Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00990

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00980 and DZA65_RS00985 are separated by 113 nucleotidesDZA65_RS00985 and DZA65_RS00990 are separated by 2 nucleotidesDZA65_RS00990 and DZA65_RS00995 are separated by 31 nucleotidesDZA65_RS00995 and DZA65_RS01000 are separated by 212 nucleotides DZA65_RS00980: DZA65_RS00980 - Sec-independent protein translocase subunit TatC, at 223,606 to 224,373 _RS00980 DZA65_RS00985: DZA65_RS00985 - 3'-5' ssDNA/RNA exonuclease TatD, at 224,487 to 225,281 _RS00985 DZA65_RS00990: DZA65_RS00990 - porphobilinogen synthase, at 225,284 to 226,306 _RS00990 DZA65_RS00995: DZA65_RS00995 - transcription/translation regulatory transformer protein RfaH, at 226,338 to 226,826 _RS00995 DZA65_RS01000: DZA65_RS01000 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 227,039 to 228,526 _RS01000 Position (kb) 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 224.311 kb on + strandat 224.311 kb on + strandat 224.312 kb on - strandat 224.312 kb on - strandat 224.405 kb on + strandat 224.405 kb on + strandat 224.406 kb on - strandat 224.406 kb on - strandat 224.640 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.894 kb on + strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.921 kb on + strand, within DZA65_RS00985at 224.938 kb on + strand, within DZA65_RS00985at 225.066 kb on - strand, within DZA65_RS00985at 225.105 kb on + strand, within DZA65_RS00985at 225.113 kb on - strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.131 kb on + strand, within DZA65_RS00985at 225.131 kb on + strand, within DZA65_RS00985at 225.132 kb on - strand, within DZA65_RS00985at 225.132 kb on - strand, within DZA65_RS00985at 225.173 kb on + strand, within DZA65_RS00985at 225.174 kb on - strand, within DZA65_RS00985at 225.174 kb on - strand, within DZA65_RS00985at 226.310 kb on + strandat 226.310 kb on + strandat 226.310 kb on + strandat 226.311 kb on - strandat 226.311 kb on - strandat 226.311 kb on - strandat 226.311 kb on - strandat 226.311 kb on - strandat 226.311 kb on - strandat 226.311 kb on - strandat 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.438 kb on + strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.439 kb on - strand, within DZA65_RS00995at 226.442 kb on + strand, within DZA65_RS00995at 226.442 kb on + strand, within DZA65_RS00995at 226.443 kb on - strand, within DZA65_RS00995at 226.479 kb on + strand, within DZA65_RS00995at 226.480 kb on - strand, within DZA65_RS00995at 226.514 kb on + strand, within DZA65_RS00995at 226.514 kb on + strand, within DZA65_RS00995at 226.515 kb on - strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.635 kb on + strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.636 kb on - strand, within DZA65_RS00995at 226.666 kb on + strand, within DZA65_RS00995at 226.666 kb on + strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.667 kb on - strand, within DZA65_RS00995at 226.711 kb on - strand, within DZA65_RS00995at 226.783 kb on - strandat 226.804 kb on + strandat 226.804 kb on + strandat 226.804 kb on + strandat 226.805 kb on - strandat 226.809 kb on + strandat 226.809 kb on + strandat 226.809 kb on + strandat 226.809 kb on + strandat 226.809 kb on + strandat 226.809 kb on + strandat 226.810 kb on - strandat 226.810 kb on - strandat 226.810 kb on - strandat 226.810 kb on - strandat 226.810 kb on - strandat 226.810 kb on - strandat 226.813 kb on + strandat 226.814 kb on - strandat 226.826 kb on + strandat 226.827 kb on - strandat 226.827 kb on - strandat 226.876 kb on + strandat 226.877 kb on - strandat 226.877 kb on - strandat 226.963 kb on + strandat 226.963 kb on + strandat 226.964 kb on - strandat 226.964 kb on - strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.001 kb on + strandat 227.002 kb on - strandat 227.002 kb on - strandat 227.003 kb on + strandat 227.003 kb on + strandat 227.003 kb on + strandat 227.003 kb on + strandat 227.003 kb on + strandat 227.003 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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224,311 + -1.4
224,311 + -1.0
224,312 - -0.4
224,312 - +1.6
224,405 + -1.8
224,405 + +0.3
224,406 - -0.1
224,406 - +0.0
224,640 + DZA65_RS00985 0.19 -0.4
224,746 + DZA65_RS00985 0.33 +0.9
224,746 + DZA65_RS00985 0.33 -0.3
224,746 + DZA65_RS00985 0.33 -0.0
224,894 + DZA65_RS00985 0.51 -0.7
224,895 - DZA65_RS00985 0.51 +0.6
224,895 - DZA65_RS00985 0.51 +0.9
224,895 - DZA65_RS00985 0.51 +0.0
224,895 - DZA65_RS00985 0.51 -0.4
224,921 + DZA65_RS00985 0.55 -3.2
224,938 + DZA65_RS00985 0.57 -2.7
225,066 - DZA65_RS00985 0.73 +2.1
225,105 + DZA65_RS00985 0.78 -2.4
225,113 - DZA65_RS00985 0.79 -1.7
225,124 + DZA65_RS00985 0.80 -1.0
225,124 + DZA65_RS00985 0.80 +1.1
225,124 + DZA65_RS00985 0.80 +0.4
225,124 + DZA65_RS00985 0.80 -0.8
225,124 + DZA65_RS00985 0.80 -2.4
225,124 + DZA65_RS00985 0.80 -1.2
225,124 + DZA65_RS00985 0.80 -0.4
225,124 + DZA65_RS00985 0.80 -1.6
225,124 + DZA65_RS00985 0.80 -1.0
225,124 + DZA65_RS00985 0.80 -2.1
225,124 + DZA65_RS00985 0.80 +1.3
225,124 + DZA65_RS00985 0.80 +0.6
225,124 + DZA65_RS00985 0.80 -0.8
225,125 - DZA65_RS00985 0.80 -0.2
225,125 - DZA65_RS00985 0.80 +1.6
225,125 - DZA65_RS00985 0.80 -1.0
225,125 - DZA65_RS00985 0.80 +2.5
225,125 - DZA65_RS00985 0.80 +0.6
225,125 - DZA65_RS00985 0.80 +0.7
225,125 - DZA65_RS00985 0.80 -1.0
225,125 - DZA65_RS00985 0.80 -1.0
225,125 - DZA65_RS00985 0.80 -1.9
225,125 - DZA65_RS00985 0.80 -0.4
225,125 - DZA65_RS00985 0.80 +0.9
225,131 + DZA65_RS00985 0.81 -1.3
225,131 + DZA65_RS00985 0.81 -2.7
225,132 - DZA65_RS00985 0.81 -0.6
225,132 - DZA65_RS00985 0.81 -2.2
225,173 + DZA65_RS00985 0.86 +1.6
225,174 - DZA65_RS00985 0.86 -2.5
225,174 - DZA65_RS00985 0.86 +1.6
226,310 + +0.0
226,310 + -1.7
226,310 + +0.0
226,311 - -1.3
226,311 - +1.2
226,311 - -0.7
226,311 - +1.6
226,311 - -1.0
226,311 - -0.4
226,311 - -1.1
226,438 + DZA65_RS00995 0.20 +0.9
226,438 + DZA65_RS00995 0.20 -1.9
226,438 + DZA65_RS00995 0.20 -1.4
226,438 + DZA65_RS00995 0.20 -0.4
226,438 + DZA65_RS00995 0.20 -0.8
226,438 + DZA65_RS00995 0.20 +0.6
226,438 + DZA65_RS00995 0.20 -2.2
226,438 + DZA65_RS00995 0.20 -2.0
226,438 + DZA65_RS00995 0.20 -0.4
226,438 + DZA65_RS00995 0.20 -1.4
226,438 + DZA65_RS00995 0.20 -1.6
226,438 + DZA65_RS00995 0.20 -1.1
226,438 + DZA65_RS00995 0.20 -1.7
226,438 + DZA65_RS00995 0.20 +0.0
226,438 + DZA65_RS00995 0.20 -2.2
226,438 + DZA65_RS00995 0.20 +1.1
226,438 + DZA65_RS00995 0.20 +0.2
226,438 + DZA65_RS00995 0.20 +0.0
226,439 - DZA65_RS00995 0.21 -1.2
226,439 - DZA65_RS00995 0.21 +0.9
226,439 - DZA65_RS00995 0.21 +0.0
226,439 - DZA65_RS00995 0.21 -2.1
226,439 - DZA65_RS00995 0.21 -1.8
226,439 - DZA65_RS00995 0.21 -1.8
226,439 - DZA65_RS00995 0.21 -1.2
226,439 - DZA65_RS00995 0.21 -1.7
226,439 - DZA65_RS00995 0.21 -1.6
226,439 - DZA65_RS00995 0.21 +0.1
226,439 - DZA65_RS00995 0.21 -2.8
226,442 + DZA65_RS00995 0.21 +0.8
226,442 + DZA65_RS00995 0.21 -1.2
226,443 - DZA65_RS00995 0.21 +2.0
226,479 + DZA65_RS00995 0.29 -1.2
226,480 - DZA65_RS00995 0.29 -1.6
226,514 + DZA65_RS00995 0.36 -0.7
226,514 + DZA65_RS00995 0.36 +0.6
226,515 - DZA65_RS00995 0.36 +0.3
226,635 + DZA65_RS00995 0.61 -2.0
226,635 + DZA65_RS00995 0.61 -0.2
226,635 + DZA65_RS00995 0.61 +0.0
226,635 + DZA65_RS00995 0.61 -0.6
226,635 + DZA65_RS00995 0.61 -0.7
226,635 + DZA65_RS00995 0.61 -1.4
226,635 + DZA65_RS00995 0.61 -2.1
226,635 + DZA65_RS00995 0.61 -2.1
226,635 + DZA65_RS00995 0.61 -2.0
226,635 + DZA65_RS00995 0.61 -1.4
226,635 + DZA65_RS00995 0.61 -0.7
226,635 + DZA65_RS00995 0.61 -1.0
226,635 + DZA65_RS00995 0.61 +0.8
226,636 - DZA65_RS00995 0.61 -1.0
226,636 - DZA65_RS00995 0.61 -0.7
226,636 - DZA65_RS00995 0.61 -0.5
226,636 - DZA65_RS00995 0.61 -0.0
226,636 - DZA65_RS00995 0.61 -0.4
226,636 - DZA65_RS00995 0.61 -1.4
226,636 - DZA65_RS00995 0.61 -2.1
226,636 - DZA65_RS00995 0.61 +2.1
226,636 - DZA65_RS00995 0.61 +0.4
226,636 - DZA65_RS00995 0.61 -0.2
226,636 - DZA65_RS00995 0.61 +1.6
226,636 - DZA65_RS00995 0.61 +0.0
226,636 - DZA65_RS00995 0.61 -0.4
226,636 - DZA65_RS00995 0.61 -0.4
226,636 - DZA65_RS00995 0.61 +0.0
226,666 + DZA65_RS00995 0.67 -2.2
226,666 + DZA65_RS00995 0.67 +0.8
226,667 - DZA65_RS00995 0.67 +0.6
226,667 - DZA65_RS00995 0.67 +1.6
226,667 - DZA65_RS00995 0.67 -0.6
226,667 - DZA65_RS00995 0.67 +1.3
226,667 - DZA65_RS00995 0.67 -2.6
226,667 - DZA65_RS00995 0.67 +0.7
226,667 - DZA65_RS00995 0.67 +0.3
226,667 - DZA65_RS00995 0.67 -0.4
226,711 - DZA65_RS00995 0.76 +0.0
226,783 - +4.2
226,804 + +1.6
226,804 + -0.7
226,804 + +0.1
226,805 - +0.6
226,809 + -2.3
226,809 + -0.8
226,809 + +0.0
226,809 + -1.8
226,809 + -1.2
226,809 + -1.4
226,810 - +0.6
226,810 - -0.7
226,810 - -2.4
226,810 - -1.4
226,810 - -1.2
226,810 - +0.9
226,813 + -1.4
226,814 - +2.5
226,826 + +0.8
226,827 - +0.9
226,827 - +0.7
226,876 + +0.0
226,877 - -0.4
226,877 - -1.6
226,963 + +0.5
226,963 + -0.1
226,964 - -2.1
226,964 - +0.5
227,001 + -1.5
227,001 + -0.7
227,001 + -1.0
227,001 + -0.2
227,001 + +0.0
227,001 + -1.4
227,001 + +0.9
227,001 + +1.3
227,001 + -1.4
227,002 - +0.9
227,002 - -0.8
227,003 + +0.0
227,003 + +0.0
227,003 + -1.0
227,003 + -0.3
227,003 + -0.4
227,003 + -2.2

Or see this region's nucleotide sequence