Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02885

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02880 and DZA65_RS02885 are separated by 129 nucleotidesDZA65_RS02885 and DZA65_RS02890 are separated by 109 nucleotidesDZA65_RS02890 and DZA65_RS02895 are separated by 175 nucleotides DZA65_RS02880: DZA65_RS02880 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 618,057 to 620,534 _RS02880 DZA65_RS02885: DZA65_RS02885 - diacylglycerol kinase, at 620,664 to 621,029 _RS02885 DZA65_RS02890: DZA65_RS02890 - repressor LexA, at 621,139 to 621,750 _RS02890 DZA65_RS02895: DZA65_RS02895 - zinc uptake transcriptional repressor Zur, at 621,926 to 622,435 _RS02895 Position (kb) 620 621 622Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 620.593 kb on + strandat 620.593 kb on + strandat 620.625 kb on - strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.660 kb on - strandat 620.691 kb on - strandat 620.920 kb on - strandat 621.040 kb on - strandat 621.040 kb on - strandat 621.097 kb on + strandat 621.098 kb on - strandat 621.098 kb on - strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.100 kb on - strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.748 kb on + strandat 621.749 kb on - strandat 621.749 kb on - strandat 621.749 kb on - strandat 621.761 kb on + strandat 621.761 kb on + strandat 621.762 kb on - strandat 621.793 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.890 kb on + strandat 621.891 kb on - strandat 621.903 kb on + strandat 621.961 kb on + strandat 621.961 kb on + strandat 621.961 kb on + strandat 621.962 kb on - strandat 621.962 kb on - strandat 621.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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620,593 + -1.3
620,593 + -0.1
620,625 - -2.3
620,659 + -1.9
620,659 + +1.5
620,659 + +2.0
620,659 + +1.5
620,660 - -0.1
620,691 - -1.9
620,920 - -0.1
621,040 - +1.5
621,040 - -0.5
621,097 + +1.1
621,098 - -0.1
621,098 - +0.2
621,099 + -0.7
621,099 + -1.1
621,099 + +0.8
621,099 + +1.7
621,099 + -0.8
621,100 - -1.5
621,101 + -1.1
621,101 + -2.3
621,101 + -0.1
621,101 + -0.1
621,748 + -0.5
621,748 + -1.1
621,748 + +0.8
621,748 + -0.5
621,748 + -0.1
621,748 + -0.9
621,748 + -0.6
621,749 - -0.5
621,749 - -0.1
621,749 - -1.8
621,761 + -1.1
621,761 + +1.7
621,762 - -1.9
621,793 + -0.8
621,890 + +1.1
621,890 + +0.5
621,890 + -0.8
621,890 + -0.1
621,890 + +0.5
621,891 - -0.5
621,903 + -1.1
621,961 + -0.2
621,961 + -2.9
621,961 + +1.5
621,962 - +0.5
621,962 - -2.1
621,962 - -0.1

Or see this region's nucleotide sequence