+0.4
2,386,120	-		DZA65_RS11245	0.74	-1.6
2,386,334	+		DZA65_RS11245	0.86	+0.8
2,386,334	+		DZA65_RS11245	0.86	-1.6
2,386,335	-		DZA65_RS11245	0.86	+0.2
2,386,359	-		DZA65_RS11245	0.88	-1.6
2,386,404	+				-0.5
2,386,404	+				-1.4
2,386,405	-				+0.2
2,386,405	-				+2.6
2,386,406	+				-0.0
2,386,406	+				-1.1
2,386,406	+				-0.8
2,386,407	-				-2.4
2,386,407	-				-0.8
2,386,435	+				-0.8
2,386,435	+				-2.1
2,386,435	+				-0.0
2,386,435	+				-1.3
2,386,448	+				-2.3
2,386,448	+				-1.6
2,386,448	+				+1.3
2,386,448	+				+0.6
2,386,448	+				+1.2
2,386,448	+				-0.2
2,386,448	+				+1.4
2,386,448	+				+0.4
2,386,448	+				+0.3
2,386,448	+				-0.4
2,386,448	+				-1.1
2,386,448	+				+0.6
2,386,448	+				-1.7
2,386,448	+				+1.2
2,386,448	+				-2.6
2,386,448	+				+1.5
2,386,448	+				+0.2
2,386,448	+				-0.6
2,386,448	+				-0.1
2,386,448	+				+2.0
2,386,448	+				-1.6
2,386,448	+				+0.2
2,386,448	+				+0.2
2,386,448	+				-0.3
2,386,449	-				+0.4
2,386,449	-				+1.2
2,386,449	-				+0.0
2,386,449	-				-3.5
2,386,449	-				-0.4
2,386,449	-				-0.4
2,386,449	-				+0.9
2,386,449	-				-0.1
2,386,449	-				-0.8
2,386,449	-				+0.4
2,386,449	-				-0.0
2,386,449	-				+1.7
2,386,449	-				+1.2
2,386,449	-				-0.4
2,386,449	-				-0.6
2,386,450	+				-1.8
2,386,450	+				+0.2
2,386,450	+				-0.2
2,386,450	+				-1.5
2,386,450	+				+0.4
2,386,450	+				-0.4
2,386,450	+				-1.8
2,386,450	+				-1.1
2,386,450	+				-2.5
2,386,450	+				+1.2
2,386,451	-				-1.4
2,386,451	-				+0.2
2,386,451	-				-3.0
2,386,451	-				-1.6
2,386,451	-				-0.8
2,386,451	-				-0.4
2,386,451	-				+0.2
2,386,451	-				-0.2
2,386,451	-				-1.2
2,386,451	-				+2.8
2,386,451	-				+0.4
2,386,451	-				+1.2
2,386,451	-				-0.8
2,386,452	+				-2.1
2,386,452	+				+2.2
2,386,452	+				-1.8
2,386,453	-				-1.1
2,386,453	-				+0.7
2,386,635	+		DZA65_RS11250	0.14	+0.2
2,386,635	+		DZA65_RS11250	0.14	-3.1
2,386,636	-		DZA65_RS11250	0.14	-2.0
2,386,636	-		DZA65_RS11250	0.14	-1.5
2,386,636	-		DZA65_RS11250	0.14	+0.2
2,386,636	-		DZA65_RS11250	0.14	-1.8
2,386,636	-		DZA65_RS11250	0.14	-0.4
2,386,636	-		DZA65_RS11250	0.14	+0.1
2,386,636	-		DZA65_RS11250	0.14	-1.6
2,386,636	-		DZA65_RS11250	0.14	+0.7
2,386,636	-		DZA65_RS11250	0.14	-1.8
2,386,644	-		DZA65_RS11250	0.17	-2.3
2,386,902	+				+1.2
2,386,902	+				+0.2
2,386,902	+				-1.3
2,386,903	-				-1.3
2,386,903	-				-1.5
2,386,903	-				-0.6
2,386,903	-				-0.1
2,386,903	-				-2.6
2,386,918	+				-1.0
2,386,939	-				-1.4
2,386,956	+				+0.4
2,386,956	+				-2.3
2,387,106	-				-1.9
2,387,123	+				+1.0
2,387,124	-				-0.1
2,387,193	+		DZA65_RS22890	0.16	+2.8
2,387,193	+		DZA65_RS22890	0.16	-0.1
2,387,193	+		DZA65_RS22890	0.16	-0.1
2,387,193	+		DZA65_RS22890	0.16	+1.2
2,387,193	+		DZA65_RS22890	0.16	-1.4
2,387,193	+		DZA65_RS22890	0.16	-0.7
2,387,194	-		DZA65_RS22890	0.17	+1.6
2,387,194	-		DZA65_RS22890	0.17	+1.7
2,387,237	+		DZA65_RS22890	0.34	-1.7
2,387,272	-		DZA65_RS22890	0.48	-0.1
2,387,274	-		DZA65_RS22890	0.49	-1.7
2,387,315	+		DZA65_RS22890	0.65	-0.8
2,387,315	+		DZA65_RS22890	0.65	-2.3
2,387,316	-		DZA65_RS22890	0.66	+0.2
2,387,317	+		DZA65_RS22890	0.66	-0.7
2,387,317	+		DZA65_RS22890	0.66	+0.3
2,387,318	-		DZA65_RS22890	0.67	-1.5
2,387,318	-		DZA65_RS22890	0.67	-0.4
2,387,318	-		DZA65_RS22890	0.67	-0.9
2,387,328	+		DZA65_RS22890	0.71	+1.2
2,387,328	+		DZA65_RS22890	0.71	-1.4
2,387,329	-		DZA65_RS22890	0.71	-0.6
2,387,329	-		DZA65_RS22890	0.71	-0.1
2,387,352	+		DZA65_RS22890	0.80	+0.2
2,387,353	-		DZA65_RS22890	0.81	+0.7
2,387,353	-		DZA65_RS22890	0.81	+0.8
2,387,353	-		DZA65_RS22890	0.81	-0.4
2,387,355	-		DZA65_RS22890	0.82	-0.0
2,387,364	-		DZA65_RS22890	0.85	-1.3
2,387,419	+				+1.1
2,387,466	+				+0.8
2,387,466	+				+1.5
2,387,466	+				-0.4
2,387,467	-				-1.4
2,387,475	+				-2.3
2,387,475	+				+0.2
2,387,476	-				+1.2
2,387,477	+				+1.6
2,387,477	+				+0.0
2,387,477	+				+2.5
2,387,477	+				+0.4
2,387,477	+				+0.6
2,387,477	+				+0.6
2,387,478	-				-0.8
2,387,478	-				-0.8
2,387,478	-				-2.4
2,387,478	-				-0.8
2,387,478	-				+1.2
2,387,478	-				-0.4
2,387,478	-				-1.4
2,387,478	-				+0.9
2,387,478	-				-2.3
2,387,478	-				+2.3
2,387,478	-				+1.2
2,387,478	-				+2.8
2,387,480	-				-1.6
2,387,488	+				-1.4
2,387,488	+				-0.6
2,387,489	-				+0.6
2,387,532	-				-1.4
2,387,563	-				-0.4
2,387,585	-				+0.2
2,387,625	-				+0.0
2,387,625	-				+0.4
2,387,625	-				-0.6
2,387,636	-				-0.4
2,387,636	-				+0.0
2,387,649	+				+2.3
2,387,688	+				-1.4
2,387,689	-				-0.2
2,387,689	-				-0.2
2,387,693	+				+0.4
2,387,693	+				-0.2
2,387,694	-				-1.6
2,387,694	-				+1.2
2,387,793	-				-1.3
2,387,828	-				-0.0
2,387,848	-				+1.2