Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16165

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,501,336	+		DZA65_RS16160	0.22	+1.3
3,501,336	+		DZA65_RS16160	0.22	+1.8
3,501,336	+		DZA65_RS16160	0.22	-1.0
3,501,336	+		DZA65_RS16160	0.22	+0.4
3,501,337	-		DZA65_RS16160	0.22	+0.1
3,501,337	-		DZA65_RS16160	0.22	-2.0
3,501,340	+		DZA65_RS16160	0.22	-0.4
3,501,340	+		DZA65_RS16160	0.22	+1.8
3,501,340	+		DZA65_RS16160	0.22	+0.7
3,501,341	-		DZA65_RS16160	0.22	-1.0
3,501,341	-		DZA65_RS16160	0.22	+1.0
3,501,341	-		DZA65_RS16160	0.22	-3.0
3,501,341	-		DZA65_RS16160	0.22	-1.0
3,501,341	-		DZA65_RS16160	0.22	-1.7
3,501,341	-		DZA65_RS16160	0.22	-1.0
3,501,341	-		DZA65_RS16160	0.22	-1.9
3,501,438	+		DZA65_RS16160	0.30	-0.0
3,501,438	+		DZA65_RS16160	0.30	-0.9
3,501,438	+		DZA65_RS16160	0.30	-2.0
3,501,439	-		DZA65_RS16160	0.30	-0.3
3,501,590	+		DZA65_RS16160	0.42	+1.0
3,501,590	+		DZA65_RS16160	0.42	-1.4
3,501,591	-		DZA65_RS16160	0.42	-0.4
3,501,591	-		DZA65_RS16160	0.42	+0.7
3,501,639	+		DZA65_RS16160	0.46	-0.4
3,501,639	+		DZA65_RS16160	0.46	-2.6
3,501,640	-		DZA65_RS16160	0.46	+1.0
3,501,640	-		DZA65_RS16160	0.46	+2.3
3,501,640	-		DZA65_RS16160	0.46	+0.8
3,501,650	+		DZA65_RS16160	0.47	+2.5
3,501,713	+		DZA65_RS16160	0.52	-0.8
3,501,713	+		DZA65_RS16160	0.52	+1.5
3,501,713	+		DZA65_RS16160	0.52	-0.6
3,501,713	+		DZA65_RS16160	0.52	+1.1
3,501,713	+		DZA65_RS16160	0.52	+1.0
3,501,714	-		DZA65_RS16160	0.52	+0.5
3,501,714	-		DZA65_RS16160	0.52	+0.1
3,501,714	-		DZA65_RS16160	0.52	+0.4
3,501,714	-		DZA65_RS16160	0.52	+0.6
3,501,714	-		DZA65_RS16160	0.52	-2.6
3,501,714	-		DZA65_RS16160	0.52	+0.3
3,501,714	-		DZA65_RS16160	0.52	+0.1
3,501,730	+		DZA65_RS16160	0.54	-0.4
3,502,080	+		DZA65_RS16160	0.82	-1.6
3,502,288	+				-1.4
3,502,288	+				+1.5
3,502,288	+				-0.0
3,502,288	+				+0.5
3,502,289	-				-1.6
3,502,289	-				+0.4
3,502,289	-				+0.5
3,502,289	-				-0.7
3,502,368	+				+0.9
3,502,368	+				-0.7
3,502,369	-				-1.6
3,502,369	-				-1.0
3,502,491	+				+0.5
3,502,492	-				+0.3
3,502,492	-				+1.0
3,502,492	-				+2.7
3,502,492	-				-2.0
3,502,492	-				-0.4
3,502,492	-				-0.2
3,502,732	+		DZA65_RS16165	0.14	-0.9
3,502,732	+		DZA65_RS16165	0.14	-1.2
3,502,732	+		DZA65_RS16165	0.14	-1.0
3,502,732	+		DZA65_RS16165	0.14	-1.0
3,502,732	+		DZA65_RS16165	0.14	+1.0
3,502,733	-		DZA65_RS16165	0.14	-1.5
3,502,733	-		DZA65_RS16165	0.14	-0.5
3,502,733	-		DZA65_RS16165	0.14	-2.7
3,502,733	-		DZA65_RS16165	0.14	+0.8
3,502,733	-		DZA65_RS16165	0.14	-0.0
3,502,733	-		DZA65_RS16165	0.14	-0.0
3,502,733	-		DZA65_RS16165	0.14	-1.4
3,502,733	-		DZA65_RS16165	0.14	-2.0
3,502,733	-		DZA65_RS16165	0.14	-1.0
3,502,733	-		DZA65_RS16165	0.14	+2.9
3,502,936	+		DZA65_RS16165	0.20	-2.0
3,503,395	+		DZA65_RS16165	0.35	-1.6
3,503,395	+		DZA65_RS16165	0.35	-2.0
3,503,395	+		DZA65_RS16165	0.35	-0.8
3,503,395	+		DZA65_RS16165	0.35	-0.8
3,503,395	+		DZA65_RS16165	0.35	-2.2
3,503,395	+		DZA65_RS16165	0.35	+0.2
3,503,395	+		DZA65_RS16165	0.35	-1.7
3,503,395	+		DZA65_RS16165	0.35	+1.4
3,503,396	-		DZA65_RS16165	0.35	-1.0
3,503,396	-		DZA65_RS16165	0.35	+1.5
3,503,396	-		DZA65_RS16165	0.35	+0.4
3,503,396	-		DZA65_RS16165	0.35	-0.6
3,503,396	-		DZA65_RS16165	0.35	-0.8
3,503,396	-		DZA65_RS16165	0.35	+0.6
3,503,463	+		DZA65_RS16165	0.37	-0.0
3,503,463	+		DZA65_RS16165	0.37	-1.1
3,503,464	-				-2.4
3,503,464	-		DZA65_RS16165	0.37	+1.0
3,503,479	+		DZA65_RS16165	0.37	-1.5
3,503,479	+		DZA65_RS16165	0.37	+0.3
3,503,585	-		DZA65_RS16165	0.41	-0.0
3,503,646	+		DZA65_RS16165	0.43	-0.6
3,503,647	-		DZA65_RS16165	0.43	-0.6
3,503,653	-		DZA65_RS16165	0.43	-0.1
3,503,653	-		DZA65_RS16165	0.43	-0.5
3,503,763	+		DZA65_RS16165	0.46	-1.0
3,503,763	+		DZA65_RS16165	0.46	+4.3
3,503,764	-		DZA65_RS16165	0.46	-1.9
3,503,764	-		DZA65_RS16165	0.46	-1.9
3,503,764	-		DZA65_RS16165	0.46	+1.1
3,503,764	-		DZA65_RS16165	0.46	+1.0
3,503,892	-		DZA65_RS16165	0.51	-0.6
3,503,892	-		DZA65_RS16165	0.51	-0.0
3,503,894	-		DZA65_RS16165	0.51	-1.5
3,503,894	-		DZA65_RS16165	0.51	-1.5
3,503,980	+		DZA65_RS16165	0.53	+1.8
3,503,980	+		DZA65_RS16165	0.53	-0.5
3,503,981	-		DZA65_RS16165	0.53	+1.0
3,503,981	-		DZA65_RS16165	0.53	+1.0
3,503,982	+		DZA65_RS16165	0.53	-1.0
3,504,105	+		DZA65_RS16165	0.57	+0.3
3,504,105	+		DZA65_RS16165	0.57	+1.2
3,504,105	+		DZA65_RS16165	0.57	+0.5
3,504,105	+		DZA65_RS16165	0.57	-0.2
3,504,106	-		DZA65_RS16165	0.57	-0.6
3,504,134	+		DZA65_RS16165	0.58	+0.6
3,504,135	-		DZA65_RS16165	0.58	+2.5
3,504,135	-		DZA65_RS16165	0.58	+1.2
3,504,135	-		DZA65_RS16165	0.58	-0.0
3,504,228	+		DZA65_RS16165	0.61	-0.6
3,504,228	+		DZA65_RS16165	0.61	+0.5
3,504,229	-		DZA65_RS16165	0.61	+1.6
3,504,289	+		DZA65_RS16165	0.63	-2.0
3,504,289	+		DZA65_RS16165	0.63	+1.5
3,504,290	-		DZA65_RS16165	0.63	+0.2
3,504,290	-		DZA65_RS16165	0.63	+0.8
3,504,343	+		DZA65_RS16165	0.65	-0.5
3,504,344	-		DZA65_RS16165	0.65	-2.0
3,504,344	-		DZA65_RS16165	0.65	-2.0
3,504,413	+		DZA65_RS16165	0.67	-1.0
3,504,475	+		DZA65_RS16165	0.69	-1.7
3,504,475	+		DZA65_RS16165	0.69	-1.4
3,504,476	-		DZA65_RS16165	0.69	-1.9
3,504,476	-		DZA65_RS16165	0.69	+1.2
3,504,476	-		DZA65_RS16165	0.69	-0.6
3,504,530	+				-2.4
3,504,531	-		DZA65_RS16165	0.71	+0.4
3,504,531	-		DZA65_RS16165	0.71	+2.0
3,504,544	+		DZA65_RS16165	0.71	-2.2
3,504,544	+				-0.3
3,504,544	+		DZA65_RS16165	0.71	+1.4
3,504,544	+		DZA65_RS16165	0.71	-1.0
3,504,544	+				-0.0
3,504,545	-		DZA65_RS16165	0.71	-1.0
3,504,545	-		DZA65_RS16165	0.71	+2.1
3,504,580	+		DZA65_RS16165	0.72	+2.0
3,504,580	+		DZA65_RS16165	0.72	+0.4
3,504,581	-		DZA65_RS16165	0.72	-0.0
3,504,581	-		DZA65_RS16165	0.72	-0.5
3,504,581	-		DZA65_RS16165	0.72	+0.5
3,504,581	-		DZA65_RS16165	0.72	+0.4
3,504,666	+		DZA65_RS16165	0.75	+1.0
3,504,666	+				+0.4
3,504,667	-		DZA65_RS16165	0.75	+1.8
3,504,667	-		DZA65_RS16165	0.75	-0.2
3,504,786	-		DZA65_RS16165	0.79	-1.8
3,504,786	-		DZA65_RS16165	0.79	-0.8
3,504,786	-		DZA65_RS16165	0.79	-0.6
3,504,861	+		DZA65_RS16165	0.81	+0.1
3,504,886	-		DZA65_RS16165	0.82	+0.8
3,504,886	-		DZA65_RS16165	0.82	-0.4
3,504,886	-		DZA65_RS16165	0.82	-0.7
3,504,886	-		DZA65_RS16165	0.82	+1.0
3,504,941	+		DZA65_RS16165	0.84	+0.7
3,504,941	+		DZA65_RS16165	0.84	-1.4
3,504,952	+				+0.5
3,504,952	+		DZA65_RS16165	0.84	-1.0
3,504,952	+		DZA65_RS16165	0.84	-1.4
3,504,952	+		DZA65_RS16165	0.84	+0.6
3,504,952	+		DZA65_RS16165	0.84	-1.9
3,504,952	+		DZA65_RS16165	0.84	+0.8
3,504,952	+		DZA65_RS16165	0.84	+0.8
3,504,952	+		DZA65_RS16165	0.84	-1.0
3,504,952	+		DZA65_RS16165	0.84	-1.6
3,504,953	-				-2.4
3,504,953	-		DZA65_RS16165	0.84	-1.1
3,504,953	-		DZA65_RS16165	0.84	-1.4
3,504,953	-		DZA65_RS16165	0.84	-1.0
3,504,973	+		DZA65_RS16165	0.85	-0.0
3,504,974	-		DZA65_RS16165	0.85	+2.2
3,504,974	-		DZA65_RS16165	0.85	+0.2
3,504,974	-		DZA65_RS16165	0.85	+0.6
3,504,985	-		DZA65_RS16165	0.85	-1.0
3,505,192	+				-0.4
3,505,192	+				-0.6
3,505,193	-				+0.5
3,505,193	-				-1.5
3,505,193	-				-0.4
3,505,318	-				+1.1
3,505,318	-				-1.6
3,505,359	+				+1.0
3,505,360	-				+1.8
3,505,375	+				+1.0
3,505,376	-				-0.3
3,505,376	-				+1.2
3,505,460	+				-0.3
3,505,460	+				+1.0
3,505,564	-				+0.8
3,505,762	+		DZA65_RS16170	0.10	+1.0
3,505,763	-		DZA65_RS16170	0.10	-2.5
3,505,763	-		DZA65_RS16170	0.10	-3.4
3,505,763	-		DZA65_RS16170	0.10	-0.8
3,505,763	-		DZA65_RS16170	0.10	+1.0
3,505,822	-		DZA65_RS16170	0.12	-1.0
3,505,861	+		DZA65_RS16170	0.14	-2.0
3,505,884	+				-1.6
3,505,900	+		DZA65_RS16170	0.15	-1.1
3,505,900	+		DZA65_RS16170	0.15	-2.6
3,505,900	+		DZA65_RS16170	0.15	-1.4
3,505,901	-		DZA65_RS16170	0.15	+0.8
3,505,902	+		DZA65_RS16170	0.15	-0.6
3,505,902	+		DZA65_RS16170	0.15	-0.8
3,505,902	+		DZA65_RS16170	0.15	+3.1
3,505,902	+		DZA65_RS16170	0.15	-0.6
3,505,903	-		DZA65_RS16170	0.15	-0.6
3,505,903	-		DZA65_RS16170	0.15	-1.4
3,505,903	-		DZA65_RS16170	0.15	+1.4
3,505,903	-		DZA65_RS16170	0.15	-1.0
3,505,903	-		DZA65_RS16170	0.15	+1.0
3,505,903	-		DZA65_RS16170	0.15	-1.4
3,505,909	-		DZA65_RS16170	0.15	-0.6
3,506,098	+		DZA65_RS16170	0.21	-2.2
3,506,181	+		DZA65_RS16170	0.24	-0.5
3,506,181	+		DZA65_RS16170	0.24	-2.2
3,506,181	+				+1.3
3,506,182	-		DZA65_RS16170	0.24	-1.6
3,506,316	-		DZA65_RS16170	0.28	-0.0