Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12600

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,697,238	+				-1.1
2,697,238	+				-0.8
2,697,238	+				-0.5
2,697,238	+				-0.8
2,697,238	+				-0.3
2,697,238	+				-1.0
2,697,238	+				+0.7
2,697,238	+				-0.6
2,697,238	+				+1.6
2,697,238	+				+2.3
2,697,238	+				-1.5
2,697,238	+				+1.1
2,697,238	+				+0.2
2,697,238	+				-1.1
2,697,239	-				-0.6
2,697,239	-				+0.5
2,697,239	-				+0.2
2,697,239	-				-0.3
2,697,239	-				+0.5
2,697,239	-				-0.3
2,697,239	-				+0.1
2,697,239	-				+1.4
2,697,239	-				-2.3
2,697,239	-				+0.3
2,697,239	-				+2.1
2,697,239	-				-2.6
2,697,239	-				+0.9
2,697,239	-				-0.3
2,697,239	-				-0.5
2,697,239	-				+1.7
2,697,239	-				+1.5
2,697,239	-				-1.6
2,697,239	-				+0.2
2,697,239	-				-0.8
2,697,242	+				-0.5
2,697,242	+				-0.3
2,697,242	+				+1.1
2,697,242	+				+2.8
2,697,242	+				-0.3
2,697,242	+				+0.5
2,697,242	+				-0.8
2,697,242	+				+1.7
2,697,242	+				-0.1
2,697,242	+				+1.3
2,697,243	-				-1.8
2,697,243	-				-0.3
2,697,243	-				+0.0
2,697,243	-				-2.3
2,697,243	-				-0.0
2,697,243	-				+0.7
2,697,248	+				-0.7
2,697,248	+				-0.6
2,697,249	-				+0.4
2,697,249	-				-0.3
2,697,249	-				-1.3
2,697,249	-				-0.6
2,697,249	-				+0.5
2,697,435	+		DZA65_RS12590	0.33	+0.6
2,697,436	-		DZA65_RS12590	0.33	-1.8
2,697,447	+		DZA65_RS12590	0.35	+0.9
2,697,447	+		DZA65_RS12590	0.35	+0.7
2,697,447	+		DZA65_RS12590	0.35	-0.3
2,697,448	-		DZA65_RS12590	0.35	-0.7
2,697,464	-				+0.1
2,697,464	-		DZA65_RS12590	0.37	+2.3
2,697,484	+		DZA65_RS12590	0.40	-0.8
2,697,488	+		DZA65_RS12590	0.41	-1.3
2,697,489	-		DZA65_RS12590	0.41	-0.3
2,697,489	-				-0.4
2,697,489	-		DZA65_RS12590	0.41	+0.3
2,697,489	-		DZA65_RS12590	0.41	+0.2
2,697,567	-		DZA65_RS12590	0.53	+0.1
2,697,709	+		DZA65_RS12590	0.75	+0.4
2,697,710	-		DZA65_RS12590	0.75	+0.3
2,697,710	-		DZA65_RS12590	0.75	-1.6
2,697,710	-		DZA65_RS12590	0.75	+0.6
2,697,817	+				-1.3
2,697,818	-				-1.8
2,697,838	-				+1.1
2,697,871	-				+2.3
2,698,055	+		DZA65_RS12595	0.52	+0.0
2,698,055	+		DZA65_RS12595	0.52	+0.5
2,698,056	-		DZA65_RS12595	0.53	+0.7
2,698,056	-		DZA65_RS12595	0.53	+0.7
2,698,075	+		DZA65_RS12595	0.58	+2.6
2,698,075	+		DZA65_RS12595	0.58	+1.4
2,698,075	+		DZA65_RS12595	0.58	-0.3
2,698,075	+		DZA65_RS12595	0.58	-0.8
2,698,075	+		DZA65_RS12595	0.58	+2.7
2,698,075	+		DZA65_RS12595	0.58	+0.3
2,698,076	-		DZA65_RS12595	0.58	-0.6
2,698,076	-		DZA65_RS12595	0.58	-0.4
2,698,076	-		DZA65_RS12595	0.58	-0.3
2,698,076	-		DZA65_RS12595	0.58	-0.6
2,698,076	-		DZA65_RS12595	0.58	-0.5
2,698,076	-		DZA65_RS12595	0.58	-0.3
2,698,139	-		DZA65_RS12595	0.76	+0.9
2,698,161	+		DZA65_RS12595	0.83	-0.8
2,698,243	-				+0.3
2,698,243	-				-2.5
2,698,243	-				+1.0
2,698,251	+				-2.4
2,698,295	+				+2.1
2,698,296	-				-1.6
2,698,328	+		DZA65_RS12600	0.11	+0.0
2,698,328	+		DZA65_RS12600	0.11	-0.3
2,698,328	+		DZA65_RS12600	0.11	-0.6
2,698,328	+		DZA65_RS12600	0.11	+0.7
2,698,328	+		DZA65_RS12600	0.11	+0.5
2,698,329	-		DZA65_RS12600	0.11	-0.6
2,698,550	-		DZA65_RS12600	0.36	+1.2
2,698,606	+		DZA65_RS12600	0.42	-2.3
2,698,619	+		DZA65_RS12600	0.43	+0.6
2,698,619	+		DZA65_RS12600	0.43	+0.0
2,698,619	+		DZA65_RS12600	0.43	-0.3
2,698,619	+		DZA65_RS12600	0.43	-0.9
2,698,619	+		DZA65_RS12600	0.43	-0.4
2,698,619	+		DZA65_RS12600	0.43	-0.4
2,698,620	-		DZA65_RS12600	0.43	-0.8
2,698,656	-		DZA65_RS12600	0.47	-0.7
2,698,846	+		DZA65_RS12600	0.68	-0.7
2,698,868	+		DZA65_RS12600	0.71	+0.1
2,698,869	-		DZA65_RS12600	0.71	-1.3
2,698,869	-		DZA65_RS12600	0.71	-1.8
2,698,869	-		DZA65_RS12600	0.71	-1.3
2,698,918	+		DZA65_RS12600	0.76	+0.5
2,698,953	-		DZA65_RS12600	0.80	+2.7
2,698,953	-		DZA65_RS12600	0.80	-0.0
2,698,953	-		DZA65_RS12600	0.80	-0.8
2,699,003	+		DZA65_RS12600	0.85	-2.4
2,699,004	-		DZA65_RS12600	0.86	+1.1
2,699,004	-		DZA65_RS12600	0.86	+0.2
2,699,037	+		DZA65_RS12600	0.89	-0.8
2,699,037	+		DZA65_RS12600	0.89	-0.4
2,699,132	+				+0.7
2,699,132	+				+1.6
2,699,133	-				-0.0
2,699,133	-				-0.3
2,699,268	+		DZA65_RS12605	0.23	-1.0
2,699,269	-		DZA65_RS12605	0.23	-1.6
2,699,269	-		DZA65_RS12605	0.23	-2.4
2,699,269	-		DZA65_RS12605	0.23	+0.5
2,699,572	+		DZA65_RS12605	0.73	+0.7
2,699,623	-		DZA65_RS12605	0.81	-0.0
2,699,623	-		DZA65_RS12605	0.81	-0.6
2,699,623	-		DZA65_RS12605	0.81	-0.8
2,699,624	+		DZA65_RS12605	0.81	+1.7
2,699,646	+		DZA65_RS12605	0.85	+0.7
2,699,646	+		DZA65_RS12605	0.85	+1.3
2,699,647	-		DZA65_RS12605	0.85	+1.7
2,699,647	-		DZA65_RS12605	0.85	-1.6
2,699,652	+		DZA65_RS12605	0.86	+0.7
2,699,652	+		DZA65_RS12605	0.86	+2.5
2,699,653	-		DZA65_RS12605	0.86	-1.8
2,699,653	-		DZA65_RS12605	0.86	+1.7
2,699,653	-		DZA65_RS12605	0.86	-1.3
2,699,653	-		DZA65_RS12605	0.86	-1.8
2,699,855	+				+0.7
2,699,855	+				-1.0
2,699,855	+				+1.3
2,699,856	-				-1.1
2,699,856	-				-0.5
2,699,858	+				-1.1
2,699,858	+				-0.5
2,699,859	-				-2.8
2,699,859	-				-0.3
2,699,859	-				-0.8
2,699,899	+				+0.3
2,699,899	+				+1.6
2,699,949	+				+1.2
2,699,949	+				+0.5
2,699,970	+				-0.8
2,699,970	+				-1.3
2,699,984	-				-3.3
2,699,990	+				+0.4
2,699,990	+				+1.2
2,700,064	+				+0.4