Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04550 and DZA65_RS04555 are separated by 333 nucleotides DZA65_RS04555 and DZA65_RS04560 are separated by 98 nucleotides
DZA65_RS04550: DZA65_RS04550 - rhamnogalacturonate lyase, at 948,065 to 949,795
_RS04550
DZA65_RS04555: DZA65_RS04555 - TIGR00645 family protein, at 950,129 to 950,662
_RS04555
DZA65_RS04560: DZA65_RS04560 - molybdopterin-dependent oxidoreductase, at 950,761 to 953,022
_RS04560
Position (kb) 950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 949.153 kb on - strand, within DZA65_RS04550 at 949.171 kb on - strand, within DZA65_RS04550 at 949.185 kb on + strand, within DZA65_RS04550 at 949.186 kb on - strand, within DZA65_RS04550 at 949.186 kb on - strand, within DZA65_RS04550 at 949.194 kb on + strand, within DZA65_RS04550 at 949.194 kb on + strand, within DZA65_RS04550 at 949.195 kb on - strand, within DZA65_RS04550 at 949.195 kb on - strand, within DZA65_RS04550 at 949.260 kb on + strand, within DZA65_RS04550 at 949.288 kb on + strand, within DZA65_RS04550 at 949.289 kb on - strand, within DZA65_RS04550 at 949.289 kb on - strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.386 kb on + strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.387 kb on - strand, within DZA65_RS04550 at 949.428 kb on + strand, within DZA65_RS04550 at 949.429 kb on - strand, within DZA65_RS04550 at 949.439 kb on + strand, within DZA65_RS04550 at 949.439 kb on + strand, within DZA65_RS04550 at 949.439 kb on + strand, within DZA65_RS04550 at 949.440 kb on - strand, within DZA65_RS04550 at 949.440 kb on - strand, within DZA65_RS04550 at 949.465 kb on - strand, within DZA65_RS04550 at 949.465 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.543 kb on - strand, within DZA65_RS04550 at 949.545 kb on + strand, within DZA65_RS04550 at 949.546 kb on - strand, within DZA65_RS04550 at 949.546 kb on - strand, within DZA65_RS04550 at 949.554 kb on + strand, within DZA65_RS04550 at 949.555 kb on - strand, within DZA65_RS04550 at 949.782 kb on - strand at 949.795 kb on + strand at 949.796 kb on - strand at 949.835 kb on + strand at 949.835 kb on + strand at 949.836 kb on - strand at 949.856 kb on + strand at 949.856 kb on + strand at 949.856 kb on + strand at 949.856 kb on + strand at 949.857 kb on - strand at 949.857 kb on - strand at 949.857 kb on - strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.954 kb on + strand at 949.955 kb on - strand at 949.955 kb on - strand at 949.955 kb on - strand at 949.955 kb on - strand at 950.003 kb on + strand at 950.047 kb on - strand at 950.067 kb on - strand at 950.114 kb on + strand at 950.114 kb on + strand at 950.129 kb on - strand at 950.149 kb on + strand at 950.150 kb on - strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.156 kb on + strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.157 kb on - strand at 950.208 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.543 kb on + strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.544 kb on - strand, within DZA65_RS04555 at 950.551 kb on - strand, within DZA65_RS04555 at 950.585 kb on - strand, within DZA65_RS04555 at 950.653 kb on + strand at 950.653 kb on + strand at 950.654 kb on - strand at 950.654 kb on - strand at 950.654 kb on - strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.660 kb on + strand at 950.661 kb on - strand at 950.661 kb on - strand at 950.661 kb on - strand at 950.840 kb on - strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.842 kb on + strand at 950.843 kb on - strand at 950.843 kb on - strand at 950.970 kb on - strand at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.050 kb on + strand, within DZA65_RS04560 at 951.051 kb on - strand, within DZA65_RS04560 at 951.051 kb on - strand, within DZA65_RS04560 at 951.051 kb on - strand, within DZA65_RS04560 at 951.141 kb on + strand, within DZA65_RS04560 at 951.142 kb on - strand, within DZA65_RS04560 at 951.142 kb on - strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.256 kb on + strand, within DZA65_RS04560 at 951.257 kb on - strand, within DZA65_RS04560 at 951.257 kb on - strand, within DZA65_RS04560 at 951.352 kb on - strand, within DZA65_RS04560 at 951.360 kb on - strand, within DZA65_RS04560 at 951.360 kb on - strand, within DZA65_RS04560 at 951.360 kb on - strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.434 kb on + strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand, within DZA65_RS04560 at 951.435 kb on - strand at 951.435 kb on - strand, within DZA65_RS04560 at 951.522 kb on + strand, within DZA65_RS04560 at 951.523 kb on - strand, within DZA65_RS04560 at 951.527 kb on + strand, within DZA65_RS04560 at 951.527 kb on + strand, within DZA65_RS04560 at 951.528 kb on - strand, within DZA65_RS04560 at 951.555 kb on + strand, within DZA65_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 949,153 - DZA65_RS04550 0.63 +1.4 949,171 - DZA65_RS04550 0.64 -1.1 949,185 + DZA65_RS04550 0.65 -0.7 949,186 - DZA65_RS04550 0.65 +1.2 949,186 - DZA65_RS04550 0.65 +0.2 949,194 + DZA65_RS04550 0.65 +2.2 949,194 + DZA65_RS04550 0.65 +0.1 949,195 - DZA65_RS04550 0.65 -0.7 949,195 - DZA65_RS04550 0.65 +0.4 949,260 + DZA65_RS04550 0.69 +0.4 949,288 + DZA65_RS04550 0.71 -1.4 949,289 - DZA65_RS04550 0.71 -3.1 949,289 - DZA65_RS04550 0.71 -0.9 949,386 + DZA65_RS04550 0.76 -1.1 949,386 + DZA65_RS04550 0.76 -0.6 949,386 + DZA65_RS04550 0.76 -0.1 949,386 + DZA65_RS04550 0.76 -1.7 949,386 + DZA65_RS04550 0.76 +0.0 949,387 - DZA65_RS04550 0.76 +0.2 949,387 - DZA65_RS04550 0.76 -0.6 949,387 - DZA65_RS04550 0.76 -1.5 949,387 - DZA65_RS04550 0.76 +1.7 949,387 - DZA65_RS04550 0.76 +1.6 949,428 + DZA65_RS04550 0.79 -1.7 949,429 - DZA65_RS04550 0.79 +0.4 949,439 + DZA65_RS04550 0.79 +0.4 949,439 + DZA65_RS04550 0.79 +0.2 949,439 + DZA65_RS04550 0.79 +1.4 949,440 - DZA65_RS04550 0.79 -1.1 949,440 - DZA65_RS04550 0.79 -2.7 949,465 - DZA65_RS04550 0.81 -0.1 949,465 - DZA65_RS04550 0.81 -1.4 949,543 - DZA65_RS04550 0.85 -0.6 949,543 - DZA65_RS04550 0.85 +1.1 949,543 - DZA65_RS04550 0.85 +0.4 949,543 - DZA65_RS04550 0.85 +0.7 949,545 + DZA65_RS04550 0.85 +0.9 949,546 - DZA65_RS04550 0.86 -1.6 949,546 - DZA65_RS04550 0.86 +0.8 949,554 + DZA65_RS04550 0.86 -0.9 949,555 - DZA65_RS04550 0.86 -1.9 949,782 - -1.7 949,795 + -1.4 949,796 - -1.4 949,835 + +0.7 949,835 + +0.1 949,836 - -0.0 949,856 + -0.9 949,856 + -0.6 949,856 + -0.1 949,856 + +0.7 949,857 - +3.2 949,857 - +0.1 949,857 - -1.1 949,954 + -0.1 949,954 + +0.3 949,954 + -1.1 949,954 + +0.4 949,954 + +0.4 949,954 + -1.7 949,954 + +0.0 949,954 + -1.1 949,955 - -1.9 949,955 - -0.7 949,955 - -1.6 949,955 - +1.0 950,003 + +1.3 950,047 - +0.2 950,067 - -1.9 950,114 + -0.2 950,114 + -0.7 950,129 - -1.4 950,149 + -1.7 950,150 - -0.6 950,156 + +0.4 950,156 + +2.8 950,156 + +0.9 950,156 + +0.0 950,156 + -0.6 950,157 - -2.5 950,157 - -0.6 950,157 - +2.4 950,157 - +0.0 950,157 - -0.6 950,157 - +0.2 950,157 - -0.1 950,157 - +1.4 950,157 - -1.4 950,208 + DZA65_RS04555 0.15 -0.6 950,543 + DZA65_RS04555 0.78 +0.4 950,543 + DZA65_RS04555 0.78 -1.6 950,543 + DZA65_RS04555 0.78 -0.4 950,543 + DZA65_RS04555 0.78 +0.0 950,543 + DZA65_RS04555 0.78 -1.1 950,543 + DZA65_RS04555 0.78 -0.5 950,544 - DZA65_RS04555 0.78 +0.9 950,544 - DZA65_RS04555 0.78 +0.4 950,544 - DZA65_RS04555 0.78 -1.4 950,544 - DZA65_RS04555 0.78 +1.1 950,544 - DZA65_RS04555 0.78 -0.6 950,551 - DZA65_RS04555 0.79 -1.1 950,585 - DZA65_RS04555 0.85 +1.7 950,653 + -2.3 950,653 + +0.6 950,654 - -0.6 950,654 - +1.0 950,654 - -1.7 950,660 + +1.8 950,660 + -2.0 950,660 + -0.7 950,660 + -1.1 950,660 + -1.4 950,660 + -1.0 950,661 - -0.4 950,661 - +2.4 950,661 - -0.1 950,840 - -1.6 950,842 + +1.8 950,842 + -2.0 950,842 + +1.4 950,842 + -0.8 950,842 + -2.6 950,842 + -0.6 950,843 - -2.5 950,843 - +0.9 950,970 - -0.9 951,050 + DZA65_RS04560 0.13 -2.0 951,050 + DZA65_RS04560 0.13 +0.1 951,050 + DZA65_RS04560 0.13 -1.1 951,050 + DZA65_RS04560 0.13 -1.4 951,050 + DZA65_RS04560 0.13 -0.1 951,050 + DZA65_RS04560 0.13 -1.3 951,050 + DZA65_RS04560 0.13 -0.1 951,050 + DZA65_RS04560 0.13 +0.4 951,050 + DZA65_RS04560 0.13 -0.6 951,050 + DZA65_RS04560 0.13 -1.8 951,050 + DZA65_RS04560 0.13 +1.4 951,051 - DZA65_RS04560 0.13 +1.4 951,051 - DZA65_RS04560 0.13 +0.9 951,051 - DZA65_RS04560 0.13 +0.4 951,141 + DZA65_RS04560 0.17 +0.4 951,142 - DZA65_RS04560 0.17 -0.1 951,142 - DZA65_RS04560 0.17 -1.7 951,256 + DZA65_RS04560 0.22 -0.1 951,256 + DZA65_RS04560 0.22 +0.9 951,256 + DZA65_RS04560 0.22 -0.1 951,256 + DZA65_RS04560 0.22 -1.3 951,257 - DZA65_RS04560 0.22 -0.1 951,257 - DZA65_RS04560 0.22 -2.0 951,352 - DZA65_RS04560 0.26 -0.0 951,360 - DZA65_RS04560 0.26 -1.4 951,360 - DZA65_RS04560 0.26 +0.4 951,360 - DZA65_RS04560 0.26 +0.7 951,434 + DZA65_RS04560 0.30 +1.4 951,434 + DZA65_RS04560 0.30 +0.4 951,434 + DZA65_RS04560 0.30 -0.6 951,434 + DZA65_RS04560 0.30 -0.1 951,434 + DZA65_RS04560 0.30 -1.1 951,435 - DZA65_RS04560 0.30 -0.7 951,435 - DZA65_RS04560 0.30 +0.1 951,435 - DZA65_RS04560 0.30 -2.2 951,435 - DZA65_RS04560 0.30 -1.9 951,435 - -0.1 951,435 - DZA65_RS04560 0.30 -0.4 951,522 + DZA65_RS04560 0.34 -1.4 951,523 - DZA65_RS04560 0.34 +0.7 951,527 + DZA65_RS04560 0.34 -2.0 951,527 + DZA65_RS04560 0.34 +0.0 951,528 - DZA65_RS04560 0.34 -0.0 951,555 + DZA65_RS04560 0.35 +0.5
Or see this region's nucleotide sequence