Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19380

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,189,264	+		DZA65_RS19370	0.89	-0.6
4,189,264	+		DZA65_RS19370	0.89	-1.6
4,189,264	+		DZA65_RS19370	0.89	+0.7
4,189,264	+		DZA65_RS19370	0.89	-0.8
4,189,264	+		DZA65_RS19370	0.89	-0.8
4,189,264	+		DZA65_RS19370	0.89	-0.1
4,189,264	+		DZA65_RS19370	0.89	+1.0
4,189,265	-		DZA65_RS19370	0.89	+0.6
4,189,265	-		DZA65_RS19370	0.89	+0.7
4,189,265	-		DZA65_RS19370	0.89	-1.1
4,189,265	-		DZA65_RS19370	0.89	+0.2
4,189,265	-		DZA65_RS19370	0.89	-1.9
4,189,265	-		DZA65_RS19370	0.89	+1.2
4,189,265	-		DZA65_RS19370	0.89	+0.2
4,189,265	-		DZA65_RS19370	0.89	-2.8
4,189,265	-		DZA65_RS19370	0.89	-0.9
4,189,306	+				+3.0
4,189,306	+				+1.2
4,189,322	-				-2.7
4,189,346	+				-1.3
4,189,354	+				-1.6
4,189,354	+				-2.7
4,189,354	+				-0.3
4,189,354	+				+2.1
4,189,354	+				+0.2
4,189,354	+				+0.9
4,189,354	+				-2.8
4,189,354	+				-0.3
4,189,355	-				+0.2
4,189,355	-				-1.1
4,189,355	-				+0.2
4,189,355	-				-2.1
4,189,355	-				-1.8
4,189,355	-				-1.8
4,189,355	-				-0.8
4,189,355	-				+1.5
4,189,355	-				-2.5
4,189,355	-				-1.8
4,189,387	+				+2.2
4,189,388	-				+0.7
4,189,388	-				-2.2
4,189,389	+				+1.0
4,189,390	-				+0.7
4,189,390	-				-1.3
4,189,390	-				-1.6
4,189,403	-				+0.2
4,189,404	+				-0.8
4,189,465	-				+1.5
4,189,465	-				-1.8
4,189,465	-				+0.8
4,189,465	-				-1.3
4,189,465	-				-0.8
4,189,465	-				+0.2
4,189,465	-				+0.8
4,189,509	+				+1.0
4,189,509	+				+0.2
4,189,509	+				-2.2
4,189,509	+				-1.3
4,189,509	+				-1.0
4,189,509	+				+1.4
4,189,509	+				+0.2
4,189,510	-				+1.7
4,189,510	-				-1.1
4,189,510	-				-0.3
4,189,510	-				-2.6
4,189,510	-				-1.5
4,189,510	-				-1.0
4,189,542	+				+0.2
4,189,542	+				-1.6
4,189,543	-				-1.8
4,189,675	+		DZA65_RS19375	0.26	+1.7
4,189,676	-		DZA65_RS19375	0.27	+0.5
4,189,676	-		DZA65_RS19375	0.27	-0.2
4,189,753	+		DZA65_RS19375	0.39	+0.0
4,189,753	+		DZA65_RS19375	0.39	-1.3
4,189,854	+		DZA65_RS19375	0.55	+2.3
4,189,854	+		DZA65_RS19375	0.55	-1.8
4,189,855	-		DZA65_RS19375	0.56	+0.1
4,189,893	+		DZA65_RS19375	0.62	+0.5
4,189,894	-		DZA65_RS19375	0.62	-0.8
4,189,918	-		DZA65_RS19375	0.66	-0.8
4,190,121	-				+1.4
4,190,125	+				+1.2
4,190,125	+				-0.8
4,190,125	+				-0.8
4,190,125	+				-1.8
4,190,125	+				-2.9
4,190,126	-				-0.0
4,190,126	-				-2.5
4,190,141	+				-1.3
4,190,141	+				-0.8
4,190,142	-				+0.9
4,190,182	+				-1.3
4,190,183	-				+1.2
4,190,240	-				-1.7
4,190,240	-				-1.3
4,190,334	+				+0.7
4,190,335	-				-2.2
4,190,344	+				-1.8
4,190,344	+				-3.1
4,190,344	+				-1.0
4,190,344	+				-2.8
4,190,344	+				-1.9
4,190,344	+				-1.1
4,190,344	+				-1.9
4,190,344	+				-1.3
4,190,344	+				-1.3
4,190,344	+				-0.8
4,190,344	+				-2.3
4,190,344	+				-3.1
4,190,345	-				-1.6
4,190,345	-				-2.8
4,190,345	-				-1.3
4,190,345	-				-0.8
4,190,345	-				-1.3
4,190,345	-				-0.3
4,190,345	-				-2.6
4,190,345	-				+1.2
4,190,345	-				+0.2
4,190,345	-				-0.8
4,190,345	-				-2.0
4,190,345	-				-1.0
4,190,345	-				-1.3
4,190,345	-				-1.1
4,190,345	-				+0.0
4,190,346	+				-2.3
4,190,346	+				-1.6
4,190,346	+				-1.8
4,190,346	+				-0.8
4,190,346	+				-3.5
4,190,347	-				-2.1
4,190,347	-				-1.9
4,190,347	-				-1.3
4,190,347	-				-2.5
4,190,347	-				+0.4
4,190,347	-				-1.9
4,190,347	-				-4.6
4,190,347	-				-2.5
4,190,347	-				-1.8
4,190,418	+				+0.2
4,190,418	+				-0.9
4,190,418	+				-1.1
4,190,418	+				-1.3
4,190,418	+				-2.3
4,190,418	+				-1.8
4,190,418	+				-1.6
4,190,418	+				-1.1
4,190,418	+				+1.2
4,190,418	+				-1.2
4,190,418	+				+0.8
4,190,418	+				-2.5
4,190,418	+				-2.7
4,190,419	-				-0.8
4,190,419	-				-1.3
4,190,419	-				-0.8
4,190,419	-				-0.3
4,190,419	-				-3.1
4,190,419	-				-1.8
4,190,419	-				-0.6
4,190,419	-				-2.1
4,190,419	-				+0.2
4,190,419	-				-2.8
4,190,419	-				-1.6
4,190,419	-				-1.8
4,190,419	-				-1.9
4,190,419	-				-2.7
4,190,424	+				+0.7
4,190,424	+				-2.2
4,190,425	-				-2.5
4,190,425	-				-1.9
4,190,790	+		DZA65_RS19380	0.17	-0.8
4,190,791	-		DZA65_RS19380	0.17	-2.1
4,190,791	-		DZA65_RS19380	0.17	-1.1
4,190,791	-		DZA65_RS19380	0.17	-0.8
4,190,793	+		DZA65_RS19380	0.18	-2.3
4,190,794	-		DZA65_RS19380	0.18	-0.8
4,190,904	-		DZA65_RS19380	0.21	+0.7
4,190,940	+		DZA65_RS19380	0.22	-2.3
4,191,057	+		DZA65_RS19380	0.26	-1.8
4,191,057	+		DZA65_RS19380	0.26	-2.6
4,191,057	+		DZA65_RS19380	0.26	+0.8
4,191,058	-		DZA65_RS19380	0.26	-2.3
4,191,092	+		DZA65_RS19380	0.27	-1.1
4,191,093	-		DZA65_RS19380	0.27	-1.9
4,191,110	-		DZA65_RS19380	0.27	-0.8
4,191,110	-		DZA65_RS19380	0.27	-3.1
4,191,244	-		DZA65_RS19380	0.32	-3.3
4,191,244	-		DZA65_RS19380	0.32	-2.1
4,191,300	+		DZA65_RS19380	0.33	-1.3
4,191,300	+		DZA65_RS19380	0.33	-1.1
4,191,300	+		DZA65_RS19380	0.33	-3.6
4,191,300	+		DZA65_RS19380	0.33	-2.1
4,191,300	+		DZA65_RS19380	0.33	+0.2
4,191,300	+		DZA65_RS19380	0.33	-2.5
4,191,301	-		DZA65_RS19380	0.33	-3.8
4,191,301	-		DZA65_RS19380	0.33	-1.6
4,191,301	-		DZA65_RS19380	0.33	-3.3
4,191,301	-		DZA65_RS19380	0.33	-3.4
4,191,301	-		DZA65_RS19380	0.33	-1.1
4,191,301	-		DZA65_RS19380	0.33	+0.2
4,191,301	-		DZA65_RS19380	0.33	-2.7
4,191,301	-		DZA65_RS19380	0.33	+1.2
4,191,380	-		DZA65_RS19380	0.36	+0.2
4,191,603	+		DZA65_RS19380	0.43	-1.8
4,191,624	+		DZA65_RS19380	0.43	+0.2
4,191,704	+		DZA65_RS19380	0.46	-0.8
4,191,704	+		DZA65_RS19380	0.46	-1.9
4,191,704	+		DZA65_RS19380	0.46	-1.8
4,191,704	+		DZA65_RS19380	0.46	-1.1
4,191,705	-		DZA65_RS19380	0.46	-1.3
4,191,705	-		DZA65_RS19380	0.46	-1.8
4,191,705	-		DZA65_RS19380	0.46	-1.1
4,191,705	-		DZA65_RS19380	0.46	-2.7
4,191,705	-		DZA65_RS19380	0.46	-2.5
4,191,705	-		DZA65_RS19380	0.46	+0.2
4,191,705	-		DZA65_RS19380	0.46	+1.2
4,191,705	-		DZA65_RS19380	0.46	-0.3
4,191,705	-		DZA65_RS19380	0.46	+0.7
4,191,705	-		DZA65_RS19380	0.46	-2.1
4,191,813	+		DZA65_RS19380	0.49	-2.3
4,191,813	+		DZA65_RS19380	0.49	-0.3
4,191,813	+		DZA65_RS19380	0.49	-0.8
4,191,813	+		DZA65_RS19380	0.49	-0.3
4,191,814	-		DZA65_RS19380	0.49	-0.3
4,191,814	-		DZA65_RS19380	0.49	-1.9
4,191,822	+		DZA65_RS19380	0.49	-4.2
4,191,822	+		DZA65_RS19380	0.49	-0.0
4,191,822	+		DZA65_RS19380	0.49	-1.3
4,191,822	+		DZA65_RS19380	0.49	-0.8
4,191,822	+		DZA65_RS19380	0.49	-1.0
4,191,822	+				-1.8
4,191,822	+		DZA65_RS19380	0.49	-0.3
4,191,822	+		DZA65_RS19380	0.49	-1.1
4,191,822	+		DZA65_RS19380	0.49	-2.2
4,191,822	+		DZA65_RS19380	0.49	-1.1
4,191,822	+		DZA65_RS19380	0.49	-0.3
4,191,822	+		DZA65_RS19380	0.49	-1.3
4,191,822	+		DZA65_RS19380	0.49	-1.9
4,191,823	-		DZA65_RS19380	0.49	-1.9
4,191,823	-		DZA65_RS19380	0.49	-0.6
4,191,823	-		DZA65_RS19380	0.49	-0.3
4,191,823	-		DZA65_RS19380	0.49	-0.1
4,191,823	-		DZA65_RS19380	0.49	-2.9
4,191,823	-		DZA65_RS19380	0.49	-2.8
4,191,823	-		DZA65_RS19380	0.49	+1.7
4,191,823	-		DZA65_RS19380	0.49	-3.5
4,191,823	-		DZA65_RS19380	0.49	+1.2
4,191,823	-		DZA65_RS19380	0.49	-2.4
4,191,828	+		DZA65_RS19380	0.50	-2.1
4,191,828	+		DZA65_RS19380	0.50	-2.3
4,191,828	+		DZA65_RS19380	0.50	-1.4
4,191,829	-		DZA65_RS19380	0.50	-1.6
4,191,829	-		DZA65_RS19380	0.50	-1.3
4,191,829	-		DZA65_RS19380	0.50	-2.8
4,191,829	-		DZA65_RS19380	0.50	-0.3
4,191,829	-		DZA65_RS19380	0.50	-0.8
4,191,829	-		DZA65_RS19380	0.50	-0.8
4,191,862	+		DZA65_RS19380	0.51	-1.2
4,191,876	+		DZA65_RS19380	0.51	-0.3
4,191,877	-		DZA65_RS19380	0.51	-3.3
4,191,877	-		DZA65_RS19380	0.51	-1.6
4,191,895	-		DZA65_RS19380	0.52	-1.9
4,191,895	-		DZA65_RS19380	0.52	-2.7
4,192,140	+		DZA65_RS19380	0.59	-0.3
4,192,140	+		DZA65_RS19380	0.59	-1.1
4,192,147	+		DZA65_RS19380	0.60	-1.8
4,192,147	+		DZA65_RS19380	0.60	-1.2
4,192,148	-		DZA65_RS19380	0.60	-0.3
4,192,366	+		DZA65_RS19380	0.66	-4.3
4,192,366	+		DZA65_RS19380	0.66	-3.3
4,192,367	-		DZA65_RS19380	0.66	-1.1
4,192,367	-		DZA65_RS19380	0.66	-0.9
4,192,392	+		DZA65_RS19380	0.67	-1.3
4,192,392	+		DZA65_RS19380	0.67	-2.1
4,192,393	-		DZA65_RS19380	0.67	-0.5
4,192,462	+		DZA65_RS19380	0.69	-1.1
4,192,462	+		DZA65_RS19380	0.69	-1.8
4,192,462	+		DZA65_RS19380	0.69	-2.4
4,192,462	+		DZA65_RS19380	0.69	-0.8
4,192,462	+		DZA65_RS19380	0.69	-3.1
4,192,463	-		DZA65_RS19380	0.69	-0.8
4,192,463	-		DZA65_RS19380	0.69	-0.9
4,192,464	+		DZA65_RS19380	0.69	-1.1
4,192,464	+		DZA65_RS19380	0.69	+0.2
4,192,464	+		DZA65_RS19380	0.69	-1.9
4,192,671	+		DZA65_RS19380	0.76	+1.7
4,192,671	+		DZA65_RS19380	0.76	-2.2
4,192,671	+		DZA65_RS19380	0.76	-0.3
4,192,671	+		DZA65_RS19380	0.76	-1.1
4,192,671	+		DZA65_RS19380	0.76	-0.8
4,192,672	-		DZA65_RS19380	0.76	-2.5
4,192,672	-		DZA65_RS19380	0.76	-1.9
4,192,672	-		DZA65_RS19380	0.76	-2.1
4,192,735	+		DZA65_RS19380	0.78	-2.8
4,192,736	-		DZA65_RS19380	0.78	-0.8
4,192,807	-		DZA65_RS19380	0.80	-1.3
4,192,877	-		DZA65_RS19380	0.82	-3.1
4,192,905	+		DZA65_RS19380	0.83	-2.3
4,192,905	+		DZA65_RS19380	0.83	-0.3
4,192,951	+		DZA65_RS19380	0.84	-0.8
4,192,952	-		DZA65_RS19380	0.84	-2.2
4,192,954	+		DZA65_RS19380	0.85	-1.8
4,192,955	-		DZA65_RS19380	0.85	-0.3
4,192,955	-		DZA65_RS19380	0.85	-2.1
4,193,003	-		DZA65_RS19380	0.86	-0.8
4,193,003	-		DZA65_RS19380	0.86	-1.1
4,193,257	+				-0.8
4,193,259	+				+1.6
4,193,259	+				-1.5
4,193,259	+				-1.1
4,193,259	+				-4.5
4,193,259	+				-1.1
4,193,259	+				-2.1
4,193,259	+				-1.3
4,193,259	+				-1.3
4,193,259	+				+1.2
4,193,259	+				-1.1
4,193,260	-				-0.8
4,193,260	-				-2.5
4,193,260	-				-2.1
4,193,260	-				-0.8
4,193,260	-				-0.3
4,193,260	-				-2.3
4,193,260	-				+0.2
4,193,260	-				-1.1
4,193,260	-				-1.8
4,193,260	-				-2.6
4,193,260	-				+0.0
4,193,260	-				-1.3
4,193,260	-				-1.8
4,193,263	+				-0.3
4,193,264	-				-2.2
4,193,351	-				-1.4
4,193,370	+				-3.7
4,193,371	-				-2.5
4,193,371	-				-2.7
4,193,432	+				+0.4
4,193,432	+				-0.8
4,193,432	+				-1.8
4,193,433	-				-0.3
4,193,433	-				-2.8
4,193,433	-				-0.6
4,193,433	-				-4.9
4,193,433	-				-1.1
4,193,433	-				-3.3
4,193,440	+				-1.9
4,193,440	+				-1.8
4,193,441	-				-1.6
4,193,441	-				-0.8
4,193,441	-				-2.5
4,193,475	+				-1.1
4,193,476	-				-0.3
4,193,476	-				-1.3
4,193,526	+				-2.2
4,193,526	+				-1.6
4,193,541	+				-0.8
4,193,542	-				+1.2
4,193,554	+				-1.3
4,193,554	+				-0.1
4,193,554	+				-1.1
4,193,554	+				-0.8
4,193,555	-				-0.8
4,193,845	+		DZA65_RS19385	0.27	-3.3
4,193,846	-		DZA65_RS19385	0.27	+0.2
4,193,940	+		DZA65_RS19385	0.35	-4.1
4,193,941	-		DZA65_RS19385	0.35	+0.9
4,193,941	-		DZA65_RS19385	0.35	+0.6
4,194,076	+		DZA65_RS19385	0.47	-1.3
4,194,099	+		DZA65_RS19385	0.49	-3.2
4,194,100	-		DZA65_RS19385	0.49	-0.8
4,194,100	-		DZA65_RS19385	0.49	-0.3
4,194,370	+		DZA65_RS19385	0.72	-1.1
4,194,370	+		DZA65_RS19385	0.72	+0.5
4,194,370	+		DZA65_RS19385	0.72	+3.8
4,194,371	-		DZA65_RS19385	0.72	-2.2
4,194,371	-		DZA65_RS19385	0.72	-1.1
4,194,371	-		DZA65_RS19385	0.72	-0.9
4,194,371	-		DZA65_RS19385	0.72	+0.1
4,194,371	-		DZA65_RS19385	0.72	-2.5
4,194,371	-		DZA65_RS19385	0.72	-2.8
4,194,371	-		DZA65_RS19385	0.72	-2.6
4,194,371	-		DZA65_RS19385	0.72	-1.9
4,194,387	+		DZA65_RS19385	0.74	-2.8
4,194,387	+		DZA65_RS19385	0.74	-1.3
4,194,414	+		DZA65_RS19385	0.76	-2.3
4,194,415	-		DZA65_RS19385	0.76	+0.2
4,194,415	-		DZA65_RS19385	0.76	-0.8
4,194,435	-		DZA65_RS19385	0.78	-2.6
4,194,435	-		DZA65_RS19385	0.78	-0.8
4,194,435	-		DZA65_RS19385	0.78	+0.2