Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20270

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,395,049	+		DZA65_RS20265	0.27	-2.3
4,395,050	-		DZA65_RS20265	0.27	+0.1
4,395,050	-		DZA65_RS20265	0.27	+2.1
4,395,208	+		DZA65_RS20265	0.40	+1.1
4,395,208	+		DZA65_RS20265	0.40	-0.9
4,395,253	+		DZA65_RS20265	0.43	-0.9
4,395,254	-		DZA65_RS20265	0.43	+1.0
4,395,254	-		DZA65_RS20265	0.43	+0.1
4,395,254	-		DZA65_RS20265	0.43	-0.3
4,395,254	-		DZA65_RS20265	0.43	+2.6
4,395,254	-		DZA65_RS20265	0.43	-1.2
4,395,254	-		DZA65_RS20265	0.43	+1.1
4,395,254	-		DZA65_RS20265	0.43	+0.9
4,395,254	-		DZA65_RS20265	0.43	+0.6
4,395,405	-		DZA65_RS20265	0.55	-0.5
4,395,547	+		DZA65_RS20265	0.65	+0.7
4,395,557	-		DZA65_RS20265	0.66	+0.1
4,395,617	+		DZA65_RS20265	0.71	+1.4
4,395,617	+		DZA65_RS20265	0.71	+0.3
4,395,618	-		DZA65_RS20265	0.71	-1.4
4,395,618	-		DZA65_RS20265	0.71	+0.1
4,395,618	-		DZA65_RS20265	0.71	-0.1
4,395,618	-		DZA65_RS20265	0.71	+1.1
4,395,618	-		DZA65_RS20265	0.71	-1.2
4,395,618	-		DZA65_RS20265	0.71	+0.3
4,395,626	+		DZA65_RS20265	0.71	-0.7
4,395,626	+		DZA65_RS20265	0.71	+0.1
4,395,626	+		DZA65_RS20265	0.71	+0.0
4,395,626	+		DZA65_RS20265	0.71	-0.1
4,395,626	+		DZA65_RS20265	0.71	-1.4
4,395,627	-		DZA65_RS20265	0.72	+0.0
4,395,653	+		DZA65_RS20265	0.74	+1.6
4,395,662	-		DZA65_RS20265	0.74	-0.4
4,395,679	+		DZA65_RS20265	0.76	+1.1
4,395,679	+		DZA65_RS20265	0.76	+0.1
4,395,730	+		DZA65_RS20265	0.79	+1.9
4,395,730	+		DZA65_RS20265	0.79	-0.9
4,395,730	+		DZA65_RS20265	0.79	+0.2
4,395,730	+		DZA65_RS20265	0.79	-0.7
4,395,730	+		DZA65_RS20265	0.79	-0.4
4,395,731	-		DZA65_RS20265	0.80	+0.6
4,395,731	-		DZA65_RS20265	0.80	+0.7
4,395,731	-		DZA65_RS20265	0.80	-0.7
4,395,731	-		DZA65_RS20265	0.80	+1.3
4,395,731	-		DZA65_RS20265	0.80	-1.8
4,395,731	-		DZA65_RS20265	0.80	+2.7
4,395,731	-		DZA65_RS20265	0.80	+0.5
4,395,731	-		DZA65_RS20265	0.80	-0.7
4,395,731	-		DZA65_RS20265	0.80	-0.2
4,395,731	-		DZA65_RS20265	0.80	+1.1
4,395,731	-		DZA65_RS20265	0.80	+2.1
4,395,731	-		DZA65_RS20265	0.80	-0.9
4,395,731	-		DZA65_RS20265	0.80	+0.1
4,395,797	+		DZA65_RS20265	0.85	+0.1
4,395,798	-		DZA65_RS20265	0.85	-0.1
4,395,802	+		DZA65_RS20265	0.85	+0.0
4,395,803	-		DZA65_RS20265	0.85	+0.5
4,395,803	-		DZA65_RS20265	0.85	+0.6
4,395,803	-		DZA65_RS20265	0.85	-2.6
4,395,803	-		DZA65_RS20265	0.85	+0.6
4,395,866	+		DZA65_RS20265	0.90	-1.0
4,395,866	+		DZA65_RS20265	0.90	-1.7
4,395,866	+		DZA65_RS20265	0.90	+0.1
4,395,867	-		DZA65_RS20265	0.90	-2.9
4,395,867	-		DZA65_RS20265	0.90	-0.8
4,395,984	-				+0.1
4,395,984	-				-2.2
4,395,998	+				+2.1
4,396,023	+				-0.6
4,396,023	+				+1.5
4,396,024	-				+1.0
4,396,024	-				+0.1
4,396,031	+				+1.0
4,396,031	+				-0.4
4,396,031	+				-0.2
4,396,031	+				+0.1
4,396,031	+				-1.4
4,396,031	+				+0.1
4,396,032	-				-1.9
4,396,032	-				-1.9
4,396,032	-				+1.3
4,396,032	-				-0.1
4,396,032	-				-0.1
4,396,032	-				-1.7
4,396,032	-				-0.9
4,396,032	-				+3.3
4,396,032	-				+1.1
4,396,032	-				-1.2
4,396,032	-				+0.5
4,396,252	+		DZA65_RS20270	0.14	-2.2
4,396,252	+		DZA65_RS20270	0.14	+0.1
4,396,253	-		DZA65_RS20270	0.14	+3.3
4,396,258	+		DZA65_RS20270	0.15	-0.1
4,396,258	+		DZA65_RS20270	0.15	-1.1
4,396,259	-		DZA65_RS20270	0.15	-0.4
4,396,259	-		DZA65_RS20270	0.15	-1.4
4,396,259	-		DZA65_RS20270	0.15	-1.4
4,396,259	-		DZA65_RS20270	0.15	-0.1
4,396,259	-		DZA65_RS20270	0.15	+0.4
4,396,300	-		DZA65_RS20270	0.17	-0.9
4,396,300	-		DZA65_RS20270	0.17	+0.7
4,396,341	+		DZA65_RS20270	0.20	-2.3
4,396,341	+		DZA65_RS20270	0.20	-0.6
4,396,341	+		DZA65_RS20270	0.20	+1.7
4,396,341	+		DZA65_RS20270	0.20	-0.8
4,396,341	+		DZA65_RS20270	0.20	+1.1
4,396,341	+		DZA65_RS20270	0.20	+1.5
4,396,342	-		DZA65_RS20270	0.20	+1.1
4,396,342	-		DZA65_RS20270	0.20	+0.6
4,396,342	-		DZA65_RS20270	0.20	+0.4
4,396,342	-		DZA65_RS20270	0.20	-0.5
4,396,342	-		DZA65_RS20270	0.20	+0.1
4,396,450	+		DZA65_RS20270	0.27	-0.3
4,396,450	+		DZA65_RS20270	0.27	-2.8
4,396,450	+		DZA65_RS20270	0.27	+0.7
4,396,450	+		DZA65_RS20270	0.27	-1.2
4,396,451	-		DZA65_RS20270	0.27	+1.8
4,396,451	-		DZA65_RS20270	0.27	+1.1
4,396,451	-		DZA65_RS20270	0.27	+0.1
4,396,451	-		DZA65_RS20270	0.27	+1.1
4,396,451	-		DZA65_RS20270	0.27	+0.4
4,396,451	-		DZA65_RS20270	0.27	-0.3
4,396,692	+		DZA65_RS20270	0.42	-0.3
4,396,692	+		DZA65_RS20270	0.42	+0.1
4,396,693	-		DZA65_RS20270	0.42	-1.9
4,396,776	+		DZA65_RS20270	0.47	+0.4
4,396,777	-		DZA65_RS20270	0.47	-2.2
4,396,777	-		DZA65_RS20270	0.47	-1.7
4,396,777	-		DZA65_RS20270	0.47	+2.4
4,396,781	-		DZA65_RS20270	0.47	+0.9
4,396,932	+		DZA65_RS20270	0.57	+0.7
4,396,932	+		DZA65_RS20270	0.57	-1.9
4,396,932	+		DZA65_RS20270	0.57	+2.0
4,396,932	+		DZA65_RS20270	0.57	+1.7
4,396,932	+		DZA65_RS20270	0.57	+0.9
4,396,933	-		DZA65_RS20270	0.57	-0.9
4,396,940	+		DZA65_RS20270	0.57	-1.9
4,396,940	+		DZA65_RS20270	0.57	+1.1
4,396,940	+		DZA65_RS20270	0.57	+0.1
4,396,941	-		DZA65_RS20270	0.57	-0.8
4,396,941	-		DZA65_RS20270	0.57	+0.1
4,396,989	+		DZA65_RS20270	0.60	+0.1
4,396,990	-		DZA65_RS20270	0.61	-1.2
4,396,990	-		DZA65_RS20270	0.61	+1.1
4,396,995	+		DZA65_RS20270	0.61	-1.4
4,396,996	-		DZA65_RS20270	0.61	+2.1
4,397,028	+		DZA65_RS20270	0.63	+1.4
4,397,029	-		DZA65_RS20270	0.63	+0.7
4,397,029	-		DZA65_RS20270	0.63	-0.2
4,397,029	-		DZA65_RS20270	0.63	+1.0
4,397,029	-		DZA65_RS20270	0.63	-1.4
4,397,043	+		DZA65_RS20270	0.64	-0.1
4,397,163	+		DZA65_RS20270	0.71	-0.2
4,397,163	+		DZA65_RS20270	0.71	+1.0
4,397,163	+		DZA65_RS20270	0.71	+1.2
4,397,187	+		DZA65_RS20270	0.73	-1.9
4,397,187	+		DZA65_RS20270	0.73	-1.4
4,397,187	+		DZA65_RS20270	0.73	-1.2
4,397,187	+		DZA65_RS20270	0.73	+1.3
4,397,188	-		DZA65_RS20270	0.73	-1.2
4,397,188	-		DZA65_RS20270	0.73	+2.6
4,397,188	-		DZA65_RS20270	0.73	-0.4
4,397,188	-		DZA65_RS20270	0.73	-0.9
4,397,191	+		DZA65_RS20270	0.73	+0.3
4,397,191	+		DZA65_RS20270	0.73	+0.1
4,397,191	+		DZA65_RS20270	0.73	+1.3
4,397,191	+		DZA65_RS20270	0.73	-0.9
4,397,192	-		DZA65_RS20270	0.73	-0.5
4,397,192	-		DZA65_RS20270	0.73	+0.2
4,397,192	-		DZA65_RS20270	0.73	-1.8
4,397,192	-		DZA65_RS20270	0.73	+0.8
4,397,192	-		DZA65_RS20270	0.73	+0.1
4,397,251	+		DZA65_RS20270	0.77	-0.4
4,397,312	-		DZA65_RS20270	0.81	+0.2
4,397,483	+				-0.4
4,397,491	+				+0.1
4,397,581	+				-1.2
4,397,581	+				+0.1
4,397,581	+				+0.3
4,397,582	-				+0.7
4,397,582	-				-0.9
4,397,582	-				+0.1
4,397,632	+				+1.1
4,397,632	+				-2.2
4,397,704	+				-0.4
4,397,704	+				-1.5
4,397,866	-				+0.3
4,397,866	-				-2.0
4,397,866	-				+1.1
4,397,911	+				+1.7
4,397,944	+				+0.5
4,397,944	+				+0.1
4,398,019	+		DZA65_RS20275	0.10	-0.4
4,398,052	+		DZA65_RS20275	0.14	-1.8
4,398,052	+		DZA65_RS20275	0.14	-0.7
4,398,066	+		DZA65_RS20275	0.15	-3.6
4,398,067	-		DZA65_RS20275	0.15	+1.1
4,398,067	-		DZA65_RS20275	0.15	+0.6
4,398,067	-		DZA65_RS20275	0.15	-0.9
4,398,067	-				-0.2
4,398,114	+		DZA65_RS20275	0.20	-0.2
4,398,114	+		DZA65_RS20275	0.20	+1.1
4,398,114	+		DZA65_RS20275	0.20	+0.1
4,398,115	-		DZA65_RS20275	0.21	-0.0
4,398,141	+		DZA65_RS20275	0.23	-1.9
4,398,141	+		DZA65_RS20275	0.23	-0.4
4,398,142	-		DZA65_RS20275	0.23	-0.4
4,398,142	-		DZA65_RS20275	0.23	+0.7
4,398,195	+		DZA65_RS20275	0.29	-1.6
4,398,195	+		DZA65_RS20275	0.29	-2.5
4,398,196	-		DZA65_RS20275	0.29	-0.4
4,398,196	-		DZA65_RS20275	0.29	+1.1
4,398,227	-		DZA65_RS20275	0.33	-1.2
4,398,340	+		DZA65_RS20275	0.45	-2.4
4,398,340	+		DZA65_RS20275	0.45	-1.2
4,398,340	+		DZA65_RS20275	0.45	-1.9
4,398,340	+		DZA65_RS20275	0.45	-1.4
4,398,340	+		DZA65_RS20275	0.45	-1.6
4,398,340	+		DZA65_RS20275	0.45	+0.1
4,398,340	+		DZA65_RS20275	0.45	+0.6
4,398,340	+		DZA65_RS20275	0.45	-2.0
4,398,340	+		DZA65_RS20275	0.45	-2.4
4,398,340	+		DZA65_RS20275	0.45	-0.9
4,398,340	+		DZA65_RS20275	0.45	-0.2
4,398,340	+		DZA65_RS20275	0.45	-1.7
4,398,340	+		DZA65_RS20275	0.45	-0.9
4,398,341	-		DZA65_RS20275	0.45	-2.3
4,398,341	-		DZA65_RS20275	0.45	+0.4
4,398,341	-		DZA65_RS20275	0.45	-1.4
4,398,341	-		DZA65_RS20275	0.45	-3.1
4,398,341	-		DZA65_RS20275	0.45	-1.7
4,398,341	-		DZA65_RS20275	0.45	-0.9
4,398,341	-		DZA65_RS20275	0.45	-1.8
4,398,341	-		DZA65_RS20275	0.45	+0.3
4,398,341	-		DZA65_RS20275	0.45	-1.4
4,398,341	-		DZA65_RS20275	0.45	+0.1
4,398,351	+		DZA65_RS20275	0.46	+1.1
4,398,351	+		DZA65_RS20275	0.46	-2.2
4,398,351	+		DZA65_RS20275	0.46	-0.5
4,398,352	-		DZA65_RS20275	0.46	-0.8
4,398,352	-		DZA65_RS20275	0.46	-0.9
4,398,352	-		DZA65_RS20275	0.46	-2.6
4,398,352	-		DZA65_RS20275	0.46	-0.7
4,398,396	+		DZA65_RS20275	0.51	-1.2
4,398,396	+		DZA65_RS20275	0.51	-2.2
4,398,396	+		DZA65_RS20275	0.51	-0.7
4,398,396	+		DZA65_RS20275	0.51	-1.4
4,398,396	+		DZA65_RS20275	0.51	+1.6
4,398,442	+		DZA65_RS20275	0.56	-2.2
4,398,442	+		DZA65_RS20275	0.56	+0.1
4,398,442	+		DZA65_RS20275	0.56	-0.9
4,398,442	+		DZA65_RS20275	0.56	-1.9
4,398,443	-		DZA65_RS20275	0.56	-2.7
4,398,443	-		DZA65_RS20275	0.56	-0.4
4,398,443	-		DZA65_RS20275	0.56	-1.6
4,398,443	-		DZA65_RS20275	0.56	-3.7
4,398,443	-		DZA65_RS20275	0.56	-0.6
4,398,443	-		DZA65_RS20275	0.56	-1.9
4,398,469	+		DZA65_RS20275	0.59	-1.9
4,398,470	-		DZA65_RS20275	0.59	-0.3
4,398,495	+		DZA65_RS20275	0.61	-0.3
4,398,496	-		DZA65_RS20275	0.62	-0.4
4,398,588	+		DZA65_RS20275	0.71	-0.6
4,398,588	+		DZA65_RS20275	0.71	-1.4
4,398,589	-		DZA65_RS20275	0.72	-0.4
4,398,589	-		DZA65_RS20275	0.72	-1.1