Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00595 and DZA65_RS00600 overlap by 4 nucleotides DZA65_RS00600 and DZA65_RS00605 are separated by 0 nucleotides DZA65_RS00605 and DZA65_RS00610 overlap by 1 nucleotides DZA65_RS00610 and DZA65_RS00615 overlap by 4 nucleotides
DZA65_RS00595: DZA65_RS00595 - ABC transporter permease, at 138,302 to 139,312
_RS00595
DZA65_RS00600: DZA65_RS00600 - ABC transporter permease, at 139,309 to 140,211
_RS00600
DZA65_RS00605: DZA65_RS00605 - ABC transporter ATP-binding protein, at 140,212 to 141,039
_RS00605
DZA65_RS00610: DZA65_RS00610 - ABC transporter ATP-binding protein, at 141,039 to 141,779
_RS00610
DZA65_RS00615: DZA65_RS00615 - serine hydrolase, at 141,776 to 143,287
_RS00615
Position (kb) 140
141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 139.228 kb on + strand at 139.228 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.283 kb on + strand at 139.283 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.493 kb on - strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.611 kb on + strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.887 kb on + strand, within DZA65_RS00600 at 140.209 kb on + strand at 140.209 kb on + strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.485 kb on - strand, within DZA65_RS00605 at 140.618 kb on + strand, within DZA65_RS00605 at 140.618 kb on + strand, within DZA65_RS00605 at 140.619 kb on - strand, within DZA65_RS00605 at 140.619 kb on - strand, within DZA65_RS00605 at 140.619 kb on - strand, within DZA65_RS00605 at 140.654 kb on - strand, within DZA65_RS00605 at 140.887 kb on + strand, within DZA65_RS00605 at 140.887 kb on + strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.930 kb on + strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.948 kb on - strand, within DZA65_RS00605 at 140.949 kb on + strand, within DZA65_RS00605 at 140.950 kb on - strand, within DZA65_RS00605 at 140.950 kb on - strand, within DZA65_RS00605 at 140.997 kb on + strand at 141.045 kb on - strand at 141.045 kb on - strand at 141.164 kb on + strand, within DZA65_RS00610 at 141.191 kb on + strand, within DZA65_RS00610 at 141.191 kb on + strand, within DZA65_RS00610 at 141.292 kb on - strand, within DZA65_RS00610 at 141.292 kb on - strand, within DZA65_RS00610 at 141.292 kb on - strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.327 kb on - strand, within DZA65_RS00610 at 141.381 kb on - strand, within DZA65_RS00610 at 141.502 kb on + strand, within DZA65_RS00610 at 141.502 kb on + strand, within DZA65_RS00610 at 141.502 kb on + strand at 141.502 kb on + strand, within DZA65_RS00610 at 141.503 kb on - strand, within DZA65_RS00610 at 141.503 kb on - strand, within DZA65_RS00610 at 141.503 kb on - strand, within DZA65_RS00610 at 141.590 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.745 kb on - strand at 141.745 kb on - strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.752 kb on - strand at 141.752 kb on - strand at 141.752 kb on - strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 139,228 + +0.3 139,228 + +1.0 139,250 + -1.4 139,250 + -0.7 139,250 + +2.9 139,250 + +1.2 139,250 + +1.0 139,250 + -2.6 139,250 + -0.6 139,251 - -2.9 139,251 - +0.6 139,251 - +0.3 139,251 - +0.8 139,251 - +0.3 139,251 - -0.0 139,251 - -1.6 139,251 - +0.6 139,251 - +1.3 139,283 + -2.1 139,283 + -1.7 139,318 + -1.7 139,318 + -0.3 139,318 + +2.6 139,318 + +0.8 139,318 + -0.7 139,318 + -0.6 139,318 + -2.0 139,318 + -0.4 139,318 + -1.6 139,319 - -0.4 139,319 - -0.0 139,319 - -0.8 139,319 - -1.4 139,319 - +1.6 139,319 - +1.9 139,319 - -1.2 139,319 - -1.4 139,319 - -0.4 139,319 - +0.5 139,493 - DZA65_RS00600 0.20 +3.7 139,608 + DZA65_RS00600 0.33 +0.3 139,608 + DZA65_RS00600 0.33 +1.3 139,608 + DZA65_RS00600 0.33 +1.3 139,608 + DZA65_RS00600 0.33 -1.0 139,609 - DZA65_RS00600 0.33 +3.4 139,609 - DZA65_RS00600 0.33 -2.2 139,609 - DZA65_RS00600 0.33 +1.3 139,611 + DZA65_RS00600 0.33 -1.4 139,612 - DZA65_RS00600 0.34 -1.4 139,612 - DZA65_RS00600 0.34 -1.4 139,612 - DZA65_RS00600 0.34 -1.2 139,612 - DZA65_RS00600 0.34 +1.3 139,612 - DZA65_RS00600 0.34 -1.1 139,612 - DZA65_RS00600 0.34 -2.7 139,612 - DZA65_RS00600 0.34 -0.1 139,612 - DZA65_RS00600 0.34 -0.3 139,612 - DZA65_RS00600 0.34 -0.2 139,612 - DZA65_RS00600 0.34 -0.4 139,705 - DZA65_RS00600 0.44 -0.4 139,705 - DZA65_RS00600 0.44 -0.7 139,887 + DZA65_RS00600 0.64 -0.0 140,209 + -0.6 140,209 + -2.3 140,210 - +1.3 140,210 - +2.6 140,485 - DZA65_RS00605 0.33 +2.2 140,618 + DZA65_RS00605 0.49 -0.4 140,618 + DZA65_RS00605 0.49 -1.7 140,619 - DZA65_RS00605 0.49 +1.1 140,619 - DZA65_RS00605 0.49 +0.2 140,619 - DZA65_RS00605 0.49 -0.4 140,654 - DZA65_RS00605 0.53 -0.0 140,887 + DZA65_RS00605 0.82 -1.0 140,887 + DZA65_RS00605 0.82 -0.0 140,888 - DZA65_RS00605 0.82 +1.0 140,888 - DZA65_RS00605 0.82 -0.4 140,888 - DZA65_RS00605 0.82 -1.6 140,888 - DZA65_RS00605 0.82 -0.0 140,888 - DZA65_RS00605 0.82 -1.4 140,930 + DZA65_RS00605 0.87 +2.2 140,931 - DZA65_RS00605 0.87 +1.9 140,931 - DZA65_RS00605 0.87 -0.8 140,931 - DZA65_RS00605 0.87 -0.4 140,931 - DZA65_RS00605 0.87 -1.0 140,931 - DZA65_RS00605 0.87 -0.4 140,931 - DZA65_RS00605 0.87 +0.6 140,931 - DZA65_RS00605 0.87 -0.0 140,947 + DZA65_RS00605 0.89 -0.4 140,947 + DZA65_RS00605 0.89 -1.0 140,947 + DZA65_RS00605 0.89 +1.3 140,947 + DZA65_RS00605 0.89 +1.6 140,948 - DZA65_RS00605 0.89 +1.6 140,949 + DZA65_RS00605 0.89 -1.2 140,950 - DZA65_RS00605 0.89 -1.2 140,950 - DZA65_RS00605 0.89 -0.0 140,997 + -1.2 141,045 - -1.2 141,045 - -0.6 141,164 + DZA65_RS00610 0.17 -0.8 141,191 + DZA65_RS00610 0.21 +1.3 141,191 + DZA65_RS00610 0.21 -0.7 141,292 - DZA65_RS00610 0.34 -1.6 141,292 - DZA65_RS00610 0.34 +0.6 141,292 - DZA65_RS00610 0.34 -0.9 141,326 + DZA65_RS00610 0.39 -0.6 141,326 + DZA65_RS00610 0.39 +0.4 141,326 + DZA65_RS00610 0.39 -0.6 141,326 + DZA65_RS00610 0.39 -0.6 141,326 + DZA65_RS00610 0.39 -0.0 141,326 + DZA65_RS00610 0.39 -2.3 141,327 - DZA65_RS00610 0.39 -0.4 141,381 - DZA65_RS00610 0.46 -0.7 141,502 + DZA65_RS00610 0.62 -0.7 141,502 + DZA65_RS00610 0.62 +0.6 141,502 + -0.0 141,502 + DZA65_RS00610 0.62 -1.0 141,503 - DZA65_RS00610 0.63 -1.0 141,503 - DZA65_RS00610 0.63 +0.2 141,503 - DZA65_RS00610 0.63 -1.0 141,590 + DZA65_RS00610 0.74 +0.6 141,600 + DZA65_RS00610 0.76 +0.6 141,600 + DZA65_RS00610 0.76 -2.7 141,600 + DZA65_RS00610 0.76 -1.5 141,600 + DZA65_RS00610 0.76 -1.1 141,600 + DZA65_RS00610 0.76 -1.0 141,600 + DZA65_RS00610 0.76 -2.8 141,600 + +0.6 141,600 + DZA65_RS00610 0.76 -1.0 141,600 + DZA65_RS00610 0.76 +0.9 141,600 + DZA65_RS00610 0.76 -1.2 141,600 + DZA65_RS00610 0.76 +1.0 141,600 + DZA65_RS00610 0.76 -0.4 141,600 + DZA65_RS00610 0.76 -3.4 141,600 + DZA65_RS00610 0.76 +1.6 141,600 + DZA65_RS00610 0.76 -0.0 141,600 + DZA65_RS00610 0.76 +0.6 141,600 + DZA65_RS00610 0.76 -0.3 141,600 + DZA65_RS00610 0.76 -1.9 141,600 + DZA65_RS00610 0.76 -2.8 141,600 + DZA65_RS00610 0.76 +0.4 141,600 + DZA65_RS00610 0.76 +0.6 141,600 + DZA65_RS00610 0.76 +0.5 141,600 + DZA65_RS00610 0.76 -0.2 141,600 + DZA65_RS00610 0.76 -2.2 141,600 + DZA65_RS00610 0.76 +1.2 141,600 + DZA65_RS00610 0.76 +0.8 141,600 + DZA65_RS00610 0.76 +1.2 141,600 + DZA65_RS00610 0.76 -0.4 141,600 + DZA65_RS00610 0.76 +0.9 141,600 + DZA65_RS00610 0.76 -0.3 141,600 + DZA65_RS00610 0.76 -1.4 141,601 - DZA65_RS00610 0.76 +0.4 141,601 - DZA65_RS00610 0.76 -1.2 141,601 - DZA65_RS00610 0.76 -1.9 141,601 - DZA65_RS00610 0.76 -1.2 141,601 - DZA65_RS00610 0.76 -0.7 141,601 - DZA65_RS00610 0.76 -0.0 141,601 - -0.2 141,601 - DZA65_RS00610 0.76 +1.1 141,601 - DZA65_RS00610 0.76 -0.4 141,601 - DZA65_RS00610 0.76 +0.6 141,601 - DZA65_RS00610 0.76 -0.8 141,601 - DZA65_RS00610 0.76 +0.3 141,601 - DZA65_RS00610 0.76 +1.6 141,601 - DZA65_RS00610 0.76 -1.4 141,601 - DZA65_RS00610 0.76 -1.4 141,601 - DZA65_RS00610 0.76 -0.2 141,601 - DZA65_RS00610 0.76 +0.5 141,601 - DZA65_RS00610 0.76 +0.6 141,601 - DZA65_RS00610 0.76 -0.6 141,601 - DZA65_RS00610 0.76 -0.9 141,601 - DZA65_RS00610 0.76 +0.6 141,601 - DZA65_RS00610 0.76 +2.5 141,601 - DZA65_RS00610 0.76 +2.7 141,602 + DZA65_RS00610 0.76 +0.7 141,602 + DZA65_RS00610 0.76 -0.2 141,602 + DZA65_RS00610 0.76 -1.7 141,602 + DZA65_RS00610 0.76 -0.0 141,602 + DZA65_RS00610 0.76 +0.6 141,602 + DZA65_RS00610 0.76 +1.6 141,602 + DZA65_RS00610 0.76 -0.7 141,602 + DZA65_RS00610 0.76 -2.5 141,602 + DZA65_RS00610 0.76 -1.7 141,602 + DZA65_RS00610 0.76 -1.2 141,603 - DZA65_RS00610 0.76 +0.3 141,603 - DZA65_RS00610 0.76 +0.4 141,603 - -0.4 141,603 - DZA65_RS00610 0.76 +0.6 141,603 - DZA65_RS00610 0.76 -0.7 141,603 - DZA65_RS00610 0.76 -1.0 141,603 - DZA65_RS00610 0.76 -0.7 141,603 - DZA65_RS00610 0.76 -1.0 141,605 + DZA65_RS00610 0.76 +0.3 141,605 + DZA65_RS00610 0.76 -1.0 141,605 + DZA65_RS00610 0.76 -0.3 141,605 + DZA65_RS00610 0.76 +0.9 141,605 + DZA65_RS00610 0.76 -2.5 141,605 + DZA65_RS00610 0.76 -0.4 141,606 - DZA65_RS00610 0.77 -1.9 141,606 - DZA65_RS00610 0.77 -1.9 141,606 - DZA65_RS00610 0.77 -0.7 141,606 - DZA65_RS00610 0.77 +1.4 141,618 - DZA65_RS00610 0.78 -1.1 141,618 - DZA65_RS00610 0.78 -0.7 141,618 - DZA65_RS00610 0.78 +1.3 141,618 - DZA65_RS00610 0.78 +0.4 141,745 - -0.0 141,745 - -0.2 141,751 + -0.9 141,751 + -0.7 141,751 + -0.2 141,751 + -0.6 141,752 - -1.2 141,752 - -0.3 141,752 - +1.9 141,783 + +0.3 141,783 + -1.0 141,783 + +0.4 141,783 + -1.9 141,783 + -0.3 141,783 + -0.7 141,783 + -0.9 141,783 + -1.4 141,783 + -1.2 141,783 + -0.4 141,783 + -2.4 141,783 + +0.8 141,783 + -1.0 141,784 - +1.0 141,784 - +0.3 141,784 - -0.0 141,784 - +0.5 141,784 - +0.6 141,784 - +0.9 141,784 - -1.4 141,784 - +1.3
Or see this region's nucleotide sequence