Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15400

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,337,015	+		DZA65_RS15395	0.13	-1.9
3,337,016	-		DZA65_RS15395	0.13	-0.7
3,337,022	+		DZA65_RS15395	0.14	+0.3
3,337,023	-		DZA65_RS15395	0.14	+2.9
3,337,023	-		DZA65_RS15395	0.14	-0.1
3,337,036	+		DZA65_RS15395	0.15	-0.7
3,337,036	+		DZA65_RS15395	0.15	-0.7
3,337,037	-		DZA65_RS15395	0.15	-1.7
3,337,037	-		DZA65_RS15395	0.15	+0.9
3,337,083	+		DZA65_RS15395	0.20	-0.1
3,337,083	+		DZA65_RS15395	0.20	-2.1
3,337,083	+		DZA65_RS15395	0.20	-0.2
3,337,083	+		DZA65_RS15395	0.20	+0.4
3,337,083	+		DZA65_RS15395	0.20	+0.7
3,337,083	+		DZA65_RS15395	0.20	+0.4
3,337,083	+		DZA65_RS15395	0.20	+1.2
3,337,083	+		DZA65_RS15395	0.20	-1.1
3,337,083	+		DZA65_RS15395	0.20	-0.5
3,337,083	+		DZA65_RS15395	0.20	-0.3
3,337,083	+		DZA65_RS15395	0.20	-1.9
3,337,083	+		DZA65_RS15395	0.20	-2.9
3,337,083	+		DZA65_RS15395	0.20	-1.7
3,337,083	+		DZA65_RS15395	0.20	+0.9
3,337,083	+		DZA65_RS15395	0.20	-0.1
3,337,083	+		DZA65_RS15395	0.20	-1.6
3,337,083	+		DZA65_RS15395	0.20	-1.3
3,337,083	+		DZA65_RS15395	0.20	+3.1
3,337,084	-		DZA65_RS15395	0.20	-1.1
3,337,084	-		DZA65_RS15395	0.20	+0.8
3,337,084	-		DZA65_RS15395	0.20	-1.4
3,337,084	-		DZA65_RS15395	0.20	+1.6
3,337,084	-		DZA65_RS15395	0.20	+0.3
3,337,084	-		DZA65_RS15395	0.20	-1.6
3,337,084	-		DZA65_RS15395	0.20	-0.1
3,337,084	-		DZA65_RS15395	0.20	+1.6
3,337,084	-		DZA65_RS15395	0.20	-0.4
3,337,084	-		DZA65_RS15395	0.20	-0.1
3,337,113	+		DZA65_RS15395	0.23	+1.6
3,337,113	+		DZA65_RS15395	0.23	-1.1
3,337,113	+		DZA65_RS15395	0.23	-1.5
3,337,113	+		DZA65_RS15395	0.23	-0.7
3,337,114	-		DZA65_RS15395	0.23	+1.5
3,337,114	-		DZA65_RS15395	0.23	-1.5
3,337,114	-		DZA65_RS15395	0.23	+1.2
3,337,437	+		DZA65_RS15395	0.56	+0.8
3,337,438	-		DZA65_RS15395	0.56	-0.7
3,337,438	-		DZA65_RS15395	0.56	-0.3
3,337,492	+		DZA65_RS15395	0.62	+0.9
3,337,492	+		DZA65_RS15395	0.62	-1.9
3,337,493	-		DZA65_RS15395	0.62	-0.7
3,337,493	-		DZA65_RS15395	0.62	+2.2
3,337,493	-		DZA65_RS15395	0.62	-2.3
3,337,511	+		DZA65_RS15395	0.64	-0.1
3,337,613	+		DZA65_RS15395	0.74	+0.2
3,337,613	+		DZA65_RS15395	0.74	-1.9
3,337,613	+		DZA65_RS15395	0.74	+1.3
3,337,614	-		DZA65_RS15395	0.74	-1.9
3,337,614	-		DZA65_RS15395	0.74	-0.9
3,337,626	+				-2.6
3,337,659	+		DZA65_RS15395	0.79	-1.2
3,337,660	-		DZA65_RS15395	0.79	-1.7
3,337,660	-		DZA65_RS15395	0.79	-0.5
3,337,689	+		DZA65_RS15395	0.82	-0.1
3,337,689	+		DZA65_RS15395	0.82	-2.1
3,337,690	-		DZA65_RS15395	0.82	+0.4
3,337,712	+		DZA65_RS15395	0.84	+1.5
3,337,713	-		DZA65_RS15395	0.84	+1.9
3,337,713	-		DZA65_RS15395	0.84	-1.3
3,337,803	+				-0.6
3,337,803	+				-0.4
3,337,803	+				+0.3
3,337,803	+				+0.7
3,337,803	+				-2.2
3,337,803	+				+1.8
3,337,803	+				-1.1
3,337,804	-				-1.9
3,337,804	-				-0.5
3,337,804	-				-2.4
3,337,804	-				-1.8
3,337,804	-				-3.3
3,337,804	-				-1.9
3,337,804	-				-1.0
3,337,804	-				-1.1
3,337,804	-				-0.7
3,337,804	-				+1.3
3,337,828	-				-0.1
3,337,828	-				-0.4
3,337,860	-				-0.7
3,337,961	+		DZA65_RS15400	0.19	-2.4
3,337,961	+		DZA65_RS15400	0.19	-0.9
3,337,961	+		DZA65_RS15400	0.19	-0.4
3,337,961	+		DZA65_RS15400	0.19	+0.6
3,337,962	-		DZA65_RS15400	0.19	-0.7
3,337,962	-		DZA65_RS15400	0.19	-0.6
3,337,962	-		DZA65_RS15400	0.19	-0.7
3,337,962	-		DZA65_RS15400	0.19	-0.1
3,337,962	-		DZA65_RS15400	0.19	+0.9
3,337,967	+		DZA65_RS15400	0.20	+0.9
3,337,967	+		DZA65_RS15400	0.20	-2.8
3,337,967	+		DZA65_RS15400	0.20	-0.5
3,337,967	+		DZA65_RS15400	0.20	-2.3
3,337,967	+		DZA65_RS15400	0.20	+0.9
3,337,968	-		DZA65_RS15400	0.21	+0.2
3,337,968	-				-0.4
3,338,005	-		DZA65_RS15400	0.29	-1.2
3,338,094	+		DZA65_RS15400	0.50	-1.1
3,338,094	+		DZA65_RS15400	0.50	+1.1
3,338,095	-		DZA65_RS15400	0.50	+0.9
3,338,095	-		DZA65_RS15400	0.50	-2.1
3,338,123	+		DZA65_RS15400	0.57	+1.1
3,338,124	-		DZA65_RS15400	0.57	-1.4
3,338,124	-		DZA65_RS15400	0.57	+1.8
3,338,124	-		DZA65_RS15400	0.57	-0.7
3,338,188	+		DZA65_RS15400	0.72	-1.1
3,338,188	+		DZA65_RS15400	0.72	-0.7
3,338,188	+		DZA65_RS15400	0.72	-1.1
3,338,189	-		DZA65_RS15400	0.72	-1.4
3,338,189	-		DZA65_RS15400	0.72	+0.4
3,338,244	+		DZA65_RS15400	0.85	+0.3
3,338,245	-		DZA65_RS15400	0.85	-0.0
3,338,255	+		DZA65_RS15400	0.87	-1.1
3,338,256	-		DZA65_RS15400	0.88	-1.4
3,338,307	-				+2.1
3,338,317	+				+3.1
3,338,317	+				-1.2
3,338,318	-				+0.3
3,338,318	-				-2.1
3,338,318	-				-1.1
3,338,329	+				-0.3
3,338,531	+		DZA65_RS15405	0.14	+0.7
3,338,531	+		DZA65_RS15405	0.14	+0.5
3,338,662	+		DZA65_RS15405	0.22	+1.5
3,338,662	+		DZA65_RS15405	0.22	+0.3
3,338,662	+		DZA65_RS15405	0.22	-0.4
3,338,662	+		DZA65_RS15405	0.22	-2.1
3,338,663	-				-2.1
3,338,768	+		DZA65_RS15405	0.29	+1.6
3,338,768	+		DZA65_RS15405	0.29	+2.5
3,338,769	-		DZA65_RS15405	0.29	+0.0
3,339,048	+		DZA65_RS15405	0.48	+1.3
3,339,048	+				-1.1
3,339,048	+		DZA65_RS15405	0.48	-0.4
3,339,049	-		DZA65_RS15405	0.48	-1.1
3,339,049	-		DZA65_RS15405	0.48	+1.0
3,339,049	-		DZA65_RS15405	0.48	+0.0
3,339,069	+		DZA65_RS15405	0.49	+0.7
3,339,069	+		DZA65_RS15405	0.49	+0.3
3,339,069	+		DZA65_RS15405	0.49	-0.6
3,339,069	+		DZA65_RS15405	0.49	+2.1
3,339,069	+		DZA65_RS15405	0.49	+0.3
3,339,069	+		DZA65_RS15405	0.49	-0.9
3,339,070	-		DZA65_RS15405	0.49	+0.2
3,339,070	-		DZA65_RS15405	0.49	-0.3
3,339,070	-		DZA65_RS15405	0.49	-0.2
3,339,070	-		DZA65_RS15405	0.49	+0.1
3,339,070	-		DZA65_RS15405	0.49	+2.1
3,339,070	-		DZA65_RS15405	0.49	+1.5
3,339,070	-		DZA65_RS15405	0.49	-0.6
3,339,070	-		DZA65_RS15405	0.49	+0.1
3,339,070	-		DZA65_RS15405	0.49	+0.5
3,339,070	-		DZA65_RS15405	0.49	-1.1
3,339,070	-		DZA65_RS15405	0.49	+0.5
3,339,070	-		DZA65_RS15405	0.49	-0.8
3,339,250	+		DZA65_RS15405	0.61	+1.7
3,339,251	-		DZA65_RS15405	0.61	+1.3
3,339,274	+		DZA65_RS15405	0.63	+0.5