Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01760

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01755 and DZA65_RS01760 are separated by 87 nucleotidesDZA65_RS01760 and DZA65_RS01765 are separated by 59 nucleotides DZA65_RS01755: DZA65_RS01755 - 1-acylglycerol-3-phosphate O-acyltransferase, at 382,394 to 383,131 _RS01755 DZA65_RS01760: DZA65_RS01760 - cell division protein FtsP, at 383,219 to 384,637 _RS01760 DZA65_RS01765: DZA65_RS01765 - 2,5-didehydrogluconate reductase DkgA, at 384,697 to 385,542 _RS01765 Position (kb) 383 384 385Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 382.290 kb on + strandat 382.290 kb on + strandat 382.290 kb on + strandat 382.290 kb on + strandat 382.290 kb on + strandat 382.291 kb on - strandat 382.291 kb on - strandat 382.291 kb on - strandat 382.345 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.364 kb on + strandat 382.364 kb on + strandat 383.129 kb on + strandat 383.129 kb on + strandat 383.130 kb on - strandat 383.130 kb on - strandat 383.130 kb on - strandat 383.190 kb on - strandat 383.190 kb on - strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.219 kb on - strandat 383.219 kb on - strandat 383.219 kb on - strandat 383.219 kb on - strandat 383.490 kb on - strand, within DZA65_RS01760at 383.490 kb on - strand, within DZA65_RS01760at 383.572 kb on + strand, within DZA65_RS01760at 383.588 kb on - strand, within DZA65_RS01760at 383.639 kb on + strand, within DZA65_RS01760at 383.639 kb on + strand, within DZA65_RS01760at 383.639 kb on + strand, within DZA65_RS01760at 383.640 kb on - strand, within DZA65_RS01760at 383.640 kb on - strand, within DZA65_RS01760at 383.650 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.680 kb on + strand, within DZA65_RS01760at 383.680 kb on + strand, within DZA65_RS01760at 383.681 kb on - strand, within DZA65_RS01760at 383.722 kb on + strand, within DZA65_RS01760at 383.722 kb on + strand, within DZA65_RS01760at 383.722 kb on + strand, within DZA65_RS01760at 383.723 kb on - strand, within DZA65_RS01760at 383.773 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.814 kb on - strand, within DZA65_RS01760at 383.814 kb on - strand, within DZA65_RS01760at 383.814 kb on - strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.942 kb on + strand, within DZA65_RS01760at 383.942 kb on + strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strandat 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 384.070 kb on + strand, within DZA65_RS01760at 384.070 kb on + strand, within DZA65_RS01760at 384.082 kb on + strand, within DZA65_RS01760at 384.154 kb on + strand, within DZA65_RS01760at 384.154 kb on + strand, within DZA65_RS01760at 384.155 kb on - strand, within DZA65_RS01760at 384.155 kb on - strand, within DZA65_RS01760at 384.157 kb on + strand, within DZA65_RS01760at 384.158 kb on - strand, within DZA65_RS01760at 384.158 kb on - strand, within DZA65_RS01760at 384.158 kb on - strand, within DZA65_RS01760at 384.158 kb on - strand, within DZA65_RS01760at 384.180 kb on + strand, within DZA65_RS01760at 384.181 kb on - strand, within DZA65_RS01760at 384.181 kb on - strand, within DZA65_RS01760at 384.220 kb on + strand, within DZA65_RS01760at 384.220 kb on + strand, within DZA65_RS01760at 384.220 kb on + strand, within DZA65_RS01760at 384.220 kb on + strand, within DZA65_RS01760at 384.221 kb on - strand, within DZA65_RS01760at 384.250 kb on + strand, within DZA65_RS01760at 384.250 kb on + strand, within DZA65_RS01760at 384.250 kb on + strand, within DZA65_RS01760at 384.250 kb on + strand, within DZA65_RS01760at 384.251 kb on - strand, within DZA65_RS01760at 384.348 kb on + strand, within DZA65_RS01760at 384.348 kb on + strand, within DZA65_RS01760at 384.348 kb on + strand, within DZA65_RS01760at 384.348 kb on + strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.349 kb on - strand, within DZA65_RS01760at 384.369 kb on - strand, within DZA65_RS01760at 384.492 kb on + strand, within DZA65_RS01760at 384.493 kb on - strand, within DZA65_RS01760at 384.493 kb on - strandat 384.524 kb on + strandat 384.524 kb on + strandat 384.524 kb on + strandat 384.524 kb on + strandat 384.524 kb on + strandat 384.525 kb on - strandat 384.525 kb on - strandat 384.525 kb on - strandat 384.525 kb on - strandat 384.525 kb on - strandat 384.564 kb on - strandat 384.564 kb on - strandat 384.564 kb on - strandat 384.564 kb on - strandat 384.566 kb on + strandat 384.566 kb on + strandat 384.567 kb on - strandat 384.567 kb on - strandat 384.768 kb on + strandat 384.781 kb on + strandat 384.781 kb on + strandat 384.918 kb on - strand, within DZA65_RS01765at 384.956 kb on - strand, within DZA65_RS01765at 385.071 kb on + strand, within DZA65_RS01765at 385.071 kb on + strand, within DZA65_RS01765at 385.165 kb on - strand, within DZA65_RS01765at 385.165 kb on - strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.196 kb on + strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.197 kb on - strand, within DZA65_RS01765at 385.232 kb on + strand, within DZA65_RS01765at 385.232 kb on + strand, within DZA65_RS01765at 385.233 kb on - strand, within DZA65_RS01765at 385.233 kb on - strand, within DZA65_RS01765at 385.233 kb on - strand, within DZA65_RS01765at 385.233 kb on - strand, within DZA65_RS01765at 385.245 kb on - strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.255 kb on + strand, within DZA65_RS01765at 385.256 kb on - strand, within DZA65_RS01765at 385.256 kb on - strand, within DZA65_RS01765at 385.256 kb on - strand, within DZA65_RS01765at 385.256 kb on - strand, within DZA65_RS01765at 385.332 kb on + strand, within DZA65_RS01765at 385.333 kb on - strand, within DZA65_RS01765at 385.503 kb on + strandat 385.503 kb on + strandat 385.542 kb on + strandat 385.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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382,290 + -1.2
382,290 + +0.2
382,290 + +0.2
382,290 + -0.4
382,290 + -2.6
382,291 - -3.2
382,291 - -0.4
382,291 - -0.9
382,345 + +1.4
382,361 + +0.9
382,361 + +1.2
382,361 + -0.6
382,361 + +0.2
382,361 + -2.2
382,361 + -2.2
382,361 + -0.6
382,364 + +0.2
382,364 + +0.2
383,129 + -2.2
383,129 + +0.0
383,130 - -0.2
383,130 - +0.8
383,130 - +3.2
383,190 - +0.2
383,190 - +2.2
383,218 + +0.2
383,218 + -2.2
383,218 + +0.2
383,218 + -2.0
383,218 + +2.5
383,218 + -2.0
383,219 - +0.3
383,219 - -2.0
383,219 - +1.2
383,219 - +0.2
383,490 - DZA65_RS01760 0.19 -0.8
383,490 - DZA65_RS01760 0.19 -1.2
383,572 + DZA65_RS01760 0.25 +0.2
383,588 - DZA65_RS01760 0.26 +1.0
383,639 + DZA65_RS01760 0.30 +1.2
383,639 + DZA65_RS01760 0.30 -0.4
383,639 + DZA65_RS01760 0.30 +0.7
383,640 - DZA65_RS01760 0.30 +1.2
383,640 - DZA65_RS01760 0.30 -0.3
383,650 + DZA65_RS01760 0.30 +0.9
383,678 + DZA65_RS01760 0.32 -1.4
383,678 + DZA65_RS01760 0.32 +2.0
383,678 + DZA65_RS01760 0.32 +1.2
383,678 + DZA65_RS01760 0.32 -0.9
383,679 - DZA65_RS01760 0.32 +1.9
383,679 - DZA65_RS01760 0.32 +0.5
383,679 - DZA65_RS01760 0.32 -0.4
383,679 - DZA65_RS01760 0.32 -0.8
383,679 - DZA65_RS01760 0.32 -1.4
383,680 + DZA65_RS01760 0.32 +0.0
383,680 + DZA65_RS01760 0.32 +0.4
383,681 - DZA65_RS01760 0.33 -1.4
383,722 + DZA65_RS01760 0.35 +0.6
383,722 + DZA65_RS01760 0.35 -0.5
383,722 + DZA65_RS01760 0.35 +0.8
383,723 - DZA65_RS01760 0.36 +0.3
383,773 + DZA65_RS01760 0.39 +0.2
383,813 + DZA65_RS01760 0.42 -1.4
383,813 + DZA65_RS01760 0.42 -2.3
383,813 + DZA65_RS01760 0.42 +1.1
383,813 + DZA65_RS01760 0.42 -1.4
383,814 - DZA65_RS01760 0.42 -0.8
383,814 - DZA65_RS01760 0.42 -1.2
383,814 - DZA65_RS01760 0.42 -0.8
383,848 + DZA65_RS01760 0.44 -2.6
383,848 + DZA65_RS01760 0.44 -0.3
383,848 + DZA65_RS01760 0.44 +0.2
383,848 + DZA65_RS01760 0.44 +0.2
383,848 + DZA65_RS01760 0.44 -1.6
383,849 - DZA65_RS01760 0.44 +0.2
383,849 - DZA65_RS01760 0.44 -2.4
383,849 - DZA65_RS01760 0.44 +0.4
383,849 - DZA65_RS01760 0.44 -0.3
383,849 - DZA65_RS01760 0.44 -0.3
383,879 + DZA65_RS01760 0.47 -2.2
383,879 + DZA65_RS01760 0.47 -3.8
383,879 + DZA65_RS01760 0.47 +0.8
383,879 + DZA65_RS01760 0.47 -1.2
383,879 + DZA65_RS01760 0.47 -0.3
383,880 - DZA65_RS01760 0.47 -1.4
383,880 - DZA65_RS01760 0.47 -0.8
383,880 - DZA65_RS01760 0.47 +0.2
383,880 - DZA65_RS01760 0.47 +0.8
383,880 - DZA65_RS01760 0.47 -1.7
383,880 - DZA65_RS01760 0.47 +1.2
383,942 + DZA65_RS01760 0.51 -0.8
383,942 + DZA65_RS01760 0.51 -0.7
383,943 - DZA65_RS01760 0.51 +0.2
383,943 - -1.4
383,943 - DZA65_RS01760 0.51 +0.4
383,943 - DZA65_RS01760 0.51 -2.0
383,943 - DZA65_RS01760 0.51 +0.3
383,943 - DZA65_RS01760 0.51 +0.2
384,070 + DZA65_RS01760 0.60 -0.8
384,070 + DZA65_RS01760 0.60 -2.5
384,082 + DZA65_RS01760 0.61 +1.2
384,154 + DZA65_RS01760 0.66 -1.5
384,154 + DZA65_RS01760 0.66 -1.4
384,155 - DZA65_RS01760 0.66 +0.8
384,155 - DZA65_RS01760 0.66 -2.3
384,157 + DZA65_RS01760 0.66 -0.4
384,158 - DZA65_RS01760 0.66 -0.8
384,158 - DZA65_RS01760 0.66 -0.9
384,158 - DZA65_RS01760 0.66 -1.4
384,158 - DZA65_RS01760 0.66 -0.4
384,180 + DZA65_RS01760 0.68 -0.3
384,181 - DZA65_RS01760 0.68 -2.0
384,181 - DZA65_RS01760 0.68 +0.2
384,220 + DZA65_RS01760 0.71 +1.3
384,220 + DZA65_RS01760 0.71 -0.6
384,220 + DZA65_RS01760 0.71 -0.4
384,220 + DZA65_RS01760 0.71 -0.4
384,221 - DZA65_RS01760 0.71 +0.7
384,250 + DZA65_RS01760 0.73 +0.8
384,250 + DZA65_RS01760 0.73 +0.2
384,250 + DZA65_RS01760 0.73 +2.7
384,250 + DZA65_RS01760 0.73 +0.3
384,251 - DZA65_RS01760 0.73 +0.2
384,348 + DZA65_RS01760 0.80 -0.4
384,348 + DZA65_RS01760 0.80 +0.3
384,348 + DZA65_RS01760 0.80 -1.6
384,348 + DZA65_RS01760 0.80 +0.2
384,349 - DZA65_RS01760 0.80 -1.4
384,349 - DZA65_RS01760 0.80 -0.4
384,349 - DZA65_RS01760 0.80 -2.2
384,349 - DZA65_RS01760 0.80 +0.2
384,349 - DZA65_RS01760 0.80 +0.2
384,349 - DZA65_RS01760 0.80 +0.7
384,349 - DZA65_RS01760 0.80 -0.2
384,349 - DZA65_RS01760 0.80 +0.2
384,369 - DZA65_RS01760 0.81 -0.8
384,492 + DZA65_RS01760 0.90 -0.8
384,493 - DZA65_RS01760 0.90 +1.4
384,493 - +1.6
384,524 + +0.5
384,524 + -2.4
384,524 + +0.7
384,524 + -2.0
384,524 + -1.5
384,525 - -0.8
384,525 - +2.6
384,525 - -1.6
384,525 - -1.6
384,525 - -1.2
384,564 - -1.4
384,564 - +2.2
384,564 - +0.8
384,564 - -1.3
384,566 + -2.2
384,566 + +1.6
384,567 - -0.4
384,567 - -0.8
384,768 + +1.7
384,781 + -1.8
384,781 + +0.6
384,918 - DZA65_RS01765 0.26 +0.8
384,956 - DZA65_RS01765 0.31 +1.2
385,071 + DZA65_RS01765 0.44 +1.2
385,071 + DZA65_RS01765 0.44 +2.0
385,165 - DZA65_RS01765 0.55 -0.2
385,165 - DZA65_RS01765 0.55 +0.2
385,196 + DZA65_RS01765 0.59 +1.4
385,196 + DZA65_RS01765 0.59 -0.2
385,196 + DZA65_RS01765 0.59 +0.9
385,196 + DZA65_RS01765 0.59 -2.2
385,196 + DZA65_RS01765 0.59 -1.8
385,196 + DZA65_RS01765 0.59 +0.8
385,196 + DZA65_RS01765 0.59 -0.4
385,196 + DZA65_RS01765 0.59 -2.5
385,196 + DZA65_RS01765 0.59 -0.6
385,196 + DZA65_RS01765 0.59 -0.2
385,196 + DZA65_RS01765 0.59 +0.2
385,196 + DZA65_RS01765 0.59 +0.8
385,196 + DZA65_RS01765 0.59 -0.4
385,196 + DZA65_RS01765 0.59 +1.2
385,197 - DZA65_RS01765 0.59 +1.8
385,197 - DZA65_RS01765 0.59 -1.5
385,197 - DZA65_RS01765 0.59 -1.8
385,197 - DZA65_RS01765 0.59 -1.5
385,197 - DZA65_RS01765 0.59 -1.8
385,197 - DZA65_RS01765 0.59 -1.0
385,197 - DZA65_RS01765 0.59 +0.2
385,197 - DZA65_RS01765 0.59 -0.8
385,232 + DZA65_RS01765 0.63 +0.2
385,232 + DZA65_RS01765 0.63 +1.6
385,233 - DZA65_RS01765 0.63 +1.3
385,233 - DZA65_RS01765 0.63 +0.6
385,233 - DZA65_RS01765 0.63 +1.2
385,233 - DZA65_RS01765 0.63 -1.8
385,245 - DZA65_RS01765 0.65 -1.2
385,255 + DZA65_RS01765 0.66 +0.2
385,255 + DZA65_RS01765 0.66 +0.2
385,255 + DZA65_RS01765 0.66 +2.2
385,255 + DZA65_RS01765 0.66 -2.1
385,255 + DZA65_RS01765 0.66 -1.4
385,255 + DZA65_RS01765 0.66 -0.2
385,255 + DZA65_RS01765 0.66 -0.8
385,255 + DZA65_RS01765 0.66 -0.6
385,256 - DZA65_RS01765 0.66 -1.7
385,256 - DZA65_RS01765 0.66 -0.1
385,256 - DZA65_RS01765 0.66 -3.1
385,256 - DZA65_RS01765 0.66 +0.6
385,332 + DZA65_RS01765 0.75 +0.7
385,333 - DZA65_RS01765 0.75 -2.9
385,503 + -0.8
385,503 + -0.9
385,542 + -0.7
385,543 - +0.6

Or see this region's nucleotide sequence