Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13535

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,904,835	+		DZA65_RS13530	0.79	-3.3
2,904,835	+		DZA65_RS13530	0.79	-2.3
2,904,835	+		DZA65_RS13530	0.79	-0.9
2,904,835	+		DZA65_RS13530	0.79	+0.7
2,904,835	+		DZA65_RS13530	0.79	-3.1
2,904,835	+		DZA65_RS13530	0.79	-1.8
2,904,836	-		DZA65_RS13530	0.79	+0.6
2,904,836	-		DZA65_RS13530	0.79	-1.2
2,904,841	+		DZA65_RS13530	0.79	-1.2
2,904,841	+		DZA65_RS13530	0.79	-0.6
2,904,842	-		DZA65_RS13530	0.79	-1.3
2,904,842	-		DZA65_RS13530	0.79	-2.0
2,904,842	-		DZA65_RS13530	0.79	-1.0
2,904,849	+		DZA65_RS13530	0.80	+0.7
2,905,027	+		DZA65_RS13530	0.85	-0.0
2,905,027	+		DZA65_RS13530	0.85	-1.8
2,905,027	+		DZA65_RS13530	0.85	-0.6
2,905,027	+		DZA65_RS13530	0.85	-1.0
2,905,027	+		DZA65_RS13530	0.85	-0.2
2,905,027	+		DZA65_RS13530	0.85	-1.0
2,905,027	+		DZA65_RS13530	0.85	-1.3
2,905,027	+		DZA65_RS13530	0.85	-1.3
2,905,028	-		DZA65_RS13530	0.85	-0.3
2,905,028	-		DZA65_RS13530	0.85	-0.8
2,905,183	+		DZA65_RS13530	0.89	-1.6
2,905,184	-		DZA65_RS13530	0.89	-0.5
2,905,380	+				-2.3
2,905,381	-				-1.2
2,905,381	-				-1.0
2,905,435	+				-0.6
2,905,436	-				-0.9
2,905,436	-				-0.2
2,905,517	+				-1.0
2,905,539	+				+1.4
2,905,539	+				+0.0
2,905,539	+				+0.5
2,905,539	+				+1.0
2,905,539	+				+0.6
2,905,539	+				+1.0
2,905,539	+				+0.6
2,905,540	-				-2.0
2,905,540	-				+0.7
2,905,540	-				-1.0
2,905,540	-				-1.8
2,905,540	-				+0.0
2,905,540	-				+0.5
2,905,540	-				+0.2
2,905,540	-				+1.0
2,905,540	-				-2.7
2,905,540	-				-2.3
2,905,540	-				+1.5
2,905,556	+				+2.4
2,905,557	-				-1.6
2,905,570	-				-1.0
2,905,570	-				-0.8
2,905,588	+				-0.3
2,905,603	-				+0.0
2,905,612	+				+1.4
2,905,612	+				+0.7
2,905,612	+				+0.4
2,905,613	-				-2.2
2,905,614	+				+1.3
2,905,614	+				+0.5
2,905,615	-				+0.4
2,905,615	-				+0.0
2,905,615	-				+0.0
2,905,615	-				+0.1
2,905,616	+				-1.8
2,905,616	+				+2.0
2,905,616	+				-2.2
2,905,616	+				-1.6
2,905,617	-				-1.5
2,905,624	+				+0.3
2,905,682	+				+0.6
2,905,683	-				+0.0
2,905,684	+				-2.2
2,905,685	-				+1.0
2,905,693	+				+2.0
2,905,693	+				-1.6
2,905,693	+				+3.8
2,905,693	+				+0.4
2,905,702	+				+1.2
2,905,702	+				-0.5
2,905,702	+				+0.3
2,905,703	-				+0.8
2,905,703	-				-0.6
2,905,703	-				-1.3
2,905,703	-				-2.2
2,905,705	-				+0.4
2,905,705	-				-0.8
2,905,724	+				-1.6
2,905,736	+				-2.0
2,905,742	-				+1.0
2,905,783	+				-2.2
2,905,794	+				-0.2
2,905,795	-				+0.0
2,905,797	+				-0.3
2,905,811	+				+0.3
2,905,811	+				-1.3
2,905,812	-				+1.5
2,905,812	-				-1.8
2,905,812	-				-0.6
2,905,812	-				-2.3
2,905,812	-				-0.6
2,905,818	-				-0.4
2,905,831	-				-0.6
2,905,832	+				-1.6
2,905,832	+				-2.0
2,905,832	+				-0.6
2,905,832	+				-0.5
2,905,832	+				-1.3
2,905,833	-				-0.8
2,905,833	-				+1.6
2,905,833	-				-1.0
2,905,859	+				+0.6
2,905,904	+		DZA65_RS13535	0.11	-0.6
2,905,955	+		DZA65_RS13535	0.15	+0.2
2,905,956	-		DZA65_RS13535	0.15	-2.2
2,905,956	-		DZA65_RS13535	0.15	-1.0
2,906,016	+		DZA65_RS13535	0.19	+0.2
2,906,016	+		DZA65_RS13535	0.19	-2.3
2,906,016	+		DZA65_RS13535	0.19	-0.5
2,906,016	+		DZA65_RS13535	0.19	-1.3
2,906,016	+		DZA65_RS13535	0.19	-1.6
2,906,016	+		DZA65_RS13535	0.19	-0.3
2,906,016	+		DZA65_RS13535	0.19	+0.0
2,906,016	+		DZA65_RS13535	0.19	-1.0
2,906,017	-		DZA65_RS13535	0.19	+0.0
2,906,017	-		DZA65_RS13535	0.19	-0.5
2,906,017	-		DZA65_RS13535	0.19	-0.2
2,906,017	-		DZA65_RS13535	0.19	+1.4
2,906,031	+		DZA65_RS13535	0.20	+0.7
2,906,031	+		DZA65_RS13535	0.20	+1.0
2,906,032	-		DZA65_RS13535	0.20	+1.4
2,906,072	+		DZA65_RS13535	0.23	-2.0
2,906,129	+		DZA65_RS13535	0.26	-0.6
2,906,129	+		DZA65_RS13535	0.26	-0.6
2,906,129	+		DZA65_RS13535	0.26	-1.0
2,906,129	+		DZA65_RS13535	0.26	-2.2
2,906,129	+		DZA65_RS13535	0.26	+0.0
2,906,129	+		DZA65_RS13535	0.26	+0.3
2,906,129	+		DZA65_RS13535	0.26	-1.8
2,906,129	+		DZA65_RS13535	0.26	-1.4
2,906,129	+		DZA65_RS13535	0.26	+2.0
2,906,130	-		DZA65_RS13535	0.26	-2.0
2,906,130	-		DZA65_RS13535	0.26	+2.6
2,906,130	-		DZA65_RS13535	0.26	-1.4
2,906,130	-		DZA65_RS13535	0.26	-0.7
2,906,130	-		DZA65_RS13535	0.26	+1.2
2,906,130	-		DZA65_RS13535	0.26	-1.0
2,906,130	-		DZA65_RS13535	0.26	-2.1
2,906,130	-		DZA65_RS13535	0.26	+0.0
2,906,130	-		DZA65_RS13535	0.26	-0.6
2,906,130	-		DZA65_RS13535	0.26	-1.3
2,906,133	+		DZA65_RS13535	0.27	-1.8
2,906,133	+		DZA65_RS13535	0.27	+0.4
2,906,133	+		DZA65_RS13535	0.27	-0.3
2,906,133	+		DZA65_RS13535	0.27	+3.0
2,906,133	+		DZA65_RS13535	0.27	-1.0
2,906,133	+		DZA65_RS13535	0.27	-1.6
2,906,134	-		DZA65_RS13535	0.27	-2.5
2,906,134	-		DZA65_RS13535	0.27	+0.0
2,906,134	-		DZA65_RS13535	0.27	+1.4
2,906,134	-		DZA65_RS13535	0.27	+0.7
2,906,134	-		DZA65_RS13535	0.27	+1.0
2,906,173	+		DZA65_RS13535	0.29	-1.6
2,906,174	-		DZA65_RS13535	0.29	-2.0
2,906,192	+		DZA65_RS13535	0.31	+0.7
2,906,230	-		DZA65_RS13535	0.33	+1.7
2,906,230	-		DZA65_RS13535	0.33	-0.3
2,906,237	-		DZA65_RS13535	0.34	+0.2
2,906,267	+		DZA65_RS13535	0.36	-0.1
2,906,267	+		DZA65_RS13535	0.36	+0.2
2,906,267	+		DZA65_RS13535	0.36	+0.6
2,906,267	+		DZA65_RS13535	0.36	-1.4
2,906,268	-		DZA65_RS13535	0.36	-0.2
2,906,272	+		DZA65_RS13535	0.36	-1.4
2,906,272	+		DZA65_RS13535	0.36	-0.5
2,906,300	+		DZA65_RS13535	0.38	-1.0
2,906,309	+		DZA65_RS13535	0.38	+1.3
2,906,309	+		DZA65_RS13535	0.38	-1.3
2,906,310	-		DZA65_RS13535	0.38	+0.0
2,906,328	+		DZA65_RS13535	0.40	-2.6
2,906,364	+		DZA65_RS13535	0.42	-2.3
2,906,448	+		DZA65_RS13535	0.48	-1.6
2,906,449	-		DZA65_RS13535	0.48	+0.4
2,906,450	+		DZA65_RS13535	0.48	-2.5
2,906,450	+		DZA65_RS13535	0.48	+0.2
2,906,450	+		DZA65_RS13535	0.48	+3.3
2,906,450	+		DZA65_RS13535	0.48	-3.2
2,906,450	+		DZA65_RS13535	0.48	-1.6
2,906,450	+		DZA65_RS13535	0.48	-1.3
2,906,450	+		DZA65_RS13535	0.48	+1.0
2,906,451	-		DZA65_RS13535	0.48	-2.0
2,906,451	-		DZA65_RS13535	0.48	+0.3
2,906,451	-		DZA65_RS13535	0.48	+2.0
2,906,515	+		DZA65_RS13535	0.52	-1.6
2,906,515	+		DZA65_RS13535	0.52	+0.0
2,906,516	-		DZA65_RS13535	0.52	-2.3
2,906,516	-		DZA65_RS13535	0.52	-0.6
2,906,516	-		DZA65_RS13535	0.52	+1.0
2,906,516	-		DZA65_RS13535	0.52	-1.3
2,906,523	+		DZA65_RS13535	0.53	+1.3
2,906,526	+		DZA65_RS13535	0.53	-1.3
2,906,527	-		DZA65_RS13535	0.53	+0.0
2,906,538	-		DZA65_RS13535	0.54	+0.0
2,906,701	+		DZA65_RS13535	0.64	+0.7
2,906,701	+		DZA65_RS13535	0.64	-3.6
2,906,702	-		DZA65_RS13535	0.64	+0.0
2,906,750	+		DZA65_RS13535	0.68	-0.6
2,906,751	-				-0.6
2,906,751	-		DZA65_RS13535	0.68	-1.3
2,906,874	-		DZA65_RS13535	0.76	-1.5
2,906,921	-		DZA65_RS13535	0.79	+0.1
2,906,952	+		DZA65_RS13535	0.81	+2.0
2,907,001	+		DZA65_RS13535	0.84	+1.9
2,907,001	+		DZA65_RS13535	0.84	-1.3
2,907,001	+		DZA65_RS13535	0.84	+0.3
2,907,002	-		DZA65_RS13535	0.84	-0.6
2,907,002	-		DZA65_RS13535	0.84	-2.0
2,907,116	-				-1.3
2,907,174	+				+1.0
2,907,174	+				+1.5
2,907,174	+				+0.0
2,907,174	+				-2.0
2,907,175	-				-0.3
2,907,253	+				-0.3
2,907,265	-				-1.1
2,907,280	+				+0.3
2,907,281	-				-1.2
2,907,321	-				-0.2
2,907,335	+				-0.2
2,907,336	-				-0.4
2,907,336	-				+0.8
2,907,362	+				-2.5
2,907,362	+				+0.0
2,907,363	-				-0.1
2,907,368	-				+0.2
2,907,440	+				-2.0
2,907,440	+				+1.3
2,907,440	+				-1.5
2,907,441	-				-1.3
2,907,441	-				-0.2
2,907,537	+		DZA65_RS13540	0.14	+1.7
2,907,537	+		DZA65_RS13540	0.14	+0.0
2,907,538	-		DZA65_RS13540	0.14	+1.5
2,907,538	-		DZA65_RS13540	0.14	-1.6
2,907,538	-		DZA65_RS13540	0.14	+2.4
2,907,538	-		DZA65_RS13540	0.14	+0.7
2,907,538	-		DZA65_RS13540	0.14	+0.3
2,907,575	-		DZA65_RS13540	0.17	+1.0
2,907,626	+		DZA65_RS13540	0.21	-1.0
2,907,626	+		DZA65_RS13540	0.21	-2.3
2,907,626	+		DZA65_RS13540	0.21	-0.3
2,907,626	+		DZA65_RS13540	0.21	+1.0
2,907,626	+		DZA65_RS13540	0.21	-2.0
2,907,626	+		DZA65_RS13540	0.21	-2.0
2,907,626	+		DZA65_RS13540	0.21	+1.0
2,907,626	+		DZA65_RS13540	0.21	-0.8
2,907,627	-		DZA65_RS13540	0.21	-1.3
2,907,627	-		DZA65_RS13540	0.21	-2.2
2,907,627	-		DZA65_RS13540	0.21	-0.6
2,907,627	-		DZA65_RS13540	0.21	+2.7
2,907,627	-		DZA65_RS13540	0.21	+1.3
2,907,627	-		DZA65_RS13540	0.21	-1.8
2,907,714	+		DZA65_RS13540	0.27	-2.9
2,907,715	-		DZA65_RS13540	0.27	-1.3
2,907,715	-		DZA65_RS13540	0.27	+0.0
2,907,733	+		DZA65_RS13540	0.29	-2.3
2,907,734	-		DZA65_RS13540	0.29	-0.6