Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11470

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,440,675	+		DZA65_RS11465	0.55	+2.3
2,440,676	-		DZA65_RS11465	0.55	+1.4
2,440,676	-		DZA65_RS11465	0.55	+0.4
2,440,711	+		DZA65_RS11465	0.59	+0.2
2,440,712	-		DZA65_RS11465	0.59	-0.8
2,440,712	-		DZA65_RS11465	0.59	-0.6
2,440,712	-		DZA65_RS11465	0.59	+0.2
2,440,805	-		DZA65_RS11465	0.68	-1.3
2,440,847	-		DZA65_RS11465	0.72	-0.7
2,440,865	+		DZA65_RS11465	0.74	-0.3
2,440,865	+		DZA65_RS11465	0.74	+0.7
2,440,866	-		DZA65_RS11465	0.74	+0.7
2,440,866	-		DZA65_RS11465	0.74	+1.8
2,440,869	+		DZA65_RS11465	0.74	+0.5
2,440,927	+		DZA65_RS11465	0.80	+0.0
2,440,927	+		DZA65_RS11465	0.80	-0.7
2,440,927	+		DZA65_RS11465	0.80	+0.5
2,440,927	+		DZA65_RS11465	0.80	-1.1
2,440,928	-		DZA65_RS11465	0.80	+0.5
2,440,928	-		DZA65_RS11465	0.80	+1.2
2,440,928	-		DZA65_RS11465	0.80	+0.5
2,440,928	-		DZA65_RS11465	0.80	+0.7
2,440,931	+		DZA65_RS11465	0.80	-0.6
2,440,931	+		DZA65_RS11465	0.80	-0.5
2,440,931	+		DZA65_RS11465	0.80	-1.1
2,440,931	+				+1.2
2,440,931	+		DZA65_RS11465	0.80	-1.3
2,440,932	-		DZA65_RS11465	0.81	-0.3
2,440,932	-		DZA65_RS11465	0.81	-1.1
2,440,932	-		DZA65_RS11465	0.81	+0.7
2,440,934	+		DZA65_RS11465	0.81	+0.3
2,440,934	+		DZA65_RS11465	0.81	+0.2
2,440,934	+		DZA65_RS11465	0.81	-1.1
2,440,934	+		DZA65_RS11465	0.81	-0.3
2,440,934	+		DZA65_RS11465	0.81	+3.7
2,440,934	+		DZA65_RS11465	0.81	+1.7
2,440,934	+		DZA65_RS11465	0.81	+1.7
2,440,934	+		DZA65_RS11465	0.81	-0.5
2,440,934	+		DZA65_RS11465	0.81	-0.6
2,440,934	+		DZA65_RS11465	0.81	-0.5
2,440,935	-		DZA65_RS11465	0.81	+1.1
2,440,935	-		DZA65_RS11465	0.81	+0.4
2,440,935	-		DZA65_RS11465	0.81	-0.3
2,440,935	-		DZA65_RS11465	0.81	+1.9
2,440,935	-		DZA65_RS11465	0.81	-0.3
2,440,935	-		DZA65_RS11465	0.81	-0.0
2,440,935	-		DZA65_RS11465	0.81	+1.5
2,440,984	+		DZA65_RS11465	0.86	-0.8
2,440,985	-		DZA65_RS11465	0.86	-0.7
2,440,985	-		DZA65_RS11465	0.86	-2.3
2,440,985	-		DZA65_RS11465	0.86	+0.2
2,440,985	-		DZA65_RS11465	0.86	+0.0
2,440,995	+		DZA65_RS11465	0.87	-2.1
2,440,996	-		DZA65_RS11465	0.87	+1.4
2,440,996	-		DZA65_RS11465	0.87	+0.7
2,440,996	-		DZA65_RS11465	0.87	+0.2
2,441,026	+		DZA65_RS11465	0.90	+0.2
2,441,027	-				+0.0
2,441,027	-				-0.8
2,441,044	+				-1.3
2,441,045	-				-2.4
2,441,147	+				-0.3
2,441,147	+				-1.3
2,441,157	-				+0.5
2,441,160	+				+0.2
2,441,160	+				+0.4
2,441,160	+				-0.6
2,441,160	+				-0.3
2,441,160	+				-1.3
2,441,161	-				-1.8
2,441,161	-				-1.6
2,441,161	-				+0.6
2,441,161	-				-0.3
2,441,161	-				+0.7
2,441,164	+				+0.3
2,441,172	-				+0.7
2,441,172	-				-2.6
2,441,172	-				+0.7
2,441,176	+				+1.7
2,441,237	-				+2.2
2,441,326	+				+1.6
2,441,327	-				-0.3
2,441,331	-				-1.5
2,441,340	-				-1.8
2,441,354	+				+0.7
2,441,355	-				-1.8
2,441,358	+				-1.0
2,441,358	+				+0.2
2,441,359	-				-1.8
2,441,359	-				+0.9
2,441,418	+				+0.0
2,441,421	+				-1.3
2,441,448	+				-0.8
2,441,448	+				-0.5
2,441,448	+				-2.1
2,441,449	-				-1.3
2,441,449	-				+0.1
2,441,449	-				+0.4
2,441,458	-				-0.5
2,441,459	+				-2.3
2,441,459	+				+0.7
2,441,459	+				-0.3
2,441,459	+				-2.3
2,441,460	-				+1.2
2,441,460	-				-0.3
2,441,460	-				+3.1
2,441,460	-				-1.6
2,441,463	+				+0.3
2,441,463	+				+0.7
2,441,463	+				+0.1
2,441,464	-				-0.3
2,441,464	-				-0.4
2,441,464	-				-2.1
2,441,465	+				-2.8
2,441,465	+				-2.6
2,441,466	-				-1.1
2,441,486	+				-1.3
2,441,487	-				+1.3
2,441,502	+				+0.2
2,441,503	-				-0.1
2,441,509	+				-2.7
2,441,509	+				-2.4
2,441,579	+				+0.8
2,441,579	+				+0.5
2,441,579	+				+0.5
2,441,579	+				-0.3
2,441,579	+				+0.0
2,441,579	+				-1.1
2,441,579	+				+0.1
2,441,579	+				-2.1
2,441,579	+				-1.2
2,441,579	+				+0.0
2,441,580	-				+0.7
2,441,580	-				+0.7
2,441,580	-				-1.4
2,441,580	-				+2.7
2,441,580	-				+0.7
2,441,580	-				-0.3
2,441,580	-				-0.3
2,441,580	-				+1.0
2,441,580	-				-0.5
2,441,590	+				+1.3
2,441,672	+				+1.3
2,441,734	+				+0.0
2,441,734	+				-0.2
2,441,734	+				-0.0
2,441,734	+				+0.8
2,441,735	-				-0.8
2,441,735	-				+0.5
2,441,735	-				-2.3
2,441,763	-				-0.3
2,441,856	+		DZA65_RS11470	0.16	-2.4
2,441,856	+		DZA65_RS11470	0.16	-0.5
2,441,856	+		DZA65_RS11470	0.16	+0.7
2,441,857	-		DZA65_RS11470	0.16	+0.2
2,441,927	+		DZA65_RS11470	0.21	+0.4
2,442,039	+		DZA65_RS11470	0.29	-0.3
2,442,039	+		DZA65_RS11470	0.29	+0.7
2,442,039	+		DZA65_RS11470	0.29	+0.2
2,442,039	+				+0.2
2,442,040	-				+1.7
2,442,040	-		DZA65_RS11470	0.29	-2.1
2,442,040	-		DZA65_RS11470	0.29	-2.1
2,442,040	-		DZA65_RS11470	0.29	-1.1
2,442,064	+		DZA65_RS11470	0.31	-2.6
2,442,065	-		DZA65_RS11470	0.31	+1.4
2,442,065	-		DZA65_RS11470	0.31	-0.3
2,442,065	-		DZA65_RS11470	0.31	-0.3
2,442,065	-		DZA65_RS11470	0.31	-0.6
2,442,068	+		DZA65_RS11470	0.31	+1.1
2,442,068	+		DZA65_RS11470	0.31	+0.7
2,442,068	+		DZA65_RS11470	0.31	+0.0
2,442,068	+		DZA65_RS11470	0.31	-0.9
2,442,068	+		DZA65_RS11470	0.31	-0.8
2,442,068	+		DZA65_RS11470	0.31	-0.8
2,442,068	+		DZA65_RS11470	0.31	+0.4
2,442,069	-		DZA65_RS11470	0.31	+1.7
2,442,069	-		DZA65_RS11470	0.31	-0.7
2,442,219	-		DZA65_RS11470	0.42	-1.6
2,442,238	+		DZA65_RS11470	0.44	+1.2
2,442,238	+		DZA65_RS11470	0.44	-1.1
2,442,238	+		DZA65_RS11470	0.44	+0.7
2,442,238	+		DZA65_RS11470	0.44	-0.8
2,442,238	+		DZA65_RS11470	0.44	-1.8
2,442,239	-		DZA65_RS11470	0.44	-0.1
2,442,239	-		DZA65_RS11470	0.44	-1.3
2,442,239	-		DZA65_RS11470	0.44	-0.4
2,442,239	-		DZA65_RS11470	0.44	+1.0
2,442,239	-		DZA65_RS11470	0.44	-1.4
2,442,239	-		DZA65_RS11470	0.44	-0.5
2,442,349	+		DZA65_RS11470	0.52	+0.7
2,442,350	-		DZA65_RS11470	0.52	+1.3
2,442,350	-		DZA65_RS11470	0.52	-2.1
2,442,350	-		DZA65_RS11470	0.52	-0.8
2,442,350	-		DZA65_RS11470	0.52	-1.1
2,442,350	-		DZA65_RS11470	0.52	+0.7
2,442,350	-		DZA65_RS11470	0.52	-0.1
2,442,419	+		DZA65_RS11470	0.57	-1.6
2,442,419	+		DZA65_RS11470	0.57	+0.1
2,442,420	-		DZA65_RS11470	0.57	-0.7
2,442,490	-		DZA65_RS11470	0.62	+2.0
2,442,585	+		DZA65_RS11470	0.69	+0.2
2,442,585	+		DZA65_RS11470	0.69	-0.6
2,442,585	+		DZA65_RS11470	0.69	+1.1
2,442,585	+		DZA65_RS11470	0.69	-0.3
2,442,585	+		DZA65_RS11470	0.69	+1.7
2,442,585	+		DZA65_RS11470	0.69	-0.3
2,442,585	+		DZA65_RS11470	0.69	+0.2
2,442,586	-		DZA65_RS11470	0.69	+3.7
2,442,586	-		DZA65_RS11470	0.69	+0.7
2,442,586	-		DZA65_RS11470	0.69	-1.1
2,442,635	+		DZA65_RS11470	0.73	+0.9
2,442,635	+		DZA65_RS11470	0.73	-0.7
2,442,635	+		DZA65_RS11470	0.73	-0.6
2,442,636	-		DZA65_RS11470	0.73	+0.5
2,442,636	-		DZA65_RS11470	0.73	+1.8
2,442,636	-		DZA65_RS11470	0.73	-1.3
2,442,638	+		DZA65_RS11470	0.73	-0.8
2,442,639	-		DZA65_RS11470	0.73	-1.3
2,442,719	+		DZA65_RS11470	0.79	+2.6
2,442,719	+		DZA65_RS11470	0.79	-2.5
2,442,720	-		DZA65_RS11470	0.79	-0.5
2,442,720	-		DZA65_RS11470	0.79	+0.7
2,442,720	-		DZA65_RS11470	0.79	+1.0
2,442,721	+		DZA65_RS11470	0.79	+2.0
2,442,721	+		DZA65_RS11470	0.79	-0.5
2,442,721	+		DZA65_RS11470	0.79	+0.0
2,442,721	+		DZA65_RS11470	0.79	+0.5
2,442,721	+		DZA65_RS11470	0.79	-0.3
2,442,721	+		DZA65_RS11470	0.79	-0.3
2,442,721	+		DZA65_RS11470	0.79	+0.7
2,442,722	-		DZA65_RS11470	0.79	-0.5
2,442,722	-		DZA65_RS11470	0.79	-0.4
2,442,722	-		DZA65_RS11470	0.79	-0.1
2,442,722	-		DZA65_RS11470	0.79	+0.4
2,442,722	-		DZA65_RS11470	0.79	-0.6
2,442,722	-		DZA65_RS11470	0.79	+2.1
2,442,969	+				+1.4
2,442,969	+				-0.5
2,442,970	-				-1.8
2,442,970	-				+0.4
2,442,970	-				+0.7
2,442,970	-				-1.6
2,442,989	+				-1.1
2,442,989	+				-0.5
2,443,031	+				-1.7
2,443,032	-				-0.3
2,443,032	-				-0.3
2,443,032	-				-0.7
2,443,032	-				+0.7
2,443,032	-				-0.3
2,443,032	-				-0.3
2,443,032	-				-1.6
2,443,032	-				-0.3
2,443,032	-				-0.3
2,443,045	+				-1.8
2,443,045	+				-0.3
2,443,045	+				+1.0
2,443,045	+				-1.3
2,443,046	-				+1.1
2,443,046	-				-0.8
2,443,046	-				-0.8
2,443,046	-				-0.4
2,443,046	-				-0.3
2,443,106	-				-0.0
2,443,168	+				-1.3
2,443,187	+				+1.1
2,443,274	-				-1.4
2,443,309	-				-1.1