Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13130

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,813,910	+		DZA65_RS13120	0.80	-1.1
2,813,910	+		DZA65_RS13120	0.80	-1.1
2,813,911	-		DZA65_RS13120	0.80	-0.1
2,813,911	-		DZA65_RS13120	0.80	+1.8
2,813,911	-		DZA65_RS13120	0.80	-1.5
2,814,043	-				-0.4
2,814,043	-				+1.3
2,814,043	-				-0.2
2,814,043	-				-1.4
2,814,074	+				-0.6
2,814,075	-				+0.1
2,814,085	-				-0.7
2,814,102	+				+0.9
2,814,142	+				+2.5
2,814,155	+				+0.6
2,814,156	-				+3.7
2,814,230	+		DZA65_RS13125	0.22	-1.9
2,814,230	+		DZA65_RS13125	0.22	-1.1
2,814,231	-		DZA65_RS13125	0.22	-0.5
2,814,308	+		DZA65_RS13125	0.44	+0.3
2,814,349	-		DZA65_RS13125	0.56	-1.1
2,814,349	-		DZA65_RS13125	0.56	+1.9
2,814,443	+		DZA65_RS13125	0.82	+0.9
2,814,443	+		DZA65_RS13125	0.82	-1.4
2,814,444	-		DZA65_RS13125	0.83	-1.7
2,814,444	-		DZA65_RS13125	0.83	-0.1
2,814,444	-		DZA65_RS13125	0.83	-0.0
2,814,444	-		DZA65_RS13125	0.83	-0.7
2,814,508	-				-1.9
2,814,508	-				-0.1
2,814,598	-				+1.0
2,814,602	+				+1.1
2,814,603	-				-1.7
2,814,603	-				-1.7
2,814,631	+				-0.7
2,814,696	-				-1.9
2,814,696	-				-1.4
2,814,700	-				+0.7
2,814,700	-				-0.8
2,814,716	+				-0.1
2,814,719	+				-1.1
2,814,744	-				-2.8
2,814,744	-				+1.2
2,814,744	-				+1.4
2,814,790	-				-1.3
2,814,833	-				-2.1
2,814,847	+				+0.8
2,814,847	+				-1.1
2,814,848	-				+0.2
2,814,848	-				-0.1
2,814,901	+				+2.1
2,814,902	-				-0.1
2,814,910	+				+0.5
2,814,955	+		DZA65_RS13130	0.12	-0.1
2,814,961	+		DZA65_RS13130	0.13	-0.1
2,814,962	-		DZA65_RS13130	0.13	-1.7
2,815,085	-		DZA65_RS13130	0.25	-1.1
2,815,109	-		DZA65_RS13130	0.28	+0.1
2,815,141	+		DZA65_RS13130	0.31	+0.0
2,815,141	+		DZA65_RS13130	0.31	-1.7
2,815,141	+		DZA65_RS13130	0.31	-1.7
2,815,141	+		DZA65_RS13130	0.31	-2.1
2,815,141	+		DZA65_RS13130	0.31	-0.4
2,815,142	-		DZA65_RS13130	0.31	-1.1
2,815,142	-		DZA65_RS13130	0.31	+1.6
2,815,199	-		DZA65_RS13130	0.37	+0.6
2,815,376	-		DZA65_RS13130	0.55	-1.9
2,815,426	+		DZA65_RS13130	0.60	+0.3
2,815,472	+		DZA65_RS13130	0.64	+1.1
2,815,526	+		DZA65_RS13130	0.70	-1.4
2,815,526	+		DZA65_RS13130	0.70	-0.8
2,815,526	+		DZA65_RS13130	0.70	-2.1
2,815,526	+		DZA65_RS13130	0.70	+1.5
2,815,526	+		DZA65_RS13130	0.70	-0.4
2,815,526	+		DZA65_RS13130	0.70	-1.9
2,815,526	+		DZA65_RS13130	0.70	-1.1
2,815,527	-		DZA65_RS13130	0.70	-1.9
2,815,529	+		DZA65_RS13130	0.70	-1.7
2,815,529	+		DZA65_RS13130	0.70	-1.1
2,815,529	+		DZA65_RS13130	0.70	+1.1
2,815,529	+		DZA65_RS13130	0.70	-1.7
2,815,530	-		DZA65_RS13130	0.70	-1.4
2,815,530	-		DZA65_RS13130	0.70	-1.2
2,815,530	-		DZA65_RS13130	0.70	+0.3
2,815,530	-		DZA65_RS13130	0.70	-2.1
2,815,530	-		DZA65_RS13130	0.70	+0.9
2,815,530	-		DZA65_RS13130	0.70	-1.9
2,815,535	+				-0.1
2,815,535	+		DZA65_RS13130	0.71	-0.7
2,815,535	+		DZA65_RS13130	0.71	-0.2
2,815,535	+		DZA65_RS13130	0.71	+1.7
2,815,535	+		DZA65_RS13130	0.71	+0.5
2,815,536	-		DZA65_RS13130	0.71	-0.7
2,815,537	+		DZA65_RS13130	0.71	+1.7
2,815,537	+		DZA65_RS13130	0.71	+0.9
2,815,537	+		DZA65_RS13130	0.71	-1.6
2,815,537	+		DZA65_RS13130	0.71	-2.2
2,815,537	+		DZA65_RS13130	0.71	-0.0
2,815,537	+		DZA65_RS13130	0.71	+1.6
2,815,538	-		DZA65_RS13130	0.71	+0.9
2,815,538	-		DZA65_RS13130	0.71	-1.1
2,815,538	-		DZA65_RS13130	0.71	-3.3
2,815,607	-		DZA65_RS13130	0.78	+3.2
2,815,689	-		DZA65_RS13130	0.86	+0.3
2,815,689	-		DZA65_RS13130	0.86	-0.7
2,815,689	-		DZA65_RS13130	0.86	-0.9
2,815,763	+				-1.8
2,815,763	+				-1.4
2,815,764	-				-0.7
2,815,764	-				-0.5
2,815,764	-				-1.6
2,815,778	+				+0.3
2,815,829	+				-3.0
2,815,829	+				-0.1
2,815,829	+				-0.5
2,815,830	-				-0.7
2,815,830	-				+0.0
2,815,830	-				+0.6
2,815,830	-				+2.5
2,815,830	-				+1.5
2,815,830	-				-0.9
2,815,830	-				+0.4
2,815,832	+				-1.6
2,815,832	+				+1.7
2,815,833	-				-0.7
2,815,833	-				-1.4
2,815,833	-				-0.1
2,815,833	-				-1.1
2,815,833	-				+2.7
2,815,833	-				+0.9
2,815,835	+				-0.7
2,815,835	+				+2.4
2,815,835	+				+0.9
2,815,835	+				-1.6
2,815,835	+				-1.4
2,815,835	+				+0.9
2,815,835	+				+0.6
2,815,835	+				-0.7
2,815,836	-				+2.4
2,815,836	-				-0.1
2,815,836	-				-1.9
2,815,836	-				+1.1
2,815,836	-				-0.1
2,815,838	+				-0.0
2,815,839	-				+0.6
2,815,839	-				-1.7
2,815,854	+				-0.7
2,815,854	+				-0.3
2,815,854	+				-0.0
2,815,854	+				+0.9
2,815,855	-				+1.3
2,815,855	-				-0.1
2,815,855	-				-1.9
2,815,858	-				+0.9
2,815,869	+				+0.9
2,815,869	+				-1.7
2,815,869	+				-1.4
2,815,870	-				-1.1
2,815,870	-				+0.3
2,815,870	-				-2.3
2,815,870	-				-1.9
2,815,887	+				-0.1
2,815,887	+				+0.9
2,815,887	+				+1.0
2,815,887	+				+2.5
2,815,887	+				-0.5
2,815,888	-				+1.4
2,815,888	-				-0.9
2,815,905	+				+0.9
2,815,906	-				+0.9
2,815,923	+				-0.7
2,815,923	+				-1.9
2,815,924	-				-1.1
2,815,924	-				-2.2
2,815,929	+				+0.3
2,815,929	+				-1.2
2,815,929	+				+0.8
2,815,930	-				+0.9
2,815,930	-				+0.3
2,815,930	-				-1.4
2,815,930	-				-1.9
2,815,941	+				-1.7
2,815,941	+				+0.9
2,815,941	+				-1.7
2,815,941	+				-1.1
2,815,941	+				-1.1
2,815,941	+				+0.2
2,815,942	-				-0.7
2,815,942	-				-0.3
2,815,942	-				-0.1
2,815,969	+				+0.3
2,816,046	+				+0.3
2,816,120	+				+1.0
2,816,121	-				-1.1
2,816,164	+		DZA65_RS13135	0.26	+0.6
2,816,165	-		DZA65_RS13135	0.27	+1.9
2,816,165	-		DZA65_RS13135	0.27	+0.7
2,816,224	+				-2.3
2,816,230	+				+0.5
2,816,230	+				+0.9
2,816,230	+				+1.9
2,816,230	+				-1.4
2,816,230	+				-1.7
2,816,233	+				-2.1
2,816,233	+				+0.6
2,816,233	+				+0.8
2,816,233	+				+0.4
2,816,234	-				-0.3
2,816,234	-				+0.3
2,816,234	-				-1.1
2,816,243	+				+1.9
2,816,243	+				-0.5
2,816,243	+				-1.4
2,816,243	+				-0.7
2,816,244	-				-0.5
2,816,244	-				-1.9
2,816,244	-				+1.9
2,816,325	-				-2.7
2,816,330	+				-1.1
2,816,330	+				-1.9
2,816,330	+				-1.1
2,816,331	-				+1.9
2,816,331	-				+1.6
2,816,331	-				-1.5
2,816,378	+				+1.6
2,816,378	+				-0.4
2,816,379	-				-0.8
2,816,409	-				-0.7
2,816,438	+				+0.5
2,816,438	+				-1.1
2,816,438	+				-0.6
2,816,438	+				-2.6
2,816,438	+				-1.1
2,816,439	-				-1.9
2,816,439	-				-0.7
2,816,477	+				-0.8
2,816,477	+				-1.7
2,816,478	-				-1.4
2,816,478	-				+1.5
2,816,478	-				-0.7
2,816,562	-				-0.4
2,816,565	+				-0.1
2,816,565	+				+0.9
2,816,565	+				+0.7
2,816,574	-				-2.9
2,816,585	+				+0.6
2,816,585	+				-0.5
2,816,585	+				-0.5
2,816,585	+				-1.0
2,816,585	+				+1.9
2,816,586	-				+1.5
2,816,590	+				-2.1
2,816,590	+				-1.1
2,816,591	-				+0.9
2,816,602	+				+0.7
2,816,602	+				-2.1
2,816,607	+				-2.9
2,816,607	+				+2.2
2,816,607	+				+1.9
2,816,608	-				-0.1
2,816,614	+				-0.1
2,816,614	+				+0.9
2,816,615	-				-0.7
2,816,615	-				-2.1
2,816,615	-				-0.7
2,816,615	-				+1.7
2,816,632	+				-1.9
2,816,633	-				-0.4
2,816,633	-				-1.3
2,816,633	-				-0.9
2,816,687	+				-1.4
2,816,731	-				-0.1
2,816,768	-		DZA65_RS13140	0.13	-2.7
2,816,768	-		DZA65_RS13140	0.13	-1.9
2,816,768	-		DZA65_RS13140	0.13	+1.4