Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08835

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Norland
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1,865,663	-	DZA65_RS08830	0.58	-0.1
1,865,725	+	DZA65_RS08830	0.62	+1.0
1,865,725	+	DZA65_RS08830	0.62	+1.1
1,865,725	+	DZA65_RS08830	0.62	+0.4
1,865,737	+	DZA65_RS08830	0.62	+1.3
1,865,738	-	DZA65_RS08830	0.62	-1.8
1,865,745	+	DZA65_RS08830	0.63	+2.2
1,865,840	-	DZA65_RS08830	0.68	+1.8
1,866,067	-	DZA65_RS08830	0.80	-1.4
1,866,218	+	DZA65_RS08830	0.88	-1.6
1,866,219	-	DZA65_RS08830	0.88	-1.6
1,866,225	+	DZA65_RS08830	0.88	+0.5
1,866,235	-	DZA65_RS08830	0.89	+0.9
1,866,235	-	DZA65_RS08830	0.89	+0.4
1,866,279	+			-1.8
1,866,279	+			-0.5
1,866,279	+			-1.6
1,866,280	-			-0.5
1,866,284	+			-0.2
1,866,284	+			+0.3
1,866,284	+			+0.5
1,866,285	-			+0.6
1,866,285	-			-2.1
1,866,285	-			-0.1
1,866,285	-			-1.0
1,866,285	-			-0.8
1,866,311	+			-0.6
1,866,311	+			-0.2
1,866,311	+			-0.2
1,866,312	-			-0.8
1,866,312	-			-0.6
1,866,312	-			-1.1
1,866,327	+			-1.8
1,866,327	+			-2.0
1,866,327	+			+1.0
1,866,328	-			+1.3
1,866,330	+			+0.8
1,866,330	+			+0.1
1,866,330	+			+0.8
1,866,330	+			-1.2
1,866,330	+			-0.2
1,866,331	-			-1.6
1,866,331	-			-2.4
1,866,331	-			-1.2
1,866,352	+			+0.8
1,866,353	-			-0.9
1,866,381	+			+0.3
1,866,381	+			-0.2
1,866,382	-			-1.8
1,866,407	+			+0.8
1,866,407	+			+0.6
1,866,407	+			+1.3
1,866,407	+			+0.6
1,866,408	-			+0.8
1,866,408	-			-2.0
1,866,408	-			-0.2
1,866,408	-			+1.3
1,866,417	-			+0.8
1,866,463	+			+2.0
1,866,463	+			-1.8
1,866,463	+			+1.6
1,866,464	-			-0.8
1,866,464	-			+0.8
1,866,464	-			-0.2
1,866,464	-			-1.4
1,866,470	-			+0.8
1,866,487	-			-1.7
1,866,533	-	DZA65_RS08835	0.13	+0.3
1,866,533	-	DZA65_RS08835	0.13	-2.4
1,866,552	+	DZA65_RS08835	0.17	+1.3
1,866,552	+	DZA65_RS08835	0.17	-1.8
1,866,553	-	DZA65_RS08835	0.17	-0.6
1,866,553	-	DZA65_RS08835	0.17	-0.9
1,866,553	-	DZA65_RS08835	0.17	+0.3
1,866,553	-	DZA65_RS08835	0.17	-0.2
1,866,553	-	DZA65_RS08835	0.17	-1.4
1,866,553	-	DZA65_RS08835	0.17	-2.0
1,866,553	-	DZA65_RS08835	0.17	+0.3
1,866,556	+	DZA65_RS08835	0.18	+0.5
1,866,556	+			-0.2
1,866,556	+	DZA65_RS08835	0.18	-0.4
1,866,556	+	DZA65_RS08835	0.18	-0.2
1,866,556	+	DZA65_RS08835	0.18	-0.8
1,866,557	-	DZA65_RS08835	0.18	-0.8
1,866,557	-	DZA65_RS08835	0.18	-0.6
1,866,557	-	DZA65_RS08835	0.18	-1.9
1,866,644	-	DZA65_RS08835	0.34	-1.6
1,866,644	-	DZA65_RS08835	0.34	+0.7
1,866,686	-	DZA65_RS08835	0.42	-2.2
1,866,686	-	DZA65_RS08835	0.42	+1.3
1,866,703	+	DZA65_RS08835	0.46	+0.3
1,866,704	-	DZA65_RS08835	0.46	+1.2
1,866,733	+	DZA65_RS08835	0.51	-1.8
1,866,734	-	DZA65_RS08835	0.51	-1.7
1,866,740	+	DZA65_RS08835	0.53	-1.5
1,866,740	+	DZA65_RS08835	0.53	+1.7
1,866,740	+	DZA65_RS08835	0.53	-0.5
1,866,740	+	DZA65_RS08835	0.53	-1.7
1,866,740	+	DZA65_RS08835	0.53	+1.0
1,866,740	+	DZA65_RS08835	0.53	+3.1
1,866,740	+	DZA65_RS08835	0.53	+0.3
1,866,740	+	DZA65_RS08835	0.53	+0.6
1,866,741	-	DZA65_RS08835	0.53	+0.5
1,866,741	-	DZA65_RS08835	0.53	-0.8
1,866,741	-	DZA65_RS08835	0.53	+0.3
1,866,741	-	DZA65_RS08835	0.53	+0.3
1,866,741	-	DZA65_RS08835	0.53	-0.4
1,866,741	-	DZA65_RS08835	0.53	-1.6
1,866,741	-	DZA65_RS08835	0.53	-1.6
1,866,741	-	DZA65_RS08835	0.53	+0.1
1,866,741	-	DZA65_RS08835	0.53	-0.8
1,866,741	-	DZA65_RS08835	0.53	-0.6
1,866,741	-	DZA65_RS08835	0.53	+0.8
1,866,741	-	DZA65_RS08835	0.53	+0.2
1,866,741	-	DZA65_RS08835	0.53	-1.8
1,866,741	-	DZA65_RS08835	0.53	+1.8
1,866,741	-	DZA65_RS08835	0.53	+2.8
1,866,752	-	DZA65_RS08835	0.55	+1.5
1,866,762	+	DZA65_RS08835	0.57	+1.0
1,866,763	-	DZA65_RS08835	0.57	-0.1
1,866,854	+	DZA65_RS08835	0.74	-2.6
1,866,854	+	DZA65_RS08835	0.74	-1.6
1,866,854	+	DZA65_RS08835	0.74	+0.2
1,866,854	+	DZA65_RS08835	0.74	+0.2
1,866,859	+	DZA65_RS08835	0.75	-0.8
1,866,859	+	DZA65_RS08835	0.75	-1.2
1,866,881	+	DZA65_RS08835	0.79	-0.4
1,866,882	-	DZA65_RS08835	0.80	-0.5
1,866,882	-	DZA65_RS08835	0.80	-0.0
1,866,921	+	DZA65_RS08835	0.87	-1.2
1,866,921	+	DZA65_RS08835	0.87	-0.8
1,866,921	+	DZA65_RS08835	0.87	+1.8
1,866,922	-	DZA65_RS08835	0.87	+0.1
1,866,922	-	DZA65_RS08835	0.87	+1.0
1,866,930	+	DZA65_RS08835	0.89	-0.1
1,866,930	+	DZA65_RS08835	0.89	-1.6
1,866,956	+			-2.6
1,866,956	+			+1.4
1,866,956	+			+0.8
1,866,956	+			+1.3
1,866,956	+			-1.8
1,866,956	+			-1.4
1,866,957	-			-1.2
1,866,957	-			-2.9
1,866,957	-			+0.6
1,866,957	-			+0.8
1,866,957	-			-2.9
1,866,976	-			-0.9
1,866,976	-			+1.3
1,867,006	-			-0.0
1,867,089	+	DZA65_RS08840	0.12	-2.4
1,867,135	-	DZA65_RS08840	0.17	-1.0
1,867,185	+	DZA65_RS08840	0.22	+0.2
1,867,185	+	DZA65_RS08840	0.22	+1.0
1,867,230	+	DZA65_RS08840	0.28	+0.1
1,867,231	-	DZA65_RS08840	0.28	+0.9
1,867,231	-	DZA65_RS08840	0.28	-1.2
1,867,326	-	DZA65_RS08840	0.39	-0.2
1,867,354	+	DZA65_RS08840	0.42	-0.2
1,867,374	+	DZA65_RS08840	0.44	-1.7
1,867,386	+	DZA65_RS08840	0.45	-2.7
1,867,407	-	DZA65_RS08840	0.48	-0.0
1,867,430	-	DZA65_RS08840	0.50	-0.5
1,867,456	-	DZA65_RS08840	0.53	+3.2
1,867,458	+	DZA65_RS08840	0.54	+0.8
1,867,461	-	DZA65_RS08840	0.54	-1.0
1,867,461	-	DZA65_RS08840	0.54	+2.8
1,867,518	+	DZA65_RS08840	0.61	+1.0
1,867,518	+	DZA65_RS08840	0.61	+0.5
1,867,571	-	DZA65_RS08840	0.67	+0.6
1,867,572	+	DZA65_RS08840	0.67	-0.9
1,867,581	+	DZA65_RS08840	0.68	+0.6
1,867,586	-	DZA65_RS08840	0.68	-1.0
1,867,599	+	DZA65_RS08840	0.70	-0.8
1,867,611	+	DZA65_RS08840	0.71	-0.8
1,867,663	-	DZA65_RS08840	0.77	+1.3
1,867,705	+	DZA65_RS08840	0.82	+1.1
1,867,705	+	DZA65_RS08840	0.82	-1.2
1,867,707	+	DZA65_RS08840	0.82	+1.3
1,867,727	-	DZA65_RS08840	0.84	-0.8
1,867,748	-	DZA65_RS08840	0.87	-0.0
1,867,961	+	DZA65_RS08845	0.18	-2.4

Or see this region's nucleotide sequence