Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20110

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,355,749	-		DZA65_RS20100	0.35	+0.6
4,355,754	+		DZA65_RS20100	0.36	-2.0
4,355,754	+		DZA65_RS20100	0.36	-1.9
4,355,755	-		DZA65_RS20100	0.36	-2.3
4,355,755	-		DZA65_RS20100	0.36	+1.5
4,355,764	+		DZA65_RS20100	0.37	+2.1
4,355,814	-		DZA65_RS20100	0.42	-1.2
4,355,814	-		DZA65_RS20100	0.42	+0.3
4,355,814	-		DZA65_RS20100	0.42	-0.0
4,355,830	+		DZA65_RS20100	0.44	+1.3
4,355,830	+		DZA65_RS20100	0.44	+0.3
4,355,831	-		DZA65_RS20100	0.44	-1.5
4,355,831	-		DZA65_RS20100	0.44	+1.7
4,355,831	-		DZA65_RS20100	0.44	-2.4
4,355,854	+		DZA65_RS20100	0.46	+0.3
4,355,854	+		DZA65_RS20100	0.46	-0.7
4,355,854	+		DZA65_RS20100	0.46	+2.1
4,355,854	+		DZA65_RS20100	0.46	-1.0
4,355,855	-		DZA65_RS20100	0.46	-2.5
4,355,855	-		DZA65_RS20100	0.46	-1.3
4,355,855	-		DZA65_RS20100	0.46	-0.7
4,355,883	-		DZA65_RS20100	0.49	-2.0
4,355,883	-		DZA65_RS20100	0.49	+0.8
4,355,919	-		DZA65_RS20100	0.53	+0.2
4,355,919	-		DZA65_RS20100	0.53	-2.0
4,355,919	-		DZA65_RS20100	0.53	+0.1
4,355,919	-		DZA65_RS20100	0.53	+0.3
4,355,979	+		DZA65_RS20100	0.59	-0.2
4,355,980	-		DZA65_RS20100	0.59	+1.7
4,356,123	-		DZA65_RS20100	0.74	+1.7
4,356,131	+		DZA65_RS20100	0.75	+2.3
4,356,176	-		DZA65_RS20100	0.80	-3.3
4,356,176	-		DZA65_RS20100	0.80	+2.5
4,356,176	-		DZA65_RS20100	0.80	+1.1
4,356,179	+		DZA65_RS20100	0.80	-2.4
4,356,188	+		DZA65_RS20100	0.81	+0.6
4,356,258	-		DZA65_RS20100	0.88	+3.3
4,356,289	+				-1.9
4,356,306	+				+1.3
4,356,308	+				-1.9
4,356,309	-				-0.5
4,356,309	-				+0.3
4,356,309	-				+2.0
4,356,311	-				-0.6
4,356,311	-				+0.2
4,356,329	+				-1.0
4,356,329	+				+1.0
4,356,330	-				-0.3
4,356,334	-				-1.0
4,356,393	+				-1.0
4,356,414	-				-1.0
4,356,480	-		DZA65_RS20105	0.10	+0.1
4,356,492	+		DZA65_RS20105	0.15	+1.1
4,356,492	+		DZA65_RS20105	0.15	+1.3
4,356,492	+		DZA65_RS20105	0.15	-1.3
4,356,493	-		DZA65_RS20105	0.15	+1.1
4,356,493	-		DZA65_RS20105	0.15	+1.3
4,356,589	+		DZA65_RS20105	0.51	+0.3
4,356,614	+		DZA65_RS20105	0.61	-0.3
4,356,814	+				+0.9
4,356,814	+				+0.3
4,356,814	+				+1.7
4,356,814	+				-1.0
4,356,814	+				-2.4
4,356,814	+				-1.9
4,356,814	+				-1.8
4,356,814	+				-1.0
4,356,814	+				+2.0
4,356,815	-				-2.2
4,356,815	-				-0.7
4,356,816	+				-0.4
4,356,816	+				-0.3
4,356,816	+				+0.9
4,356,816	+				-1.0
4,356,816	+				-1.1
4,356,816	+				+0.3
4,356,817	-				-0.7
4,356,817	-				+1.0
4,356,817	-				-0.8
4,356,817	-				-1.0
4,356,817	-				-1.0
4,356,818	+				-0.5
4,356,860	+				-0.7
4,356,860	+				+0.5
4,356,860	+				-0.3
4,356,861	-				-2.0
4,356,920	+		DZA65_RS20110	0.13	-2.2
4,356,920	+		DZA65_RS20110	0.13	-1.5
4,356,920	+		DZA65_RS20110	0.13	+0.6
4,356,920	+		DZA65_RS20110	0.13	+0.9
4,356,920	+		DZA65_RS20110	0.13	-0.3
4,356,920	+		DZA65_RS20110	0.13	+0.7
4,356,920	+		DZA65_RS20110	0.13	+3.6
4,356,920	+		DZA65_RS20110	0.13	+3.6
4,356,920	+		DZA65_RS20110	0.13	-2.4
4,356,920	+		DZA65_RS20110	0.13	+0.3
4,356,920	+		DZA65_RS20110	0.13	-1.0
4,356,920	+		DZA65_RS20110	0.13	-0.3
4,356,920	+		DZA65_RS20110	0.13	-0.6
4,356,920	+		DZA65_RS20110	0.13	-1.7
4,356,920	+		DZA65_RS20110	0.13	+1.3
4,356,921	-				+0.5
4,356,921	-		DZA65_RS20110	0.13	-2.0
4,356,921	-		DZA65_RS20110	0.13	+0.4
4,356,921	-		DZA65_RS20110	0.13	-1.0
4,356,921	-		DZA65_RS20110	0.13	-2.2
4,356,921	-		DZA65_RS20110	0.13	-0.7
4,356,921	-		DZA65_RS20110	0.13	-0.7
4,356,921	-		DZA65_RS20110	0.13	+1.6
4,356,921	-		DZA65_RS20110	0.13	+0.3
4,356,921	-		DZA65_RS20110	0.13	-1.7
4,356,950	-		DZA65_RS20110	0.15	-1.5
4,357,047	+		DZA65_RS20110	0.21	+0.1
4,357,048	-		DZA65_RS20110	0.21	+1.9
4,357,051	+		DZA65_RS20110	0.21	-1.0
4,357,051	+		DZA65_RS20110	0.21	+1.7
4,357,051	+		DZA65_RS20110	0.21	+1.3
4,357,051	+		DZA65_RS20110	0.21	-1.5
4,357,052	-		DZA65_RS20110	0.21	+1.3
4,357,052	-		DZA65_RS20110	0.21	+0.8
4,357,052	-		DZA65_RS20110	0.21	-1.7
4,357,052	-		DZA65_RS20110	0.21	-0.9
4,357,052	-		DZA65_RS20110	0.21	-0.3
4,357,052	-		DZA65_RS20110	0.21	-1.6
4,357,052	-		DZA65_RS20110	0.21	-0.7
4,357,052	-		DZA65_RS20110	0.21	-0.6
4,357,052	-		DZA65_RS20110	0.21	-1.4
4,357,076	+		DZA65_RS20110	0.23	-1.7
4,357,076	+		DZA65_RS20110	0.23	-0.9
4,357,077	-		DZA65_RS20110	0.23	+0.1
4,357,077	-		DZA65_RS20110	0.23	-1.6
4,357,079	+		DZA65_RS20110	0.23	+1.8
4,357,096	-		DZA65_RS20110	0.24	-1.3
4,357,098	+		DZA65_RS20110	0.24	-1.0
4,357,133	-		DZA65_RS20110	0.27	+1.1
4,357,244	-		DZA65_RS20110	0.34	-1.5
4,357,252	-				+0.3
4,357,356	+		DZA65_RS20110	0.41	-1.9
4,357,356	+		DZA65_RS20110	0.41	+0.7
4,357,357	-		DZA65_RS20110	0.41	-0.7
4,357,357	-		DZA65_RS20110	0.41	+0.5
4,357,360	+		DZA65_RS20110	0.42	-1.7
4,357,360	+		DZA65_RS20110	0.42	-0.7
4,357,360	+		DZA65_RS20110	0.42	-0.7
4,357,361	-		DZA65_RS20110	0.42	-1.5
4,357,361	-		DZA65_RS20110	0.42	-2.2
4,357,447	+		DZA65_RS20110	0.47	-1.0
4,357,529	+		DZA65_RS20110	0.53	-0.3
4,357,577	+		DZA65_RS20110	0.56	-1.3
4,357,635	-		DZA65_RS20110	0.59	+0.5
4,357,635	-		DZA65_RS20110	0.59	-2.2
4,357,663	-		DZA65_RS20110	0.61	+1.3
4,357,671	+		DZA65_RS20110	0.62	-0.3
4,357,672	-		DZA65_RS20110	0.62	-2.3
4,357,706	+		DZA65_RS20110	0.64	-2.6
4,357,707	-		DZA65_RS20110	0.64	+0.5
4,357,707	-		DZA65_RS20110	0.64	+1.6
4,357,728	-		DZA65_RS20110	0.65	+0.3
4,357,781	-		DZA65_RS20110	0.69	+0.6
4,357,791	+		DZA65_RS20110	0.70	-2.4
4,357,791	+		DZA65_RS20110	0.70	+0.1
4,357,791	+		DZA65_RS20110	0.70	-2.3
4,357,791	+		DZA65_RS20110	0.70	-0.5
4,357,791	+		DZA65_RS20110	0.70	-1.7
4,357,791	+		DZA65_RS20110	0.70	-2.8
4,357,791	+		DZA65_RS20110	0.70	-2.4
4,357,792	-		DZA65_RS20110	0.70	-2.2
4,357,792	-		DZA65_RS20110	0.70	+0.3
4,357,795	+		DZA65_RS20110	0.70	+2.6
4,357,795	+		DZA65_RS20110	0.70	+1.7
4,357,795	+		DZA65_RS20110	0.70	-1.0
4,357,798	+		DZA65_RS20110	0.70	-0.5
4,357,798	+		DZA65_RS20110	0.70	-0.0
4,357,798	+		DZA65_RS20110	0.70	+1.3
4,357,799	-		DZA65_RS20110	0.70	+1.3
4,357,799	-		DZA65_RS20110	0.70	-1.5
4,357,799	-		DZA65_RS20110	0.70	+0.6
4,357,800	+		DZA65_RS20110	0.70	+3.5
4,357,800	+		DZA65_RS20110	0.70	-0.3
4,357,800	+		DZA65_RS20110	0.70	-0.0
4,357,800	+		DZA65_RS20110	0.70	-1.0
4,357,801	-		DZA65_RS20110	0.70	-2.0
4,357,801	-		DZA65_RS20110	0.70	-1.7
4,357,801	-		DZA65_RS20110	0.70	+2.1
4,357,808	-		DZA65_RS20110	0.71	-1.9
4,357,810	+		DZA65_RS20110	0.71	-1.5
4,357,811	-		DZA65_RS20110	0.71	-0.3
4,357,811	-		DZA65_RS20110	0.71	-0.1
4,357,887	+		DZA65_RS20110	0.76	-1.0
4,357,888	-		DZA65_RS20110	0.76	-1.4
4,357,888	-		DZA65_RS20110	0.76	-1.0
4,357,888	-		DZA65_RS20110	0.76	-1.0
4,357,888	-		DZA65_RS20110	0.76	-0.4
4,357,888	-		DZA65_RS20110	0.76	-1.2
4,357,891	-		DZA65_RS20110	0.76	-1.3
4,357,901	+		DZA65_RS20110	0.77	-1.7
4,357,901	+		DZA65_RS20110	0.77	-1.7
4,357,901	+		DZA65_RS20110	0.77	-0.9
4,357,901	+		DZA65_RS20110	0.77	+0.3
4,357,901	+		DZA65_RS20110	0.77	+0.3
4,357,901	+				-1.7
4,357,901	+		DZA65_RS20110	0.77	-1.5
4,357,901	+		DZA65_RS20110	0.77	-1.0
4,357,902	-		DZA65_RS20110	0.77	+0.5
4,357,902	-		DZA65_RS20110	0.77	-1.7
4,357,902	-		DZA65_RS20110	0.77	+1.0
4,357,902	-		DZA65_RS20110	0.77	-0.6
4,357,902	-		DZA65_RS20110	0.77	-2.5
4,357,902	-		DZA65_RS20110	0.77	+1.3
4,357,902	-		DZA65_RS20110	0.77	-2.0
4,357,902	-		DZA65_RS20110	0.77	-0.3
4,357,933	+		DZA65_RS20110	0.79	-1.2
4,357,934	-		DZA65_RS20110	0.79	-0.0
4,357,934	-		DZA65_RS20110	0.79	+0.9
4,357,978	+		DZA65_RS20110	0.82	+0.7
4,357,992	+		DZA65_RS20110	0.83	-1.2
4,357,992	+		DZA65_RS20110	0.83	-0.9
4,357,992	+		DZA65_RS20110	0.83	-2.3
4,357,992	+		DZA65_RS20110	0.83	+0.3
4,357,992	+		DZA65_RS20110	0.83	-2.2
4,357,992	+		DZA65_RS20110	0.83	-0.0
4,357,992	+		DZA65_RS20110	0.83	-1.0
4,357,992	+		DZA65_RS20110	0.83	-0.3
4,357,992	+		DZA65_RS20110	0.83	-2.6
4,357,993	-		DZA65_RS20110	0.83	-0.3
4,357,993	-		DZA65_RS20110	0.83	+1.6
4,357,993	-		DZA65_RS20110	0.83	-0.2
4,357,993	-		DZA65_RS20110	0.83	+0.7
4,358,007	+		DZA65_RS20110	0.84	+0.5
4,358,007	+		DZA65_RS20110	0.84	+0.9
4,358,007	+		DZA65_RS20110	0.84	-1.3
4,358,007	+		DZA65_RS20110	0.84	+0.1
4,358,008	-		DZA65_RS20110	0.84	+0.3
4,358,008	-		DZA65_RS20110	0.84	-0.5
4,358,008	-				+0.7
4,358,008	-		DZA65_RS20110	0.84	-0.0
4,358,096	+		DZA65_RS20110	0.89	+1.3
4,358,132	+				+0.3
4,358,132	+				+0.2
4,358,132	+				-0.7
4,358,132	+				-2.2
4,358,132	+				+2.4
4,358,132	+				-0.0
4,358,132	+				-0.5
4,358,132	+				+0.4
4,358,132	+				-2.3
4,358,133	-				+0.2
4,358,133	-				-1.2
4,358,133	-				-0.5
4,358,133	-				+0.1
4,358,133	-				+0.9
4,358,133	-				+0.0
4,358,133	-				-0.6
4,358,133	-				-2.2
4,358,133	-				-0.8
4,358,139	+				-2.0
4,358,139	+				-2.7
4,358,140	-				+0.0
4,358,140	-				-2.2
4,358,140	-				-1.9
4,358,140	-				-1.9
4,358,140	-				-1.3
4,358,140	-				+0.2
4,358,140	-				+0.1
4,358,140	-				-2.0
4,358,140	-				-1.7
4,358,140	-				+1.0
4,358,140	-				-1.3
4,358,140	-				+0.1
4,358,173	+				-1.5
4,358,174	-				-0.6
4,358,174	-				-0.3
4,358,174	-				-0.4
4,358,201	+				-0.7
4,358,202	-				+0.7
4,358,231	+				+2.0
4,358,311	+				-1.3
4,358,340	+				+0.3
4,358,362	+				-2.0
4,358,387	+				+0.3
4,358,399	-				+0.3
4,358,399	-				+0.7
4,358,452	+				-0.3
4,358,453	-				+1.3
4,358,453	-				+0.4
4,358,453	-				-2.2
4,358,453	-				+1.7
4,358,453	-				-0.5
4,358,453	-				+0.3
4,358,453	-				-1.5
4,358,453	-				+2.0
4,358,453	-				+0.5
4,358,453	-				-0.4
4,358,510	+				-0.7
4,358,510	+				+1.3
4,358,511	-				+0.8
4,358,601	+				-1.9
4,358,675	-				+1.3
4,358,796	+		DZA65_RS20115	0.21	-0.7
4,358,796	+		DZA65_RS20115	0.21	-0.3
4,358,797	-		DZA65_RS20115	0.21	+0.4
4,358,797	-		DZA65_RS20115	0.21	-2.3
4,358,836	+		DZA65_RS20115	0.25	-0.7
4,358,836	+		DZA65_RS20115	0.25	-0.8
4,358,836	+		DZA65_RS20115	0.25	+0.4
4,358,836	+		DZA65_RS20115	0.25	-0.9
4,358,837	-		DZA65_RS20115	0.25	-0.3
4,358,837	-		DZA65_RS20115	0.25	-0.0
4,358,848	+		DZA65_RS20115	0.26	-1.7
4,358,848	+		DZA65_RS20115	0.26	-1.3
4,358,848	+		DZA65_RS20115	0.26	+1.0
4,358,848	+		DZA65_RS20115	0.26	+1.0
4,358,848	+		DZA65_RS20115	0.26	-2.5
4,358,848	+		DZA65_RS20115	0.26	+0.3
4,358,848	+		DZA65_RS20115	0.26	-0.3
4,358,849	-		DZA65_RS20115	0.26	-1.5
4,358,849	-		DZA65_RS20115	0.26	-0.0
4,358,849	-		DZA65_RS20115	0.26	-1.0
4,358,849	-		DZA65_RS20115	0.26	-0.3
4,358,849	-		DZA65_RS20115	0.26	-0.5
4,358,849	-		DZA65_RS20115	0.26	-1.3
4,358,852	+		DZA65_RS20115	0.27	+1.3
4,358,852	+		DZA65_RS20115	0.27	-0.6
4,358,868	+		DZA65_RS20115	0.28	-2.4
4,358,868	+		DZA65_RS20115	0.28	-3.0
4,358,883	+		DZA65_RS20115	0.30	+1.1
4,358,883	+		DZA65_RS20115	0.30	+1.4
4,358,883	+		DZA65_RS20115	0.30	+0.7
4,358,883	+		DZA65_RS20115	0.30	-1.7
4,358,883	+		DZA65_RS20115	0.30	+0.4
4,358,883	+		DZA65_RS20115	0.30	-0.9
4,358,884	-		DZA65_RS20115	0.30	+1.4
4,358,884	-		DZA65_RS20115	0.30	+0.3
4,358,884	-		DZA65_RS20115	0.30	+1.2
4,358,884	-		DZA65_RS20115	0.30	-2.5
4,358,884	-		DZA65_RS20115	0.30	-1.0
4,358,884	-		DZA65_RS20115	0.30	+2.3
4,358,904	+		DZA65_RS20115	0.32	-1.7
4,358,904	+		DZA65_RS20115	0.32	-1.3
4,358,904	+		DZA65_RS20115	0.32	+0.9
4,358,905	-		DZA65_RS20115	0.32	-3.1
4,358,905	-		DZA65_RS20115	0.32	-0.3
4,358,905	-		DZA65_RS20115	0.32	+1.9
4,358,914	+		DZA65_RS20115	0.33	-2.6
4,359,115	+		DZA65_RS20115	0.54	-1.5
4,359,135	+		DZA65_RS20115	0.56	-2.3
4,359,161	+		DZA65_RS20115	0.59	+0.3
4,359,162	-		DZA65_RS20115	0.59	+0.5
4,359,162	-		DZA65_RS20115	0.59	+1.3
4,359,180	+		DZA65_RS20115	0.61	+0.1
4,359,180	+		DZA65_RS20115	0.61	+0.1
4,359,181	-		DZA65_RS20115	0.61	-1.2
4,359,181	-		DZA65_RS20115	0.61	+0.4
4,359,181	-		DZA65_RS20115	0.61	+1.0
4,359,181	-		DZA65_RS20115	0.61	+1.3
4,359,181	-		DZA65_RS20115	0.61	+1.3
4,359,199	+		DZA65_RS20115	0.63	-1.3
4,359,199	+		DZA65_RS20115	0.63	+0.3