Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22105

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Norland
				remove
4,778,409	+	DZA65_RS22100	0.38	-1.2
4,778,409	+	DZA65_RS22100	0.38	+0.1
4,778,410	-	DZA65_RS22100	0.38	+0.2
4,778,410	-	DZA65_RS22100	0.38	-0.2
4,778,410	-	DZA65_RS22100	0.38	+0.5
4,778,410	-	DZA65_RS22100	0.38	-1.4
4,778,437	+	DZA65_RS22100	0.41	-1.6
4,778,453	+	DZA65_RS22100	0.42	-1.1
4,778,453	+	DZA65_RS22100	0.42	-0.8
4,778,453	+	DZA65_RS22100	0.42	+0.5
4,778,453	+	DZA65_RS22100	0.42	-0.0
4,778,453	+	DZA65_RS22100	0.42	-1.1
4,778,454	-	DZA65_RS22100	0.42	+0.9
4,778,454	-	DZA65_RS22100	0.42	+1.2
4,778,454	-	DZA65_RS22100	0.42	-1.4
4,778,454	-	DZA65_RS22100	0.42	-0.7
4,778,560	+	DZA65_RS22100	0.51	-0.5
4,778,560	+	DZA65_RS22100	0.51	-1.4
4,778,560	+	DZA65_RS22100	0.51	-0.8
4,778,561	-	DZA65_RS22100	0.51	+0.2
4,778,561	-	DZA65_RS22100	0.51	-0.0
4,778,561	-	DZA65_RS22100	0.51	-0.0
4,779,030	+			-1.8
4,779,030	+			-0.4
4,779,030	+			-0.7
4,779,030	+			-0.2
4,779,030	+			-1.1
4,779,030	+			-1.4
4,779,030	+			-0.0
4,779,030	+			-0.4
4,779,031	-			-1.1
4,779,031	-			+1.2
4,779,031	-			+0.9
4,779,033	+			-1.6
4,779,033	+			+0.2
4,779,033	+			+1.2
4,779,033	+			+1.2
4,779,033	+			-0.8
4,779,033	+			-0.4
4,779,033	+			+1.6
4,779,033	+			+0.9
4,779,033	+			+1.2
4,779,033	+			+1.9
4,779,033	+			-0.1
4,779,033	+			-0.2
4,779,033	+			+1.0
4,779,034	-			-0.2
4,779,034	-			-1.8
4,779,034	-			-1.4
4,779,034	-			-1.2
4,779,034	-			+2.4
4,779,034	-			+1.2
4,779,034	-			-0.4
4,779,034	-			+1.5
4,779,034	-			+0.2
4,779,034	-			+0.4
4,779,034	-			+0.7
4,779,034	-			+4.7
4,779,037	+			-1.6
4,779,037	+			-0.6
4,779,037	+			-2.3
4,779,038	-			-0.9
4,779,099	-			-0.2
4,779,119	+			+0.8
4,779,119	+			-1.1
4,779,119	+			+1.8
4,779,119	+			-0.8
4,779,119	+			-0.5
4,779,119	+			-0.4
4,779,119	+			+0.7
4,779,119	+			+1.7
4,779,119	+			-0.2
4,779,119	+			-2.1
4,779,119	+			+0.1
4,779,119	+			+0.9
4,779,119	+			-1.8
4,779,119	+			-0.7
4,779,119	+			-1.2
4,779,119	+			-0.8
4,779,119	+			-0.7
4,779,119	+			-1.6
4,779,119	+			-2.1
4,779,119	+			+1.9
4,779,119	+			+0.3
4,779,119	+			-1.4
4,779,119	+			-1.7
4,779,120	-			+1.5
4,779,120	-			+2.2
4,779,120	-			-1.3
4,779,120	-			-0.7
4,779,120	-			-2.5
4,779,120	-			+0.7
4,779,120	-			-0.8
4,779,120	-			+0.7
4,779,120	-			+0.6
4,779,120	-			-1.0
4,779,120	-			+0.9
4,779,173	+			+0.0
4,779,173	+			-1.1
4,779,173	+			+0.2
4,779,173	+			+0.6
4,779,173	+			+0.6
4,779,174	-			-1.8
4,779,174	-			-0.7
4,779,174	-			+1.2
4,779,174	-			+0.6
4,779,174	-			+0.8
4,779,174	-			+0.2
4,779,174	-			+0.8
4,779,174	-			+0.6
4,779,174	-			-0.8
4,779,213	+			-2.1
4,779,213	+			-0.5
4,779,213	+			-0.5
4,779,216	+			+1.2
4,779,216	+			-0.1
4,779,216	+			+2.0
4,779,216	+			-0.0
4,779,216	+			-2.4
4,779,216	+			+0.2
4,779,216	+			+5.7
4,779,216	+			-2.2
4,779,217	-			-1.2
4,779,217	-			-1.1
4,779,217	-			-0.4
4,779,217	-			+0.7
4,779,217	-			+2.4
4,779,217	-			-0.4
4,779,217	-			-0.4
4,779,217	-			+0.5
4,779,217	-			-0.1
4,779,220	+			-1.1
4,779,221	-			-1.1
4,779,221	-			-0.6
4,779,221	-			-1.1
4,779,221	-			-0.8
4,779,221	-			-2.8
4,779,235	+			+1.2
4,779,261	+			-2.0
4,779,262	-			-0.1
4,779,262	-			-0.1
4,779,262	-			-0.2
4,779,288	+			-0.4
4,779,566	+	DZA65_RS22105	0.35	+0.9
4,779,566	+	DZA65_RS22105	0.35	+0.7
4,779,567	-	DZA65_RS22105	0.36	-1.9
4,779,567	-	DZA65_RS22105	0.36	+0.2
4,779,567	-	DZA65_RS22105	0.36	+0.1
4,779,567	-	DZA65_RS22105	0.36	-0.8
4,779,629	+	DZA65_RS22105	0.43	+0.3
4,779,629	+	DZA65_RS22105	0.43	-0.2
4,779,629	+	DZA65_RS22105	0.43	-0.4
4,779,630	-	DZA65_RS22105	0.43	+0.2
4,779,667	+	DZA65_RS22105	0.47	-1.6
4,779,668	-	DZA65_RS22105	0.47	-0.3
4,779,668	-	DZA65_RS22105	0.47	-1.4
4,779,668	-	DZA65_RS22105	0.47	+1.0
4,779,798	+	DZA65_RS22105	0.62	-0.4
4,779,798	+	DZA65_RS22105	0.62	-1.4
4,779,798	+	DZA65_RS22105	0.62	+0.5
4,779,798	+	DZA65_RS22105	0.62	-0.4
4,779,798	+	DZA65_RS22105	0.62	+2.2
4,779,798	+	DZA65_RS22105	0.62	-1.6
4,779,798	+	DZA65_RS22105	0.62	+1.2
4,779,798	+	DZA65_RS22105	0.62	-2.1
4,779,798	+	DZA65_RS22105	0.62	+0.3
4,779,799	-	DZA65_RS22105	0.62	+2.2
4,779,799	-	DZA65_RS22105	0.62	+1.2
4,779,799	-	DZA65_RS22105	0.62	-0.7
4,779,799	-	DZA65_RS22105	0.62	+0.5
4,779,799	-	DZA65_RS22105	0.62	-0.8
4,779,799	-	DZA65_RS22105	0.62	+1.8
4,779,799	-	DZA65_RS22105	0.62	+0.6
4,779,799	-	DZA65_RS22105	0.62	-1.0
4,779,799	-	DZA65_RS22105	0.62	+1.9
4,779,799	-	DZA65_RS22105	0.62	-1.5
4,779,799	-	DZA65_RS22105	0.62	+0.2
4,779,799	-	DZA65_RS22105	0.62	-0.2
4,779,799	-	DZA65_RS22105	0.62	+0.2
4,779,863	+	DZA65_RS22105	0.69	+1.2
4,779,863	+			-0.8
4,779,863	+	DZA65_RS22105	0.69	+0.7
4,779,863	+	DZA65_RS22105	0.69	-0.4
4,779,863	+	DZA65_RS22105	0.69	+1.1
4,779,864	-	DZA65_RS22105	0.69	-1.1
4,779,944	+	DZA65_RS22105	0.78	+0.2
4,780,044	+	DZA65_RS22105	0.89	+1.2
4,780,100	+			+1.0
4,780,101	-			-0.8
4,780,101	-			-0.5
4,780,110	+			+0.4
4,780,111	-			+2.3
4,780,111	-			+0.6
4,780,111	-			-2.0
4,780,169	-			+0.1
4,780,169	-			-2.0
4,780,169	-			+1.5
4,780,252	+			+2.2
4,780,253	-			+0.8
4,780,265	+			-0.4
4,780,265	+			+1.2
4,780,265	+			-2.2
4,780,265	+			-1.1
4,780,265	+			+0.2
4,780,266	-			-1.6
4,780,266	-			+2.7
4,780,266	-			-1.4
4,780,266	-			-0.4
4,780,266	-			+0.8
4,780,266	-			+1.2
4,780,268	+			-0.8
4,780,268	+			-1.1
4,780,268	+			-1.4
4,780,268	+			-0.1
4,780,268	+			-1.4
4,780,268	+			+2.8
4,780,268	+			+0.2
4,780,268	+			-3.0
4,780,268	+			-1.2
4,780,268	+			-0.8
4,780,268	+			+1.6
4,780,268	+			-1.1
4,780,268	+			+0.9
4,780,268	+			-1.4
4,780,269	-			+1.7
4,780,269	-			-1.5
4,780,269	-			+0.6
4,780,269	-			+2.1
4,780,269	-			-0.9
4,780,269	-			+0.0
4,780,269	-			-0.2
4,780,269	-			+0.0
4,780,269	-			+0.1
4,780,269	-			+0.2
4,780,269	-			-2.6
4,780,269	-			+1.4
4,780,269	-			-0.7
4,780,270	+			+0.2
4,780,284	+			-1.8
4,780,284	+			-0.2
4,780,284	+			+0.5
4,780,284	+			-0.9
4,780,284	+			-3.0
4,780,284	+			+0.8
4,780,285	-			-1.1
4,780,285	-			+1.4
4,780,285	-			+1.2
4,780,285	-			+2.0
4,780,285	-			-3.0
4,780,286	+			-0.9
4,780,321	+			-1.5
4,780,322	-			-0.7
4,780,322	-			+1.5
4,780,322	-			-2.1
4,780,356	+			-1.8
4,780,390	+			-0.1
4,780,391	-			-0.8
4,780,391	-			+0.4
4,780,412	+			+1.1
4,780,413	-			+0.6
4,780,413	-			-2.0
4,780,423	+			+0.2
4,780,423	+			-1.4
4,780,423	+			-0.4
4,780,423	+			-0.4
4,780,423	+			-0.1
4,780,423	+			-0.2
4,780,424	-			+2.9
4,780,424	-			+0.7
4,780,424	-			+0.3
4,780,424	-			+0.1
4,780,424	-			-0.1
4,780,424	-			-1.8
4,780,494	+			-0.5
4,780,494	+			-1.7
4,780,494	+			+0.4
4,780,495	-			+1.2
4,780,495	-			+0.8
4,780,495	-			+0.5
4,780,495	-			-0.5
4,780,495	-			-0.7
4,780,604	+	DZA65_RS22110	0.16	+1.2
4,780,605	-	DZA65_RS22110	0.16	-1.8
4,780,605	-	DZA65_RS22110	0.16	+0.7
4,780,605	-	DZA65_RS22110	0.16	+0.2
4,780,608	+	DZA65_RS22110	0.17	+0.8
4,780,608	+	DZA65_RS22110	0.17	+0.8
4,780,608	+	DZA65_RS22110	0.17	+0.9
4,780,608	+	DZA65_RS22110	0.17	+0.6
4,780,608	+	DZA65_RS22110	0.17	+1.2
4,780,608	+	DZA65_RS22110	0.17	-0.6
4,780,608	+	DZA65_RS22110	0.17	-0.4
4,780,608	+	DZA65_RS22110	0.17	-0.4
4,780,608	+	DZA65_RS22110	0.17	+1.7
4,780,608	+	DZA65_RS22110	0.17	-0.4
4,780,608	+	DZA65_RS22110	0.17	-0.0
4,780,608	+	DZA65_RS22110	0.17	+0.6
4,780,608	+	DZA65_RS22110	0.17	+1.2
4,780,608	+	DZA65_RS22110	0.17	-1.1
4,780,608	+	DZA65_RS22110	0.17	+1.0
4,780,608	+	DZA65_RS22110	0.17	-1.1
4,780,608	+	DZA65_RS22110	0.17	-0.1
4,780,608	+	DZA65_RS22110	0.17	+2.5
4,780,608	+	DZA65_RS22110	0.17	-0.8
4,780,608	+	DZA65_RS22110	0.17	-1.0
4,780,608	+	DZA65_RS22110	0.17	-0.4
4,780,608	+	DZA65_RS22110	0.17	+1.2
4,780,608	+	DZA65_RS22110	0.17	+0.6
4,780,608	+	DZA65_RS22110	0.17	+1.8
4,780,608	+	DZA65_RS22110	0.17	-0.8
4,780,608	+	DZA65_RS22110	0.17	+1.3
4,780,608	+	DZA65_RS22110	0.17	-1.0
4,780,608	+	DZA65_RS22110	0.17	+0.5
4,780,608	+	DZA65_RS22110	0.17	+2.0
4,780,608	+	DZA65_RS22110	0.17	-1.8
4,780,608	+	DZA65_RS22110	0.17	-0.4
4,780,608	+	DZA65_RS22110	0.17	+1.8
4,780,608	+	DZA65_RS22110	0.17	-2.0
4,780,608	+	DZA65_RS22110	0.17	-2.1
4,780,608	+	DZA65_RS22110	0.17	+0.2
4,780,608	+	DZA65_RS22110	0.17	+0.5
4,780,608	+	DZA65_RS22110	0.17	-1.4
4,780,609	-			-0.1
4,780,609	-	DZA65_RS22110	0.17	-0.2
4,780,609	-	DZA65_RS22110	0.17	-1.4
4,780,609	-	DZA65_RS22110	0.17	-1.0
4,780,609	-	DZA65_RS22110	0.17	+0.8
4,780,609	-	DZA65_RS22110	0.17	+2.1
4,780,609	-	DZA65_RS22110	0.17	+0.2
4,780,609	-	DZA65_RS22110	0.17	+0.4
4,780,609	-	DZA65_RS22110	0.17	-2.2
4,780,609	-	DZA65_RS22110	0.17	-1.7
4,780,609	-	DZA65_RS22110	0.17	+0.2
4,780,609	-	DZA65_RS22110	0.17	+0.6
4,780,609	-	DZA65_RS22110	0.17	-1.4
4,780,609	-	DZA65_RS22110	0.17	+0.5
4,780,609	-	DZA65_RS22110	0.17	+2.5
4,780,609	-	DZA65_RS22110	0.17	-0.3
4,780,609	-	DZA65_RS22110	0.17	+2.0
4,780,609	-	DZA65_RS22110	0.17	-2.1
4,780,609	-	DZA65_RS22110	0.17	+0.2
4,780,609	-	DZA65_RS22110	0.17	-0.0
4,780,609	-	DZA65_RS22110	0.17	+0.2
4,780,609	-	DZA65_RS22110	0.17	-0.8
4,780,609	-	DZA65_RS22110	0.17	-2.2
4,780,609	-	DZA65_RS22110	0.17	+1.6
4,780,609	-	DZA65_RS22110	0.17	-1.6
4,780,609	-	DZA65_RS22110	0.17	+0.6
4,780,609	-	DZA65_RS22110	0.17	+1.8
4,780,609	-	DZA65_RS22110	0.17	+0.8
4,780,609	-	DZA65_RS22110	0.17	-0.4
4,780,609	-	DZA65_RS22110	0.17	+0.2
4,780,609	-	DZA65_RS22110	0.17	-3.1
4,780,609	-	DZA65_RS22110	0.17	-0.6
4,780,609	-	DZA65_RS22110	0.17	+1.2
4,780,609	-	DZA65_RS22110	0.17	-0.2
4,780,609	-	DZA65_RS22110	0.17	+0.6
4,780,609	-	DZA65_RS22110	0.17	+0.3
4,780,609	-	DZA65_RS22110	0.17	+1.4
4,780,609	-	DZA65_RS22110	0.17	-2.5
4,780,609	-	DZA65_RS22110	0.17	-0.8
4,780,609	-	DZA65_RS22110	0.17	-1.1
4,780,632	+	DZA65_RS22110	0.21	+1.8
4,780,632	+	DZA65_RS22110	0.21	+1.5
4,780,633	-	DZA65_RS22110	0.21	+1.2
4,780,633	-	DZA65_RS22110	0.21	-0.4
4,780,635	+	DZA65_RS22110	0.21	+1.1
4,780,636	-	DZA65_RS22110	0.21	+0.8
4,780,636	-	DZA65_RS22110	0.21	+3.9
4,780,647	+	DZA65_RS22110	0.23	+0.4
4,780,647	+	DZA65_RS22110	0.23	+0.6
4,780,647	+	DZA65_RS22110	0.23	-0.2
4,780,648	-	DZA65_RS22110	0.23	-0.4
4,780,648	-	DZA65_RS22110	0.23	-0.4
4,780,648	-	DZA65_RS22110	0.23	+0.8
4,780,648	-	DZA65_RS22110	0.23	-2.2
4,780,648	-	DZA65_RS22110	0.23	+0.2
4,780,648	-	DZA65_RS22110	0.23	-0.4
4,780,649	+	DZA65_RS22110	0.23	-0.0
4,780,649	+	DZA65_RS22110	0.23	+0.3
4,780,649	+	DZA65_RS22110	0.23	+0.1
4,780,649	+	DZA65_RS22110	0.23	+0.4
4,780,649	+	DZA65_RS22110	0.23	+1.2
4,780,650	-	DZA65_RS22110	0.23	+0.5
4,780,725	+	DZA65_RS22110	0.35	-1.7
4,780,725	+	DZA65_RS22110	0.35	+0.3
4,780,725	+	DZA65_RS22110	0.35	-1.4
4,780,725	+	DZA65_RS22110	0.35	+0.1
4,780,725	+	DZA65_RS22110	0.35	-0.8
4,780,725	+	DZA65_RS22110	0.35	+0.5
4,780,725	+	DZA65_RS22110	0.35	-1.2
4,780,725	+	DZA65_RS22110	0.35	-2.2
4,780,725	+	DZA65_RS22110	0.35	+0.2
4,780,725	+	DZA65_RS22110	0.35	-1.1
4,780,726	-	DZA65_RS22110	0.35	-0.2
4,780,726	-	DZA65_RS22110	0.35	+0.2
4,780,740	+	DZA65_RS22110	0.37	+0.2
4,780,845	+	DZA65_RS22110	0.54	+1.1
4,780,845	+	DZA65_RS22110	0.54	+0.2
4,780,845	+	DZA65_RS22110	0.54	+2.2
4,780,846	-	DZA65_RS22110	0.54	-1.1
4,780,846	-	DZA65_RS22110	0.54	+0.3
4,780,846	-	DZA65_RS22110	0.54	-2.7
4,780,846	-	DZA65_RS22110	0.54	+0.7
4,780,851	+	DZA65_RS22110	0.55	-0.5
4,780,851	+	DZA65_RS22110	0.55	-1.2
4,780,851	+	DZA65_RS22110	0.55	-1.6
4,780,851	+	DZA65_RS22110	0.55	+1.2
4,780,852	-	DZA65_RS22110	0.55	-1.1
4,780,852	-	DZA65_RS22110	0.55	+1.2
4,780,852	-	DZA65_RS22110	0.55	-1.6
4,780,852	-	DZA65_RS22110	0.55	-0.9
4,780,852	-	DZA65_RS22110	0.55	-0.5
4,780,852	-	DZA65_RS22110	0.55	+1.2
4,780,852	-	DZA65_RS22110	0.55	-0.4
4,780,852	-	DZA65_RS22110	0.55	+1.5
4,780,852	-	DZA65_RS22110	0.55	-0.6
4,780,897	+	DZA65_RS22110	0.62	-2.2
4,780,897	+	DZA65_RS22110	0.62	-1.0
4,780,897	+	DZA65_RS22110	0.62	-0.2
4,780,897	+	DZA65_RS22110	0.62	-1.9
4,780,897	+	DZA65_RS22110	0.62	+2.0
4,780,898	-	DZA65_RS22110	0.62	-0.8
4,780,898	-	DZA65_RS22110	0.62	-1.6
4,780,898	-	DZA65_RS22110	0.62	-0.4
4,780,898	-	DZA65_RS22110	0.62	-1.1
4,780,904	-	DZA65_RS22110	0.63	+1.8
4,780,904	-	DZA65_RS22110	0.63	-2.1
4,780,913	+	DZA65_RS22110	0.64	-0.3
4,780,913	+	DZA65_RS22110	0.64	-3.3
4,780,914	-	DZA65_RS22110	0.64	-2.8
4,780,914	-	DZA65_RS22110	0.64	+2.5
4,780,914	-	DZA65_RS22110	0.64	-0.8
4,780,914	-	DZA65_RS22110	0.64	+0.3
4,780,914	-	DZA65_RS22110	0.64	-0.3
4,780,925	+	DZA65_RS22110	0.66	-1.5
4,780,951	+	DZA65_RS22110	0.70	-0.4
4,780,951	+	DZA65_RS22110	0.70	+0.1
4,780,951	+	DZA65_RS22110	0.70	+1.2
4,780,951	+	DZA65_RS22110	0.70	+1.6
4,780,951	+	DZA65_RS22110	0.70	-1.8
4,780,951	+	DZA65_RS22110	0.70	-0.4
4,780,952	-	DZA65_RS22110	0.70	+0.8
4,780,952	-	DZA65_RS22110	0.70	+0.3
4,780,952	-	DZA65_RS22110	0.70	+0.4
4,780,952	-	DZA65_RS22110	0.70	+0.4
4,780,952	-			+0.6
4,781,007	-	DZA65_RS22110	0.79	-0.8
4,781,075	+	DZA65_RS22110	0.90	+1.8
4,781,076	-	DZA65_RS22110	0.90	-0.8
4,781,106	+			+2.2
4,781,106	+			-1.4
4,781,106	+			+0.7
4,781,106	+			-1.1
4,781,107	-			-1.4
4,781,107	-			+0.1
4,781,140	-			+0.1

Or see this region's nucleotide sequence