Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16600

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,580,928	+		DZA65_RS16585	0.72	-0.5
3,580,928	+		DZA65_RS16585	0.72	-0.9
3,580,929	-		DZA65_RS16585	0.72	+0.1
3,580,929	-		DZA65_RS16585	0.72	-1.5
3,581,040	+		DZA65_RS16585	0.88	-2.2
3,581,041	-		DZA65_RS16585	0.88	+1.8
3,581,041	-		DZA65_RS16585	0.88	+0.8
3,581,091	-				+0.1
3,581,096	+				-1.7
3,581,096	+				-0.5
3,581,096	+				-0.9
3,581,096	+				+1.1
3,581,096	+				+1.3
3,581,096	+				-3.1
3,581,096	+				+0.7
3,581,097	-				-1.2
3,581,097	-				+2.1
3,581,097	-				-0.7
3,581,097	-				-2.7
3,581,097	-				+1.6
3,581,097	-				-2.4
3,581,098	+				+3.5
3,581,099	-				+0.5
3,581,099	-				-1.2
3,581,110	+				-0.3
3,581,110	+				-0.7
3,581,110	+				-0.5
3,581,111	-				+1.4
3,581,111	-				-0.5
3,581,111	-				+0.7
3,581,111	-				+0.6
3,581,111	-				+1.4
3,581,111	-				+0.7
3,581,126	+				-1.9
3,581,126	+				-1.7
3,581,127	-				+0.3
3,581,127	-				-1.9
3,581,128	+				-0.5
3,581,129	-				-0.9
3,581,138	+				+0.8
3,581,139	-				+0.7
3,581,139	-				-0.8
3,581,168	-				+1.3
3,581,205	-		DZA65_RS16590	0.15	+0.1
3,581,205	-		DZA65_RS16590	0.15	-1.2
3,581,205	-		DZA65_RS16590	0.15	-0.9
3,581,227	+		DZA65_RS16590	0.19	-1.3
3,581,227	+				-2.1
3,581,227	+		DZA65_RS16590	0.19	-0.2
3,581,227	+		DZA65_RS16590	0.19	+0.5
3,581,227	+		DZA65_RS16590	0.19	-2.2
3,581,227	+		DZA65_RS16590	0.19	+0.3
3,581,227	+		DZA65_RS16590	0.19	-0.9
3,581,228	-		DZA65_RS16590	0.19	+0.1
3,581,228	-		DZA65_RS16590	0.19	+1.7
3,581,228	-		DZA65_RS16590	0.19	+1.3
3,581,228	-		DZA65_RS16590	0.19	+0.9
3,581,271	+		DZA65_RS16590	0.26	-0.9
3,581,271	+		DZA65_RS16590	0.26	-2.1
3,581,271	+		DZA65_RS16590	0.26	+2.1
3,581,272	-		DZA65_RS16590	0.26	+1.7
3,581,272	-		DZA65_RS16590	0.26	-0.9
3,581,371	+		DZA65_RS16590	0.43	-0.2
3,581,371	+		DZA65_RS16590	0.43	-0.5
3,581,371	+		DZA65_RS16590	0.43	-1.2
3,581,372	-		DZA65_RS16590	0.43	-0.1
3,581,372	-		DZA65_RS16590	0.43	-1.2
3,581,372	-		DZA65_RS16590	0.43	-1.2
3,581,372	-		DZA65_RS16590	0.43	+0.5
3,581,372	-		DZA65_RS16590	0.43	-0.6
3,581,372	-		DZA65_RS16590	0.43	+2.4
3,581,372	-		DZA65_RS16590	0.43	+3.5
3,581,493	+		DZA65_RS16590	0.63	-1.2
3,581,542	+		DZA65_RS16590	0.72	+0.1
3,581,542	+		DZA65_RS16590	0.72	+0.1
3,581,542	+		DZA65_RS16590	0.72	-0.1
3,581,542	+		DZA65_RS16590	0.72	-2.1
3,581,542	+		DZA65_RS16590	0.72	-1.2
3,581,543	-		DZA65_RS16590	0.72	-1.2
3,581,543	-		DZA65_RS16590	0.72	+0.5
3,581,543	-		DZA65_RS16590	0.72	-0.3
3,581,543	-		DZA65_RS16590	0.72	+0.1
3,581,543	-		DZA65_RS16590	0.72	-1.7
3,581,543	-		DZA65_RS16590	0.72	+1.7
3,581,543	-		DZA65_RS16590	0.72	-1.0
3,581,589	+		DZA65_RS16590	0.80	-0.9
3,581,589	+		DZA65_RS16590	0.80	-0.2
3,581,589	+		DZA65_RS16590	0.80	-2.1
3,581,590	-		DZA65_RS16590	0.80	+0.6
3,581,590	-		DZA65_RS16590	0.80	-0.8
3,581,628	+		DZA65_RS16590	0.86	-0.1
3,581,628	+		DZA65_RS16590	0.86	-2.7
3,581,628	+		DZA65_RS16590	0.86	-0.1
3,581,629	-		DZA65_RS16590	0.86	-0.2
3,581,629	-		DZA65_RS16590	0.86	-1.2
3,581,636	-		DZA65_RS16590	0.87	+0.1
3,581,693	-				-1.5
3,581,693	-				+0.1
3,581,718	-				+1.8
3,581,725	+				+0.8
3,581,726	-				-1.0
3,581,844	+		DZA65_RS16595	0.67	-1.9
3,581,844	+		DZA65_RS16595	0.67	+0.1
3,581,845	-		DZA65_RS16595	0.68	+1.7
3,581,845	-		DZA65_RS16595	0.68	-0.5
3,581,845	-		DZA65_RS16595	0.68	+0.1
3,581,865	+		DZA65_RS16595	0.77	-0.8
3,581,865	+		DZA65_RS16595	0.77	-1.9
3,581,865	+		DZA65_RS16595	0.77	+0.6
3,581,865	+		DZA65_RS16595	0.77	-1.2
3,581,865	+		DZA65_RS16595	0.77	-0.5
3,581,866	-		DZA65_RS16595	0.78	-0.5
3,581,866	-		DZA65_RS16595	0.78	-1.2
3,581,866	-		DZA65_RS16595	0.78	+0.1
3,581,866	-		DZA65_RS16595	0.78	-1.0
3,581,866	-				-2.2
3,581,866	-		DZA65_RS16595	0.78	-0.5
3,581,866	-		DZA65_RS16595	0.78	-1.5
3,581,866	-		DZA65_RS16595	0.78	+0.1
3,581,866	-		DZA65_RS16595	0.78	-1.4
3,581,895	+				+0.1
3,581,895	+				-0.1
3,581,895	+				-1.9
3,581,895	+				-2.5
3,581,896	-				-2.5
3,581,896	-				+2.8
3,581,896	-				+0.7
3,581,896	-				+2.9
3,581,896	-				+0.4
3,581,902	-				-1.4
3,581,902	-				+0.1
3,581,974	-				+0.5
3,581,974	-				+1.1
3,582,004	+				+0.5
3,582,004	+				+0.4
3,582,004	+				-1.9
3,582,004	+				-2.2
3,582,004	+				+1.0
3,582,004	+				-0.9
3,582,004	+				-1.0
3,582,004	+				-1.2
3,582,005	-				-1.6
3,582,005	-				-2.7
3,582,005	-				-0.7
3,582,005	-				-0.2
3,582,005	-				-2.2
3,582,005	-				+2.1
3,582,005	-				+2.6
3,582,027	+				+0.1
3,582,027	+				+0.1
3,582,027	+				-1.5
3,582,027	+				-1.0
3,582,027	+				-0.5
3,582,027	+				+0.7
3,582,027	+				+3.1
3,582,028	-				+0.5
3,582,028	-				-1.9
3,582,028	-				+1.5
3,582,028	-				+1.8
3,582,028	-				-0.7
3,582,028	-				-0.3
3,582,028	-				+0.1
3,582,028	-				+1.3
3,582,046	-		DZA65_RS16600	0.10	+0.8
3,582,060	+		DZA65_RS16600	0.12	+3.1
3,582,060	+		DZA65_RS16600	0.12	-0.5
3,582,061	-		DZA65_RS16600	0.12	-1.5
3,582,061	-		DZA65_RS16600	0.12	-1.7
3,582,187	+		DZA65_RS16600	0.22	-0.1
3,582,187	+		DZA65_RS16600	0.22	-0.7
3,582,187	+		DZA65_RS16600	0.22	+1.0
3,582,188	-		DZA65_RS16600	0.22	-0.5
3,582,188	-		DZA65_RS16600	0.22	+2.7
3,582,188	-		DZA65_RS16600	0.22	+0.9
3,582,189	+		DZA65_RS16600	0.22	+0.1
3,582,189	+		DZA65_RS16600	0.22	+0.7
3,582,189	+		DZA65_RS16600	0.22	-1.8
3,582,190	-		DZA65_RS16600	0.22	+0.0
3,582,190	-		DZA65_RS16600	0.22	+1.1
3,582,190	-		DZA65_RS16600	0.22	+0.4
3,582,190	-		DZA65_RS16600	0.22	-1.2
3,582,190	-		DZA65_RS16600	0.22	-1.9
3,582,190	-		DZA65_RS16600	0.22	-1.2
3,582,190	-		DZA65_RS16600	0.22	+1.5
3,582,251	+		DZA65_RS16600	0.27	-0.9
3,582,271	-		DZA65_RS16600	0.28	+1.0
3,582,288	+		DZA65_RS16600	0.30	+0.9
3,582,351	+		DZA65_RS16600	0.35	+3.0
3,582,351	+		DZA65_RS16600	0.35	+0.1
3,582,351	+		DZA65_RS16600	0.35	+1.1
3,582,351	+		DZA65_RS16600	0.35	+0.1
3,582,351	+		DZA65_RS16600	0.35	+0.6
3,582,351	+		DZA65_RS16600	0.35	-0.1
3,582,351	+		DZA65_RS16600	0.35	+1.5
3,582,352	-		DZA65_RS16600	0.35	+1.5
3,582,352	-				-0.9
3,582,352	-		DZA65_RS16600	0.35	+0.2
3,582,352	-		DZA65_RS16600	0.35	+2.1
3,582,352	-		DZA65_RS16600	0.35	-0.9
3,582,352	-		DZA65_RS16600	0.35	-0.5
3,582,355	+		DZA65_RS16600	0.35	-0.6
3,582,355	+		DZA65_RS16600	0.35	+0.1
3,582,355	+		DZA65_RS16600	0.35	-0.5
3,582,355	+		DZA65_RS16600	0.35	+0.1
3,582,356	-		DZA65_RS16600	0.35	+2.1
3,582,392	+		DZA65_RS16600	0.38	+1.2
3,582,392	+		DZA65_RS16600	0.38	-1.5
3,582,392	+		DZA65_RS16600	0.38	+1.2
3,582,392	+		DZA65_RS16600	0.38	-1.1
3,582,392	+		DZA65_RS16600	0.38	+1.5
3,582,392	+		DZA65_RS16600	0.38	+1.6
3,582,392	+		DZA65_RS16600	0.38	-0.9
3,582,393	-		DZA65_RS16600	0.38	+2.1
3,582,393	-		DZA65_RS16600	0.38	-0.9
3,582,393	-		DZA65_RS16600	0.38	+1.1
3,582,393	-		DZA65_RS16600	0.38	+0.5
3,582,393	-		DZA65_RS16600	0.38	+1.2
3,582,393	-		DZA65_RS16600	0.38	+1.1
3,582,433	+		DZA65_RS16600	0.41	-1.7
3,582,434	-		DZA65_RS16600	0.41	-1.2
3,582,434	-		DZA65_RS16600	0.41	+1.3
3,582,454	+		DZA65_RS16600	0.43	+2.6
3,582,454	+		DZA65_RS16600	0.43	-0.9
3,582,454	+		DZA65_RS16600	0.43	-1.2
3,582,455	-		DZA65_RS16600	0.43	+0.4
3,582,455	-		DZA65_RS16600	0.43	-1.7
3,582,458	+				-0.9
3,582,458	+		DZA65_RS16600	0.43	+3.1
3,582,458	+		DZA65_RS16600	0.43	-1.5
3,582,458	+		DZA65_RS16600	0.43	+0.5
3,582,458	+		DZA65_RS16600	0.43	-0.5
3,582,458	+		DZA65_RS16600	0.43	+1.9
3,582,459	-		DZA65_RS16600	0.43	+0.2
3,582,459	-		DZA65_RS16600	0.43	-1.5
3,582,481	+		DZA65_RS16600	0.45	+0.9
3,582,482	-		DZA65_RS16600	0.45	+0.4
3,582,499	+		DZA65_RS16600	0.47	-0.9
3,582,499	+		DZA65_RS16600	0.47	+0.6
3,582,500	-		DZA65_RS16600	0.47	+0.4
3,582,527	-		DZA65_RS16600	0.49	-1.7
3,582,538	+		DZA65_RS16600	0.50	+0.2
3,582,538	+		DZA65_RS16600	0.50	-0.9
3,582,538	+		DZA65_RS16600	0.50	-1.2
3,582,538	+		DZA65_RS16600	0.50	-0.9
3,582,539	-		DZA65_RS16600	0.50	+1.1
3,582,539	-		DZA65_RS16600	0.50	-0.3
3,582,539	-		DZA65_RS16600	0.50	+0.9
3,582,539	-		DZA65_RS16600	0.50	-1.2
3,582,539	-		DZA65_RS16600	0.50	-1.1
3,582,542	+		DZA65_RS16600	0.50	+0.2
3,582,542	+		DZA65_RS16600	0.50	-0.4
3,582,542	+		DZA65_RS16600	0.50	-0.6
3,582,542	+		DZA65_RS16600	0.50	+3.4
3,582,542	+		DZA65_RS16600	0.50	-1.0
3,582,542	+		DZA65_RS16600	0.50	-2.4
3,582,542	+		DZA65_RS16600	0.50	+0.8
3,582,542	+		DZA65_RS16600	0.50	+1.1
3,582,542	+		DZA65_RS16600	0.50	+2.1
3,582,542	+		DZA65_RS16600	0.50	+0.5
3,582,543	-		DZA65_RS16600	0.50	-0.9
3,582,543	-		DZA65_RS16600	0.50	-1.7
3,582,543	-		DZA65_RS16600	0.50	-1.1
3,582,543	-		DZA65_RS16600	0.50	+0.9
3,582,543	-		DZA65_RS16600	0.50	-2.6
3,582,543	-		DZA65_RS16600	0.50	+1.8
3,582,543	-		DZA65_RS16600	0.50	-1.5
3,582,623	+		DZA65_RS16600	0.56	-1.6
3,582,623	+		DZA65_RS16600	0.56	-0.7
3,582,624	-				-1.7
3,582,624	-		DZA65_RS16600	0.57	-0.9
3,582,624	-		DZA65_RS16600	0.57	-1.9
3,582,654	+		DZA65_RS16600	0.59	+1.1
3,582,654	+		DZA65_RS16600	0.59	+0.4
3,582,656	+		DZA65_RS16600	0.59	+2.8
3,582,656	+		DZA65_RS16600	0.59	+2.4
3,582,656	+		DZA65_RS16600	0.59	+0.9
3,582,656	+		DZA65_RS16600	0.59	-1.2
3,582,656	+		DZA65_RS16600	0.59	+0.5
3,582,657	-		DZA65_RS16600	0.59	-1.7
3,582,657	-		DZA65_RS16600	0.59	+0.7
3,582,657	-		DZA65_RS16600	0.59	-0.1
3,582,657	-		DZA65_RS16600	0.59	+1.6
3,582,657	-		DZA65_RS16600	0.59	+0.9
3,582,657	-		DZA65_RS16600	0.59	+2.1
3,582,657	-		DZA65_RS16600	0.59	-0.1
3,582,657	-		DZA65_RS16600	0.59	+2.3
3,582,668	+		DZA65_RS16600	0.60	-0.6
3,582,668	+		DZA65_RS16600	0.60	+1.1
3,582,669	-		DZA65_RS16600	0.60	-1.2
3,582,676	+		DZA65_RS16600	0.61	-1.9
3,582,676	+		DZA65_RS16600	0.61	+0.7
3,582,677	-		DZA65_RS16600	0.61	+1.6
3,582,785	+		DZA65_RS16600	0.69	-1.2
3,582,785	+				+1.1
3,582,785	+		DZA65_RS16600	0.69	-2.1
3,582,785	+		DZA65_RS16600	0.69	+1.1
3,582,785	+		DZA65_RS16600	0.69	+0.1
3,582,785	+		DZA65_RS16600	0.69	-1.9
3,582,785	+		DZA65_RS16600	0.69	-1.6
3,582,785	+		DZA65_RS16600	0.69	-1.5
3,582,785	+		DZA65_RS16600	0.69	-0.9
3,582,785	+		DZA65_RS16600	0.69	+1.1
3,582,785	+		DZA65_RS16600	0.69	+0.9
3,582,785	+		DZA65_RS16600	0.69	-0.2
3,582,785	+		DZA65_RS16600	0.69	-0.6
3,582,785	+		DZA65_RS16600	0.69	-2.6
3,582,785	+		DZA65_RS16600	0.69	+0.2
3,582,785	+		DZA65_RS16600	0.69	+1.1
3,582,786	-		DZA65_RS16600	0.69	-0.5
3,582,786	-		DZA65_RS16600	0.69	+0.0
3,582,786	-		DZA65_RS16600	0.69	+2.9
3,582,786	-		DZA65_RS16600	0.69	-0.5
3,582,786	-		DZA65_RS16600	0.69	-0.7
3,582,786	-		DZA65_RS16600	0.69	-1.5
3,582,787	+		DZA65_RS16600	0.70	-1.4
3,582,788	-		DZA65_RS16600	0.70	-2.1
3,582,788	-		DZA65_RS16600	0.70	+0.5
3,582,801	-		DZA65_RS16600	0.71	+0.5
3,582,841	+		DZA65_RS16600	0.74	-0.7
3,582,841	+		DZA65_RS16600	0.74	-0.3
3,582,841	+		DZA65_RS16600	0.74	-0.5
3,582,841	+		DZA65_RS16600	0.74	-1.5
3,582,842	-		DZA65_RS16600	0.74	+1.1
3,582,842	-		DZA65_RS16600	0.74	-0.5
3,582,842	-		DZA65_RS16600	0.74	-1.9
3,582,842	-		DZA65_RS16600	0.74	-1.5
3,582,842	-		DZA65_RS16600	0.74	+2.8
3,582,842	-		DZA65_RS16600	0.74	+1.0
3,582,852	+		DZA65_RS16600	0.75	+0.0
3,582,852	+		DZA65_RS16600	0.75	-1.5
3,582,852	+		DZA65_RS16600	0.75	-0.3
3,582,853	-		DZA65_RS16600	0.75	-0.8
3,582,853	-		DZA65_RS16600	0.75	-0.3
3,582,867	-		DZA65_RS16600	0.76	+0.3
3,582,898	+		DZA65_RS16600	0.78	+1.1
3,582,899	-		DZA65_RS16600	0.78	-2.1
3,582,901	+		DZA65_RS16600	0.79	-0.2
3,583,048	-				-1.7
3,583,054	-				-0.9
3,583,093	-				+0.8
3,583,093	-				-0.7
3,583,093	-				-1.2
3,583,119	+				+0.0
3,583,120	-				-0.5
3,583,120	-				+0.4
3,583,120	-				+0.5
3,583,120	-				-0.5
3,583,121	+				-1.7
3,583,121	+				+0.2
3,583,121	+				+0.4
3,583,121	+				-1.4
3,583,121	+				+0.0
3,583,194	-				-0.2
3,583,196	-				-0.8
3,583,210	-				+0.5
3,583,211	+				+1.5
3,583,212	-				+0.6
3,583,257	+				-0.9
3,583,257	+				+0.1
3,583,329	-				+0.1
3,583,332	+				-3.1
3,583,332	+				-1.9
3,583,333	-				-2.0
3,583,342	+				-2.6
3,583,349	+				+3.3
3,583,355	+				-1.1
3,583,629	-		DZA65_RS16605	0.17	+1.1
3,583,753	+		DZA65_RS16605	0.25	+0.1
3,583,754	-		DZA65_RS16605	0.25	+0.1